Wall clock time and date at job start Tue Mar 31 2020 03:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47266 * 2 1 4 4 C 1.50703 * 109.47424 * 120.00130 * 2 1 3 5 5 O 1.21284 * 119.99536 * 103.13734 * 4 2 1 6 6 N 1.34776 * 119.99781 * 283.14120 * 4 2 1 7 7 C 1.47419 * 125.65230 * 359.95409 * 6 4 2 8 8 C 1.54907 * 104.83447 * 204.16550 * 7 6 4 9 9 C 1.55160 * 101.58116 * 322.99134 * 8 7 6 10 10 H 1.08997 * 110.87015 * 277.06458 * 9 8 7 11 11 N 1.46501 * 110.71926 * 153.86613 * 9 8 7 12 12 C 1.36929 * 120.00232 * 91.47546 * 11 9 8 13 13 H 1.08009 * 119.99845 * 0.02562 * 12 11 9 14 14 C 1.38805 * 120.00423 * 179.97438 * 12 11 9 15 15 N 1.31615 * 120.00720 * 180.02562 * 14 12 11 16 16 Si 1.86807 * 119.99705 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46845 * 90.00048 * 16 14 12 18 18 H 1.48499 * 109.47166 * 209.99816 * 16 14 12 19 19 H 1.48492 * 109.47378 * 330.00283 * 16 14 12 20 20 C 1.47019 * 125.64407 * 179.97438 * 6 4 2 21 21 N 1.46897 * 109.47018 * 240.00198 * 2 1 3 22 22 C 1.47020 * 110.99949 * 75.95036 * 21 2 1 23 23 C 1.53102 * 109.25631 * 177.60855 * 22 21 2 24 24 O 1.43014 * 109.26011 * 56.84837 * 23 22 21 25 25 C 1.43014 * 113.73919 * 301.33183 * 24 23 22 26 26 C 1.47010 * 111.00180 * 312.31658 * 21 2 1 27 27 H 1.08996 * 109.47311 * 59.99981 * 1 2 3 28 28 H 1.08996 * 109.47266 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46756 * 299.99933 * 1 2 3 30 30 H 1.09000 * 110.36864 * 323.00528 * 7 6 4 31 31 H 1.08999 * 110.36391 * 85.21784 * 7 6 4 32 32 H 1.09001 * 111.00568 * 204.91855 * 8 7 6 33 33 H 1.09002 * 111.00242 * 81.06674 * 8 7 6 34 34 H 0.97002 * 119.99893 * 271.19970 * 11 9 8 35 35 H 0.97000 * 120.00812 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.88593 * 59.48311 * 20 6 4 37 37 H 1.09003 * 109.88699 * 298.32093 * 20 6 4 38 38 H 1.08994 * 109.50929 * 297.54071 * 22 21 2 39 39 H 1.08997 * 109.50176 * 57.68177 * 22 21 2 40 40 H 1.09004 * 109.50438 * 296.91698 * 23 22 21 41 41 H 1.08998 * 109.50658 * 176.78722 * 23 22 21 42 42 H 1.09005 * 109.50657 * 298.72977 * 25 24 23 43 43 H 1.09002 * 109.54264 * 178.62735 * 25 24 23 44 44 H 1.09007 * 109.50892 * 302.32972 * 26 21 2 45 45 H 1.09002 * 109.50819 * 62.45808 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.4596 -1.8423 1.1451 6 7 2.0068 -0.0880 2.4256 7 6 1.5172 1.2807 2.6713 8 6 2.2421 1.7354 3.9625 9 6 2.2692 0.4196 4.7844 10 1 1.3269 0.2717 5.3118 11 7 3.3928 0.4187 5.7245 12 6 3.2203 0.8913 6.9980 13 1 2.2558 1.2643 7.3096 14 6 4.2848 0.8900 7.8889 15 7 4.1189 1.3437 9.1132 16 14 5.9524 0.2428 7.3507 17 1 6.7542 1.3549 6.7799 18 1 6.6631 -0.3292 8.5224 19 1 5.7657 -0.8115 6.3218 20 6 2.4631 -0.6614 3.7001 21 7 2.0196 -0.6924 -1.1994 22 6 1.8811 0.1568 -2.3915 23 6 2.4565 -0.5784 -3.6049 24 8 1.7900 -1.8349 -3.7548 25 6 1.9050 -2.6875 -2.6124 26 6 1.3241 -1.9737 -1.3890 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.7805 1.9330 1.8387 31 1 0.4377 1.2760 2.8219 32 1 1.6720 2.5072 4.4795 33 1 3.2527 2.0796 3.7427 34 1 4.2579 0.0796 5.4460 35 1 4.8627 1.3425 9.7359 36 1 3.5170 -0.9305 3.6295 37 1 1.8691 -1.5422 3.9442 38 1 0.8268 0.3735 -2.5636 39 1 2.4249 1.0891 -2.2393 40 1 3.5229 -0.7477 -3.4559 41 1 2.3045 0.0234 -4.5009 42 1 2.9554 -2.9181 -2.4346 43 1 1.3547 -3.6115 -2.7902 44 1 1.4611 -2.5965 -0.5050 45 1 0.2608 -1.7911 -1.5450 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019892425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:55 Heat of formation + Delta-G solvation = -42.235275 kcal Electronic energy + Delta-G solvation = -24999.629487 eV Core-core repulsion = 21439.167288 eV Total energy + Delta-G solvation = -3560.462199 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.65064 -39.34650 -37.56581 -36.06586 -34.33875 -31.97934 -31.48354 -31.01055 -29.80405 -28.10905 -26.99487 -24.72433 -24.31073 -22.99436 -22.53921 -20.49550 -20.17546 -19.07933 -17.80781 -17.31331 -16.73492 -16.23570 -16.02164 -15.62619 -15.35954 -15.14942 -14.68729 -14.46565 -14.20030 -14.03820 -13.53823 -13.43013 -13.19031 -12.65952 -12.56555 -12.52017 -12.28075 -12.17437 -11.97881 -11.85677 -11.56634 -11.47994 -11.31798 -10.93251 -10.79114 -10.76543 -10.55298 -10.13008 -10.10813 -9.68198 -9.51262 -9.03399 -8.61415 -8.48667 -7.39560 -5.85776 -3.23511 2.64332 2.86537 3.33777 3.37650 3.42124 3.53723 3.68205 4.34089 4.52120 4.53832 4.67119 4.70840 4.81518 4.86701 4.88170 4.94093 5.04405 5.06696 5.13146 5.26198 5.28678 5.36149 5.42393 5.44087 5.47634 5.50794 5.60580 5.64633 5.75888 5.77870 5.80963 5.85095 6.09895 6.21637 6.38961 6.47045 6.60981 6.67539 6.72887 6.88985 7.61322 7.87821 8.24624 8.32576 9.09150 9.81777 9.99790 11.31850 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.030823 B = 0.003083 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.198211 B = 9079.265955 C = 9434.296887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.069 3.931 3 H 0.104 0.896 4 C 0.535 3.465 5 O -0.531 6.531 6 N -0.612 5.612 7 C 0.097 3.903 8 C -0.154 4.154 9 C 0.177 3.823 10 H 0.075 0.925 11 N -0.739 5.739 12 C -0.250 4.250 13 H 0.092 0.908 14 C 0.009 3.991 15 N -0.930 5.930 16 Si 0.883 3.117 17 H -0.283 1.283 18 H -0.289 1.289 19 H -0.276 1.276 20 C 0.099 3.901 21 N -0.516 5.516 22 C 0.016 3.984 23 C 0.065 3.935 24 O -0.389 6.389 25 C 0.065 3.935 26 C 0.009 3.991 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.363 0.637 35 H 0.261 0.739 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.045 0.955 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.097 0.903 42 H 0.061 0.939 43 H 0.097 0.903 44 H 0.109 0.891 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.959 -1.093 -24.327 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.043 4.043 3 H 0.122 0.878 4 C 0.323 3.677 5 O -0.408 6.408 6 N -0.347 5.347 7 C -0.026 4.026 8 C -0.195 4.195 9 C 0.066 3.934 10 H 0.093 0.907 11 N -0.381 5.381 12 C -0.380 4.380 13 H 0.110 0.890 14 C -0.187 4.187 15 N -0.577 5.577 16 Si 0.713 3.287 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.202 1.202 20 C -0.025 4.025 21 N -0.241 5.241 22 C -0.112 4.112 23 C -0.012 4.012 24 O -0.308 6.308 25 C -0.012 4.012 26 C -0.118 4.118 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.197 0.803 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.104 0.896 40 H 0.078 0.922 41 H 0.115 0.885 42 H 0.079 0.921 43 H 0.115 0.885 44 H 0.127 0.873 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.395 -1.820 -24.291 25.457 hybrid contribution 0.552 0.044 -0.010 0.554 sum -6.842 -1.776 -24.301 25.309 Atomic orbital electron populations 1.22362 0.94823 1.03470 1.03319 1.21577 0.94581 0.98582 0.89555 0.87830 1.19958 0.78569 0.86321 0.82897 1.90634 1.46622 1.18513 1.84995 1.48460 1.62671 1.16278 1.07307 1.22448 0.98592 0.82489 0.99085 1.23531 1.00893 1.00764 0.94325 1.21156 0.93023 0.90660 0.88575 0.90678 1.42722 1.08043 1.76131 1.11197 1.19036 0.98345 1.34474 0.86147 0.88975 1.24665 0.97730 1.00718 0.95594 1.69690 1.31523 1.51656 1.04819 0.86580 0.85453 0.78982 0.77704 1.20961 1.21577 1.20209 1.22343 1.00159 0.97445 0.82528 1.62052 1.56636 1.04018 1.01366 1.22846 1.00428 0.97079 0.90846 1.22633 0.96616 0.84901 0.97036 1.87958 1.75778 1.27968 1.39051 1.22681 1.01316 0.92841 0.84353 1.23056 0.95977 0.91846 1.00939 0.91441 0.91337 0.90914 0.91315 0.91400 0.90008 0.90700 0.80299 0.92887 0.91470 0.91414 0.93653 0.89579 0.92191 0.88473 0.92109 0.88497 0.87289 0.93855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 8.24 37.16 0.31 -1.26 16 2 C 0.07 0.73 2.09 -68.87 -0.14 0.59 16 3 H 0.10 0.96 6.84 -51.93 -0.35 0.61 16 4 C 0.54 7.71 7.02 -10.98 -0.08 7.63 16 5 O -0.53 -9.45 14.58 5.55 0.08 -9.37 16 6 N -0.61 -8.63 3.33 -170.52 -0.57 -9.19 16 7 C 0.10 1.11 6.00 -2.53 -0.02 1.10 16 8 C -0.15 -2.27 6.77 -24.58 -0.17 -2.43 16 9 C 0.18 3.14 3.61 -66.09 -0.24 2.90 16 10 H 0.08 1.34 8.09 -51.93 -0.42 0.92 16 11 N -0.74 -16.64 5.03 -51.65 -0.26 -16.90 16 12 C -0.25 -6.74 10.44 -15.07 -0.16 -6.90 16 13 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 14 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 15 N -0.93 -28.46 13.97 55.49 0.78 -27.68 16 16 Si 0.88 21.70 27.74 -169.99 -4.72 16.99 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 18 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.28 -6.46 6.51 56.52 0.37 -6.09 16 20 C 0.10 1.62 6.62 -3.06 -0.02 1.60 16 21 N -0.52 -5.72 4.44 -227.72 -1.01 -6.73 16 22 C 0.02 0.14 5.44 -3.71 -0.02 0.12 16 23 C 0.07 0.55 7.01 37.21 0.26 0.82 16 24 O -0.39 -4.16 10.83 -35.23 -0.38 -4.54 16 25 C 0.06 0.66 7.01 37.21 0.26 0.92 16 26 C 0.01 0.10 4.50 -3.71 -0.02 0.09 16 27 H 0.07 0.50 7.00 -51.93 -0.36 0.13 16 28 H 0.07 0.65 6.37 -51.93 -0.33 0.32 16 29 H 0.07 0.58 6.96 -51.93 -0.36 0.22 16 30 H 0.07 0.64 7.00 -51.93 -0.36 0.28 16 31 H 0.07 0.67 7.67 -51.93 -0.40 0.27 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.36 8.23 5.42 -40.82 -0.22 8.01 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 36 H 0.07 1.21 7.71 -51.93 -0.40 0.81 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.05 0.37 6.99 -51.93 -0.36 0.00 16 39 H 0.09 0.62 8.04 -51.93 -0.42 0.20 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.11 1.43 5.88 -51.93 -0.31 1.12 16 45 H 0.04 0.44 6.36 -51.93 -0.33 0.11 16 LS Contribution 344.57 15.07 5.19 5.19 Total: -1.00 -32.55 344.57 -8.19 -40.74 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -7.18 Total: 6.16 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -0.12 Total: 5.34 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: -1.06 Total: -60.51 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.30 Total: -13.91 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.72 Total: 16.99 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.55 -8.19 -40.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019892425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.499 kcal (2) G-P(sol) polarization free energy of solvation -32.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds