Wall clock time and date at job start Tue Mar 31 2020 03:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47266 * 2 1 4 4 C 1.50703 * 109.47424 * 120.00130 * 2 1 3 5 5 O 1.21284 * 119.99536 * 103.13734 * 4 2 1 6 6 N 1.34776 * 119.99781 * 283.14120 * 4 2 1 7 7 C 1.47419 * 125.65230 * 359.95409 * 6 4 2 8 8 C 1.54907 * 104.83447 * 204.16550 * 7 6 4 9 9 C 1.55160 * 101.58116 * 322.99134 * 8 7 6 10 10 H 1.08997 * 110.87015 * 277.06458 * 9 8 7 11 11 N 1.46501 * 110.71926 * 153.86613 * 9 8 7 12 12 C 1.36929 * 120.00232 * 91.47546 * 11 9 8 13 13 H 1.08009 * 119.99845 * 0.02562 * 12 11 9 14 14 C 1.38805 * 120.00423 * 179.97438 * 12 11 9 15 15 N 1.31615 * 120.00720 * 180.02562 * 14 12 11 16 16 Si 1.86807 * 119.99705 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46845 * 90.00048 * 16 14 12 18 18 H 1.48499 * 109.47166 * 209.99816 * 16 14 12 19 19 H 1.48492 * 109.47378 * 330.00283 * 16 14 12 20 20 C 1.47019 * 125.64407 * 179.97438 * 6 4 2 21 21 N 1.46897 * 109.47018 * 240.00198 * 2 1 3 22 22 C 1.47020 * 110.99949 * 75.95036 * 21 2 1 23 23 C 1.53102 * 109.25631 * 177.60855 * 22 21 2 24 24 O 1.43014 * 109.26011 * 56.84837 * 23 22 21 25 25 C 1.43014 * 113.73919 * 301.33183 * 24 23 22 26 26 C 1.47010 * 111.00180 * 312.31658 * 21 2 1 27 27 H 1.08996 * 109.47311 * 59.99981 * 1 2 3 28 28 H 1.08996 * 109.47266 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46756 * 299.99933 * 1 2 3 30 30 H 1.09000 * 110.36864 * 323.00528 * 7 6 4 31 31 H 1.08999 * 110.36391 * 85.21784 * 7 6 4 32 32 H 1.09001 * 111.00568 * 204.91855 * 8 7 6 33 33 H 1.09002 * 111.00242 * 81.06674 * 8 7 6 34 34 H 0.97002 * 119.99893 * 271.19970 * 11 9 8 35 35 H 0.97000 * 120.00812 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.88593 * 59.48311 * 20 6 4 37 37 H 1.09003 * 109.88699 * 298.32093 * 20 6 4 38 38 H 1.08994 * 109.50929 * 297.54071 * 22 21 2 39 39 H 1.08997 * 109.50176 * 57.68177 * 22 21 2 40 40 H 1.09004 * 109.50438 * 296.91698 * 23 22 21 41 41 H 1.08998 * 109.50658 * 176.78722 * 23 22 21 42 42 H 1.09005 * 109.50657 * 298.72977 * 25 24 23 43 43 H 1.09002 * 109.54264 * 178.62735 * 25 24 23 44 44 H 1.09007 * 109.50892 * 302.32972 * 26 21 2 45 45 H 1.09002 * 109.50819 * 62.45808 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.4596 -1.8423 1.1451 6 7 2.0068 -0.0880 2.4256 7 6 1.5172 1.2807 2.6713 8 6 2.2421 1.7354 3.9625 9 6 2.2692 0.4196 4.7844 10 1 1.3269 0.2717 5.3118 11 7 3.3928 0.4187 5.7245 12 6 3.2203 0.8913 6.9980 13 1 2.2558 1.2643 7.3096 14 6 4.2848 0.8900 7.8889 15 7 4.1189 1.3437 9.1132 16 14 5.9524 0.2428 7.3507 17 1 6.7542 1.3549 6.7799 18 1 6.6631 -0.3292 8.5224 19 1 5.7657 -0.8115 6.3218 20 6 2.4631 -0.6614 3.7001 21 7 2.0196 -0.6924 -1.1994 22 6 1.8811 0.1568 -2.3915 23 6 2.4565 -0.5784 -3.6049 24 8 1.7900 -1.8349 -3.7548 25 6 1.9050 -2.6875 -2.6124 26 6 1.3241 -1.9737 -1.3890 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.7805 1.9330 1.8387 31 1 0.4377 1.2760 2.8219 32 1 1.6720 2.5072 4.4795 33 1 3.2527 2.0796 3.7427 34 1 4.2579 0.0796 5.4460 35 1 4.8627 1.3425 9.7359 36 1 3.5170 -0.9305 3.6295 37 1 1.8691 -1.5422 3.9442 38 1 0.8268 0.3735 -2.5636 39 1 2.4249 1.0891 -2.2393 40 1 3.5229 -0.7477 -3.4559 41 1 2.3045 0.0234 -4.5009 42 1 2.9554 -2.9181 -2.4346 43 1 1.3547 -3.6115 -2.7902 44 1 1.4611 -2.5965 -0.5050 45 1 0.2608 -1.7911 -1.5450 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019892425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:54 Heat of formation + Delta-G solvation = -67.295559 kcal Electronic energy + Delta-G solvation = -25000.716182 eV Core-core repulsion = 21439.167288 eV Total energy + Delta-G solvation = -3561.548894 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.61388 -40.29707 -38.77254 -36.95793 -36.04981 -33.64929 -32.29315 -32.08594 -31.06851 -29.48383 -27.71717 -26.00400 -25.03803 -24.62124 -23.59119 -21.77196 -21.18777 -20.09467 -19.75398 -18.31295 -17.61954 -17.31834 -17.04304 -16.59273 -16.37528 -16.04975 -15.91679 -15.71627 -15.48148 -15.13659 -14.79867 -14.56135 -14.47186 -14.16362 -13.50955 -13.48994 -13.37839 -13.23476 -13.12363 -13.00547 -12.79240 -12.66794 -12.34646 -12.28817 -12.20125 -12.04150 -11.83436 -11.67113 -11.51169 -11.00825 -10.95989 -10.49265 -9.70771 -9.35227 -9.33730 -8.04078 -5.38397 1.38176 1.38959 1.45960 1.57999 1.81048 2.46272 2.75415 2.97079 3.25448 3.39769 3.52939 3.76305 3.83606 3.93744 3.97835 3.99942 4.10974 4.16910 4.24261 4.28676 4.32094 4.35011 4.44453 4.61546 4.63916 4.64678 4.70278 4.75982 4.82722 4.85753 4.87891 4.96922 5.00148 5.13137 5.17447 5.26761 5.40454 5.75202 5.82092 5.94772 6.16711 6.19680 6.53651 7.03800 7.14733 7.79118 7.96480 9.16790 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.030823 B = 0.003083 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.198211 B = 9079.265955 C = 9434.296887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.076 3.924 3 H 0.127 0.873 4 C 0.529 3.471 5 O -0.573 6.573 6 N -0.613 5.613 7 C 0.105 3.895 8 C -0.146 4.146 9 C 0.168 3.832 10 H 0.072 0.928 11 N -0.746 5.746 12 C -0.227 4.227 13 H 0.067 0.933 14 C -0.058 4.058 15 N -0.980 5.980 16 Si 0.947 3.053 17 H -0.278 1.278 18 H -0.297 1.297 19 H -0.260 1.260 20 C 0.108 3.892 21 N -0.537 5.537 22 C 0.019 3.981 23 C 0.059 3.941 24 O -0.402 6.402 25 C 0.067 3.933 26 C 0.015 3.985 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.364 0.636 35 H 0.258 0.742 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.104 0.896 40 H 0.052 0.948 41 H 0.122 0.878 42 H 0.048 0.952 43 H 0.110 0.890 44 H 0.082 0.918 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.683 0.021 -27.254 28.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.035 4.035 3 H 0.144 0.856 4 C 0.318 3.682 5 O -0.452 6.452 6 N -0.347 5.347 7 C -0.017 4.017 8 C -0.187 4.187 9 C 0.059 3.941 10 H 0.090 0.910 11 N -0.388 5.388 12 C -0.358 4.358 13 H 0.085 0.915 14 C -0.250 4.250 15 N -0.630 5.630 16 Si 0.775 3.225 17 H -0.204 1.204 18 H -0.224 1.224 19 H -0.185 1.185 20 C -0.017 4.017 21 N -0.262 5.262 22 C -0.109 4.109 23 C -0.017 4.017 24 O -0.321 6.321 25 C -0.010 4.010 26 C -0.112 4.112 27 H 0.106 0.894 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.121 0.879 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.197 0.803 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.122 0.878 40 H 0.071 0.929 41 H 0.140 0.860 42 H 0.066 0.934 43 H 0.128 0.872 44 H 0.101 0.899 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.158 -0.688 -27.292 28.494 hybrid contribution 0.692 -0.308 0.852 1.139 sum -7.467 -0.996 -26.440 27.492 Atomic orbital electron populations 1.22328 0.93014 1.03122 1.04837 1.21595 0.95796 0.98695 0.87433 0.85563 1.20794 0.77663 0.86013 0.83721 1.90624 1.48420 1.20533 1.85623 1.48530 1.62526 1.17179 1.06425 1.22591 0.99526 0.81231 0.98372 1.23355 1.01108 0.98793 0.95441 1.21360 0.91208 0.93092 0.88426 0.90976 1.42734 1.09464 1.76137 1.10510 1.19017 0.96978 1.32192 0.87632 0.91478 1.25392 1.01595 1.02245 0.95756 1.69849 1.32529 1.54364 1.06280 0.85530 0.80886 0.78794 0.77263 1.20374 1.22359 1.18462 1.22012 0.99078 0.96911 0.83656 1.62002 1.57242 1.04513 1.02487 1.22918 1.01340 0.97149 0.89469 1.22842 0.96092 0.84421 0.98372 1.87942 1.76077 1.28895 1.39137 1.22671 1.00716 0.93423 0.84206 1.22904 0.96510 0.91870 0.99948 0.89424 0.92667 0.89823 0.87897 0.88822 0.89421 0.91689 0.80304 0.93302 0.93334 0.91922 0.92616 0.87770 0.92937 0.85987 0.93412 0.87160 0.89950 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 8.24 71.98 0.59 -1.79 16 2 C 0.08 1.39 2.09 44.17 0.09 1.48 16 3 H 0.13 1.72 6.84 -2.39 -0.02 1.71 16 4 C 0.53 14.30 7.02 87.66 0.62 14.92 16 5 O -0.57 -20.34 14.58 -3.04 -0.04 -20.38 16 6 N -0.61 -15.93 3.33 -811.80 -2.70 -18.63 16 7 C 0.10 2.00 6.00 86.86 0.52 2.52 16 8 C -0.15 -3.97 6.77 31.99 0.22 -3.75 16 9 C 0.17 5.81 3.61 46.18 0.17 5.98 16 10 H 0.07 2.54 8.09 -2.39 -0.02 2.52 16 11 N -0.75 -33.31 5.03 -317.32 -1.60 -34.91 16 12 C -0.23 -12.37 10.44 84.03 0.88 -11.49 16 13 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16 14 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 15 N -0.98 -61.49 13.97 21.65 0.30 -61.19 16 16 Si 0.95 45.26 27.74 68.60 1.90 47.16 16 17 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 18 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 19 H -0.26 -11.52 6.51 99.48 0.65 -10.87 16 20 C 0.11 3.47 6.62 86.73 0.57 4.04 16 21 N -0.54 -10.69 4.44 -874.37 -3.88 -14.57 16 22 C 0.02 0.25 5.44 86.31 0.47 0.72 16 23 C 0.06 0.86 7.01 72.02 0.50 1.37 16 24 O -0.40 -7.88 10.83 -148.98 -1.61 -9.50 16 25 C 0.07 1.30 7.01 72.01 0.50 1.80 16 26 C 0.02 0.32 4.50 86.31 0.39 0.71 16 27 H 0.09 0.88 7.00 -2.39 -0.02 0.87 16 28 H 0.05 0.92 6.37 -2.39 -0.02 0.91 16 29 H 0.08 0.97 6.96 -2.38 -0.02 0.95 16 30 H 0.10 1.36 7.00 -2.39 -0.02 1.35 16 31 H 0.09 1.40 7.67 -2.39 -0.02 1.38 16 32 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.36 16.17 5.42 -92.71 -0.50 15.67 16 35 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 36 H 0.05 1.74 7.71 -2.39 -0.02 1.73 16 37 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.06 0.66 6.99 -2.39 -0.02 0.65 16 39 H 0.10 1.05 8.04 -2.39 -0.02 1.03 16 40 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 41 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.08 2.18 5.88 -2.38 -0.01 2.17 16 45 H 0.05 0.97 6.36 -2.39 -0.02 0.95 16 Total: -1.00 -72.59 344.57 -1.22 -73.80 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 0.43 Total: 24.57 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 5.99 Total: 13.64 kcal Atomic # 7 Polarization: -121.42 SS G_CDS: -7.88 Total: -129.30 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -1.66 Total: -29.88 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.90 Total: 47.16 kcal Total: -72.59 -1.22 -73.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019892425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.509 kcal (2) G-P(sol) polarization free energy of solvation -72.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds