Wall clock time and date at job start Tue Mar 31 2020 03:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.46864 * 2 1 4 4 C 1.47012 * 111.00400 * 72.21545 * 3 2 1 5 5 C 1.53099 * 109.25965 * 182.39053 * 4 3 2 6 6 O 1.43016 * 109.29510 * 303.17907 * 5 4 3 7 7 C 1.43021 * 113.73580 * 58.60073 * 6 5 4 8 8 C 1.47016 * 110.99733 * 195.85868 * 3 2 1 9 9 H 1.08998 * 109.50456 * 297.53318 * 8 3 2 10 10 C 1.50692 * 109.54545 * 57.65135 * 8 3 2 11 11 O 1.21281 * 120.00475 * 28.25061 * 10 8 3 12 12 N 1.34785 * 119.99871 * 208.26055 * 10 8 3 13 13 C 1.47426 * 125.64624 * 4.96154 * 12 10 8 14 14 C 1.54910 * 104.82845 * 204.09787 * 13 12 10 15 15 C 1.55157 * 101.58427 * 322.98805 * 14 13 12 16 16 H 1.08997 * 110.71984 * 276.96879 * 15 14 13 17 17 N 1.46494 * 110.72264 * 153.86455 * 15 14 13 18 18 C 1.36941 * 119.99699 * 86.45548 * 17 15 14 19 19 H 1.07997 * 120.00117 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99904 * 180.02562 * 18 17 15 21 21 N 1.31617 * 119.99931 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99894 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46915 * 60.00053 * 22 20 18 24 24 H 1.48501 * 109.47067 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47146 * 299.99848 * 22 20 18 26 26 C 1.47021 * 125.64960 * 184.66107 * 12 10 8 27 27 H 1.08998 * 109.46979 * 300.00050 * 1 2 3 28 28 H 1.08993 * 109.47546 * 60.00170 * 1 2 3 29 29 H 1.09008 * 109.47051 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46979 * 239.99950 * 2 1 3 31 31 H 1.09000 * 109.47229 * 119.99817 * 2 1 3 32 32 H 1.08994 * 109.50827 * 302.32873 * 4 3 2 33 33 H 1.09003 * 109.49917 * 62.41696 * 4 3 2 34 34 H 1.09007 * 109.50368 * 63.09227 * 5 4 3 35 35 H 1.09002 * 109.50797 * 183.21643 * 5 4 3 36 36 H 1.09002 * 109.50074 * 181.44656 * 7 6 5 37 37 H 1.08994 * 109.51064 * 61.35854 * 7 6 5 38 38 H 1.09007 * 110.36758 * 322.93152 * 13 12 10 39 39 H 1.08997 * 110.37048 * 85.25578 * 13 12 10 40 40 H 1.09001 * 111.00478 * 81.06581 * 14 13 12 41 41 H 1.09004 * 111.00023 * 204.87756 * 14 13 12 42 42 H 0.96994 * 120.00650 * 266.46252 * 17 15 14 43 43 H 0.96999 * 119.99763 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.87593 * 298.38727 * 26 12 10 45 45 H 1.08997 * 109.88254 * 59.55180 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8000 2.0215 1.3069 5 6 2.2688 3.4776 1.2445 6 8 3.6424 3.5153 0.8478 7 6 3.8923 2.9036 -0.4206 8 6 3.4400 1.4416 -0.3751 9 1 4.0329 0.9001 0.3620 10 6 3.6285 0.8142 -1.7321 11 8 2.7226 0.8293 -2.5384 12 7 4.8039 0.2361 -2.0499 13 6 5.9471 0.0554 -1.1368 14 6 7.1829 -0.0507 -2.0648 15 6 6.6045 -0.8476 -3.2640 16 1 6.6138 -1.9175 -3.0564 17 7 7.3500 -0.5528 -4.4901 18 6 8.4825 -1.2618 -4.7900 19 1 8.8263 -2.0379 -4.1223 20 6 9.1892 -0.9822 -5.9515 21 7 8.7705 -0.0360 -6.7650 22 14 10.7346 -1.9489 -6.3602 23 1 10.3988 -3.3902 -6.4827 24 1 11.2981 -1.4615 -7.6448 25 1 11.7348 -1.7637 -5.2784 26 6 5.1559 -0.3244 -3.3627 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.7386 1.9911 1.5528 33 1 2.3662 1.4886 2.0708 34 1 1.6659 4.0233 0.5186 35 1 2.1609 3.9372 2.2270 36 1 4.9586 2.9480 -0.6422 37 1 3.3372 3.4324 -1.1954 38 1 6.0431 0.9156 -0.4741 39 1 5.8285 -0.8599 -0.5568 40 1 7.5216 0.9366 -2.3788 41 1 7.9888 -0.6023 -1.5807 42 1 7.0415 0.1446 -5.0896 43 1 9.2641 0.1591 -7.5768 44 1 4.4800 -1.1431 -3.6094 45 1 5.0952 0.4519 -4.1255 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019066256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:04 Heat of formation + Delta-G solvation = -47.878638 kcal Electronic energy + Delta-G solvation = -25171.434745 eV Core-core repulsion = 21610.727832 eV Total energy + Delta-G solvation = -3560.706913 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.71402 -39.04470 -37.34520 -36.13836 -34.18569 -32.24217 -31.23929 -31.10637 -29.56197 -27.97535 -26.79307 -25.10156 -23.60133 -22.80825 -22.27845 -21.06177 -20.02575 -19.08823 -17.48326 -17.28456 -16.83938 -16.62345 -15.72820 -15.50620 -15.16394 -15.08653 -14.54328 -14.40118 -14.17091 -13.82007 -13.52935 -13.43936 -13.16572 -12.76691 -12.55138 -12.28779 -12.14029 -11.96053 -11.91038 -11.66898 -11.63500 -11.20778 -11.05430 -10.86103 -10.81428 -10.74056 -10.39480 -10.14578 -10.10144 -9.78896 -9.55341 -8.99627 -8.64224 -8.45674 -7.07868 -5.84662 -3.15706 2.59527 2.89169 3.39616 3.44044 3.44996 3.45520 3.67423 4.42719 4.51928 4.52681 4.66330 4.76907 4.79982 4.90288 4.98183 5.06812 5.17755 5.21625 5.26893 5.31441 5.31870 5.42362 5.46204 5.50508 5.54500 5.65001 5.66743 5.71020 5.81368 5.90775 6.06072 6.10290 6.19878 6.31886 6.47641 6.55079 6.62992 6.70071 6.80947 6.86067 7.61833 7.64006 8.25184 8.32738 9.44065 9.97918 10.32559 11.37417 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.029212 B = 0.003164 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.279707 B = 8846.103201 C = 9228.951702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 N -0.515 5.515 4 C 0.018 3.982 5 C 0.060 3.940 6 O -0.378 6.378 7 C 0.077 3.923 8 C 0.037 3.963 9 H 0.068 0.932 10 C 0.531 3.469 11 O -0.521 6.521 12 N -0.613 5.613 13 C 0.095 3.905 14 C -0.153 4.153 15 C 0.172 3.828 16 H 0.063 0.937 17 N -0.715 5.715 18 C -0.247 4.247 19 H 0.072 0.928 20 C -0.009 4.009 21 N -0.930 5.930 22 Si 0.909 3.091 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.102 3.898 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.032 0.968 32 H 0.092 0.908 33 H 0.043 0.957 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.386 0.614 43 H 0.258 0.742 44 H 0.066 0.934 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.245 3.457 18.757 23.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.080 4.080 3 N -0.242 5.242 4 C -0.110 4.110 5 C -0.017 4.017 6 O -0.296 6.296 7 C 0.000 4.000 8 C -0.075 4.075 9 H 0.086 0.914 10 C 0.317 3.683 11 O -0.396 6.396 12 N -0.348 5.348 13 C -0.028 4.028 14 C -0.195 4.195 15 C 0.060 3.940 16 H 0.081 0.919 17 N -0.356 5.356 18 C -0.378 4.378 19 H 0.090 0.910 20 C -0.206 4.206 21 N -0.577 5.577 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C -0.021 4.021 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.050 0.950 32 H 0.110 0.890 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.221 0.779 43 H 0.067 0.933 44 H 0.084 0.916 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.784 3.731 18.031 23.001 hybrid contribution 1.103 -0.937 0.071 1.449 sum -12.681 2.794 18.102 22.278 Atomic orbital electron populations 1.21705 0.94310 1.01510 1.02390 1.22178 0.96833 0.87851 1.01098 1.61988 1.14957 1.18704 1.28511 1.22875 1.02393 0.95978 0.89730 1.22726 0.82872 0.95037 1.01064 1.88021 1.26153 1.78780 1.36680 1.22535 1.01911 0.89164 0.86414 1.22265 0.90872 0.98973 0.95426 0.91391 1.19733 0.81278 0.78624 0.88625 1.90718 1.40098 1.57946 1.50821 1.48541 1.13992 1.58251 1.13989 1.22464 0.86472 1.00698 0.93187 1.23567 0.95477 1.02867 0.97562 1.21173 0.87912 0.96887 0.88001 0.91863 1.42347 1.28448 1.43355 1.21468 1.19158 1.00781 1.13575 1.04265 0.91008 1.24776 0.99496 0.98983 0.97308 1.69653 1.41055 1.33264 1.13730 0.86244 0.82961 0.79381 0.77417 1.21168 1.21642 1.21160 1.22295 0.97468 0.98326 0.83966 0.93017 0.91441 0.92292 0.90031 0.94952 0.88983 0.93839 0.91908 0.88195 0.87680 0.91240 0.91292 0.91672 0.90471 0.90474 0.77922 0.93257 0.91594 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.96 37.16 0.37 -0.97 16 2 C 0.05 0.54 5.36 -3.82 -0.02 0.52 16 3 N -0.52 -6.05 4.23 -227.73 -0.96 -7.01 16 4 C 0.02 0.16 5.47 -3.71 -0.02 0.14 16 5 C 0.06 0.53 7.01 37.21 0.26 0.79 16 6 O -0.38 -4.30 10.83 -35.23 -0.38 -4.68 16 7 C 0.08 0.91 6.27 37.21 0.23 1.15 16 8 C 0.04 0.46 1.75 -68.75 -0.12 0.33 16 9 H 0.07 0.78 7.08 -51.93 -0.37 0.41 16 10 C 0.53 8.17 5.74 -10.99 -0.06 8.11 16 11 O -0.52 -9.83 15.94 5.56 0.09 -9.74 16 12 N -0.61 -9.23 3.33 -170.51 -0.57 -9.79 16 13 C 0.09 1.20 6.35 -2.53 -0.02 1.19 16 14 C -0.15 -2.40 6.77 -24.58 -0.17 -2.57 16 15 C 0.17 3.21 3.58 -66.09 -0.24 2.97 16 16 H 0.06 1.17 8.12 -51.93 -0.42 0.75 16 17 N -0.72 -17.16 5.25 -51.65 -0.27 -17.43 16 18 C -0.25 -6.56 9.98 -15.06 -0.15 -6.71 16 19 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 21 N -0.93 -27.47 13.06 55.49 0.72 -26.74 16 22 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 C 0.10 1.78 6.63 -3.06 -0.02 1.76 16 27 H 0.05 0.41 6.73 -51.93 -0.35 0.06 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 30 H 0.08 1.12 5.97 -51.93 -0.31 0.81 16 31 H 0.03 0.32 8.05 -51.93 -0.42 -0.09 16 32 H 0.09 0.68 6.64 -51.93 -0.34 0.33 16 33 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.11 1.15 7.80 -51.93 -0.41 0.75 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.75 7.04 -51.92 -0.37 0.38 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.39 9.99 7.51 -40.82 -0.31 9.69 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.07 1.38 7.69 -51.93 -0.40 0.98 16 LS Contribution 354.08 15.07 5.34 5.34 Total: -1.00 -31.31 354.08 -8.57 -39.87 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -7.46 Total: 7.11 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -0.05 Total: 6.36 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -1.08 Total: -60.98 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.29 Total: -14.43 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.31 -8.57 -39.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019066256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.008 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds