Wall clock time and date at job start Tue Mar 31 2020 03:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.46864 * 2 1 4 4 C 1.47012 * 111.00400 * 72.21545 * 3 2 1 5 5 C 1.53099 * 109.25965 * 182.39053 * 4 3 2 6 6 O 1.43016 * 109.29510 * 303.17907 * 5 4 3 7 7 C 1.43021 * 113.73580 * 58.60073 * 6 5 4 8 8 C 1.47016 * 110.99733 * 195.85868 * 3 2 1 9 9 H 1.08998 * 109.50456 * 297.53318 * 8 3 2 10 10 C 1.50692 * 109.54545 * 57.65135 * 8 3 2 11 11 O 1.21281 * 120.00475 * 28.25061 * 10 8 3 12 12 N 1.34785 * 119.99871 * 208.26055 * 10 8 3 13 13 C 1.47426 * 125.64624 * 4.96154 * 12 10 8 14 14 C 1.54910 * 104.82845 * 204.09787 * 13 12 10 15 15 C 1.55157 * 101.58427 * 322.98805 * 14 13 12 16 16 H 1.08997 * 110.71984 * 276.96879 * 15 14 13 17 17 N 1.46494 * 110.72264 * 153.86455 * 15 14 13 18 18 C 1.36941 * 119.99699 * 86.45548 * 17 15 14 19 19 H 1.07997 * 120.00117 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99904 * 180.02562 * 18 17 15 21 21 N 1.31617 * 119.99931 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99894 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46915 * 60.00053 * 22 20 18 24 24 H 1.48501 * 109.47067 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47146 * 299.99848 * 22 20 18 26 26 C 1.47021 * 125.64960 * 184.66107 * 12 10 8 27 27 H 1.08998 * 109.46979 * 300.00050 * 1 2 3 28 28 H 1.08993 * 109.47546 * 60.00170 * 1 2 3 29 29 H 1.09008 * 109.47051 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46979 * 239.99950 * 2 1 3 31 31 H 1.09000 * 109.47229 * 119.99817 * 2 1 3 32 32 H 1.08994 * 109.50827 * 302.32873 * 4 3 2 33 33 H 1.09003 * 109.49917 * 62.41696 * 4 3 2 34 34 H 1.09007 * 109.50368 * 63.09227 * 5 4 3 35 35 H 1.09002 * 109.50797 * 183.21643 * 5 4 3 36 36 H 1.09002 * 109.50074 * 181.44656 * 7 6 5 37 37 H 1.08994 * 109.51064 * 61.35854 * 7 6 5 38 38 H 1.09007 * 110.36758 * 322.93152 * 13 12 10 39 39 H 1.08997 * 110.37048 * 85.25578 * 13 12 10 40 40 H 1.09001 * 111.00478 * 81.06581 * 14 13 12 41 41 H 1.09004 * 111.00023 * 204.87756 * 14 13 12 42 42 H 0.96994 * 120.00650 * 266.46252 * 17 15 14 43 43 H 0.96999 * 119.99763 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.87593 * 298.38727 * 26 12 10 45 45 H 1.08997 * 109.88254 * 59.55180 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8000 2.0215 1.3069 5 6 2.2688 3.4776 1.2445 6 8 3.6424 3.5153 0.8478 7 6 3.8923 2.9036 -0.4206 8 6 3.4400 1.4416 -0.3751 9 1 4.0329 0.9001 0.3620 10 6 3.6285 0.8142 -1.7321 11 8 2.7226 0.8293 -2.5384 12 7 4.8039 0.2361 -2.0499 13 6 5.9471 0.0554 -1.1368 14 6 7.1829 -0.0507 -2.0648 15 6 6.6045 -0.8476 -3.2640 16 1 6.6138 -1.9175 -3.0564 17 7 7.3500 -0.5528 -4.4901 18 6 8.4825 -1.2618 -4.7900 19 1 8.8263 -2.0379 -4.1223 20 6 9.1892 -0.9822 -5.9515 21 7 8.7705 -0.0360 -6.7650 22 14 10.7346 -1.9489 -6.3602 23 1 10.3988 -3.3902 -6.4827 24 1 11.2981 -1.4615 -7.6448 25 1 11.7348 -1.7637 -5.2784 26 6 5.1559 -0.3244 -3.3627 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.7386 1.9911 1.5528 33 1 2.3662 1.4886 2.0708 34 1 1.6659 4.0233 0.5186 35 1 2.1609 3.9372 2.2270 36 1 4.9586 2.9480 -0.6422 37 1 3.3372 3.4324 -1.1954 38 1 6.0431 0.9156 -0.4741 39 1 5.8285 -0.8599 -0.5568 40 1 7.5216 0.9366 -2.3788 41 1 7.9888 -0.6023 -1.5807 42 1 7.0415 0.1446 -5.0896 43 1 9.2641 0.1591 -7.5768 44 1 4.4800 -1.1431 -3.6094 45 1 5.0952 0.4519 -4.1255 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019066256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:03 Heat of formation + Delta-G solvation = -71.183564 kcal Electronic energy + Delta-G solvation = -25172.445323 eV Core-core repulsion = 21610.727832 eV Total energy + Delta-G solvation = -3561.717491 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.77873 -40.12513 -38.64948 -37.04429 -35.94201 -33.60451 -32.63538 -31.86614 -30.99062 -29.43881 -27.68318 -26.27834 -25.27294 -24.05170 -23.10901 -22.04396 -21.44755 -20.20997 -19.33591 -18.48470 -17.89134 -17.50287 -17.03331 -16.55425 -16.33680 -16.10225 -15.90366 -15.51997 -15.29986 -15.17197 -14.91977 -14.71403 -14.28098 -14.11131 -13.73401 -13.33315 -13.21198 -13.13434 -12.97225 -12.90379 -12.75495 -12.64329 -12.43401 -12.36798 -12.14684 -11.90504 -11.76974 -11.69660 -11.60776 -11.08141 -10.93171 -10.66527 -9.75507 -9.45359 -9.04949 -7.94631 -5.25215 1.40427 1.49595 1.52474 1.58350 1.72745 2.56761 2.60253 2.83100 3.33288 3.41551 3.64196 3.71449 3.82538 3.85741 3.88147 3.98344 4.05713 4.21524 4.25451 4.32448 4.36066 4.37684 4.50070 4.50349 4.55141 4.59781 4.66478 4.72903 4.82014 4.90393 4.93140 4.96141 5.03027 5.14626 5.23335 5.29662 5.42955 5.53714 5.74755 5.92279 6.00339 6.25602 6.44176 7.03155 7.32197 8.03837 8.27369 9.28705 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.029212 B = 0.003164 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.279707 B = 8846.103201 C = 9228.951702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.049 3.951 3 N -0.535 5.535 4 C 0.020 3.980 5 C 0.054 3.946 6 O -0.385 6.385 7 C 0.081 3.919 8 C 0.047 3.953 9 H 0.086 0.914 10 C 0.531 3.469 11 O -0.563 6.563 12 N -0.612 5.612 13 C 0.103 3.897 14 C -0.143 4.143 15 C 0.166 3.834 16 H 0.069 0.931 17 N -0.731 5.731 18 C -0.241 4.241 19 H 0.084 0.916 20 C -0.075 4.075 21 N -0.971 5.971 22 Si 0.975 3.025 23 H -0.278 1.278 24 H -0.300 1.300 25 H -0.274 1.274 26 C 0.112 3.888 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.110 0.890 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.130 0.870 36 H 0.112 0.888 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.059 0.941 41 H 0.090 0.910 42 H 0.372 0.628 43 H 0.251 0.749 44 H 0.061 0.939 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.238 2.906 22.139 25.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.078 4.078 3 N -0.262 5.262 4 C -0.107 4.107 5 C -0.022 4.022 6 O -0.304 6.304 7 C 0.003 3.997 8 C -0.065 4.065 9 H 0.104 0.896 10 C 0.319 3.681 11 O -0.441 6.441 12 N -0.346 5.346 13 C -0.019 4.019 14 C -0.184 4.184 15 C 0.056 3.944 16 H 0.087 0.913 17 N -0.371 5.371 18 C -0.372 4.372 19 H 0.102 0.898 20 C -0.267 4.267 21 N -0.622 5.622 22 Si 0.804 3.196 23 H -0.204 1.204 24 H -0.227 1.227 25 H -0.200 1.200 26 C -0.012 4.012 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.128 0.872 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.147 0.853 36 H 0.130 0.870 37 H 0.070 0.930 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.078 0.922 41 H 0.109 0.891 42 H 0.204 0.796 43 H 0.059 0.941 44 H 0.079 0.921 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.783 3.159 21.502 25.735 hybrid contribution 0.989 -0.761 -0.910 1.544 sum -12.794 2.398 20.592 24.361 Atomic orbital electron populations 1.21666 0.93180 1.02221 1.02301 1.22146 0.97784 0.87618 1.00298 1.61994 1.14434 1.19194 1.30546 1.22970 1.03740 0.95601 0.88368 1.22970 0.81561 0.95301 1.02369 1.88017 1.27717 1.78638 1.35997 1.22449 1.02075 0.88654 0.86492 1.22185 0.91973 0.98991 0.93379 0.89595 1.20361 0.80480 0.77760 0.89517 1.90696 1.41541 1.59443 1.52428 1.48589 1.14785 1.57921 1.13345 1.22595 0.83620 1.03357 0.92357 1.23358 0.97125 1.01323 0.96575 1.21369 0.88134 0.97677 0.87179 0.91272 1.42529 1.28544 1.42895 1.23113 1.19597 1.00855 1.12929 1.03829 0.89807 1.25597 1.02883 1.00493 0.97764 1.69825 1.42584 1.35513 1.14241 0.85196 0.79561 0.78125 0.76766 1.20381 1.22670 1.20003 1.21974 0.96818 0.97420 0.84977 0.90985 0.93538 0.91249 0.93129 0.93250 0.87173 0.92837 0.92468 0.85271 0.86968 0.92984 0.88442 0.88968 0.92221 0.89105 0.79613 0.94055 0.92068 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.96 71.98 0.72 -1.65 16 2 C 0.05 1.02 5.36 86.30 0.46 1.48 16 3 N -0.53 -11.60 4.23 -874.39 -3.70 -15.29 16 4 C 0.02 0.30 5.47 86.31 0.47 0.77 16 5 C 0.05 0.81 7.01 72.02 0.50 1.31 16 6 O -0.39 -7.81 10.83 -148.98 -1.61 -9.43 16 7 C 0.08 1.79 6.27 72.02 0.45 2.25 16 8 C 0.05 1.07 1.75 44.18 0.08 1.15 16 9 H 0.09 1.66 7.08 -2.39 -0.02 1.64 16 10 C 0.53 16.11 5.74 87.65 0.50 16.62 16 11 O -0.56 -21.86 15.94 -3.03 -0.05 -21.91 16 12 N -0.61 -17.90 3.33 -811.77 -2.70 -20.60 16 13 C 0.10 2.30 6.35 86.85 0.55 2.85 16 14 C -0.14 -4.23 6.77 31.99 0.22 -4.02 16 15 C 0.17 6.13 3.58 46.18 0.17 6.29 16 16 H 0.07 2.49 8.12 -2.39 -0.02 2.47 16 17 N -0.73 -35.65 5.25 -317.32 -1.67 -37.32 16 18 C -0.24 -12.78 9.98 84.03 0.84 -11.94 16 19 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 20 C -0.08 -4.21 5.50 84.86 0.47 -3.74 16 21 N -0.97 -59.03 13.06 21.65 0.28 -58.74 16 22 Si 0.97 44.97 29.55 68.60 2.03 46.99 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 26 C 0.11 3.97 6.63 86.73 0.58 4.55 16 27 H 0.07 0.94 6.73 -2.39 -0.02 0.93 16 28 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.05 1.37 5.97 -2.39 -0.01 1.36 16 31 H 0.05 0.85 8.05 -2.39 -0.02 0.83 16 32 H 0.11 1.22 6.64 -2.39 -0.02 1.20 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.11 2.26 7.80 -2.39 -0.02 2.24 16 37 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.10 1.72 7.04 -2.38 -0.02 1.70 16 39 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 42 H 0.37 20.03 7.51 -92.71 -0.70 19.34 16 43 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 44 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.05 1.87 7.69 -2.39 -0.02 1.86 16 Total: -1.00 -69.58 354.08 -1.13 -70.71 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: 0.28 Total: 29.66 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: 6.00 Total: 15.92 kcal Atomic # 7 Polarization: -124.18 SS G_CDS: -7.78 Total: -131.96 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -1.66 Total: -31.33 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -69.58 -1.13 -70.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019066256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.469 kcal (2) G-P(sol) polarization free energy of solvation -69.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds