Wall clock time and date at job start Tue Mar 31 2020 03:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46902 * 109.46812 * 2 1 4 4 C 1.47012 * 111.00218 * 289.56535 * 3 2 1 5 5 C 1.53099 * 109.25724 * 177.60793 * 4 3 2 6 6 O 1.43015 * 109.25854 * 56.85219 * 5 4 3 7 7 C 1.43014 * 113.73764 * 301.32564 * 6 5 4 8 8 C 1.47012 * 110.99931 * 165.92832 * 3 2 1 9 9 H 1.09001 * 109.50708 * 62.45994 * 8 3 2 10 10 C 1.50699 * 109.50955 * 302.33109 * 8 3 2 11 11 O 1.21280 * 119.99586 * 331.84686 * 10 8 3 12 12 N 1.34779 * 120.00094 * 151.85420 * 10 8 3 13 13 C 1.46503 * 119.99371 * 179.97438 * 12 10 8 14 14 H 1.08991 * 112.85323 * 336.18958 * 13 12 10 15 15 C 1.53783 * 113.61376 * 107.50375 * 13 12 10 16 16 C 1.53784 * 87.08216 * 89.10981 * 15 13 12 17 17 H 1.08999 * 113.61238 * 270.88239 * 16 15 13 18 18 N 1.46502 * 113.68806 * 139.99130 * 16 15 13 19 19 C 1.36939 * 119.99800 * 107.46949 * 18 16 15 20 20 H 1.08009 * 120.00063 * 359.97438 * 19 18 16 21 21 C 1.38806 * 120.00042 * 179.97438 * 19 18 16 22 22 N 1.31618 * 119.99954 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00267 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47010 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47008 * 119.99880 * 23 21 19 26 26 H 1.48502 * 109.47331 * 240.00153 * 23 21 19 27 27 C 1.53780 * 87.08231 * 25.43188 * 16 15 13 28 28 H 1.09000 * 109.46534 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46998 * 59.99945 * 1 2 3 30 30 H 1.08997 * 109.46649 * 299.99838 * 1 2 3 31 31 H 1.08994 * 109.47445 * 119.99796 * 2 1 3 32 32 H 1.08998 * 109.47031 * 240.00540 * 2 1 3 33 33 H 1.08998 * 109.50696 * 297.53994 * 4 3 2 34 34 H 1.09000 * 109.50782 * 57.67599 * 4 3 2 35 35 H 1.09003 * 109.50648 * 296.91232 * 5 4 3 36 36 H 1.09001 * 109.54048 * 176.80244 * 5 4 3 37 37 H 1.09006 * 109.50496 * 298.74107 * 7 6 5 38 38 H 1.08995 * 109.54718 * 178.62895 * 7 6 5 39 39 H 0.96998 * 119.99966 * 359.97438 * 12 10 8 40 40 H 1.08994 * 113.61345 * 203.65778 * 15 13 12 41 41 H 1.08999 * 113.61129 * 334.56180 * 15 13 12 42 42 H 0.96988 * 120.00146 * 287.46542 * 18 16 15 43 43 H 0.97004 * 119.99902 * 179.97438 * 22 21 19 44 44 H 1.08998 * 113.61773 * 220.01676 * 27 16 15 45 45 H 1.09004 * 113.61169 * 89.11033 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7619 2.0350 -1.2932 5 6 2.2325 3.4905 -1.2295 6 8 3.6173 3.5233 -0.8735 7 6 3.9042 2.8995 0.3810 8 6 3.4504 1.4380 0.3337 9 1 4.0214 0.9042 -0.4260 10 6 3.6777 0.7968 1.6784 11 8 2.7947 0.8023 2.5098 12 7 4.8622 0.2173 1.9571 13 6 5.0832 -0.4056 3.2646 14 1 4.4331 -0.0023 4.0408 15 6 5.1102 -1.9425 3.2180 16 6 6.6215 -1.8296 2.9568 17 1 6.8775 -1.7555 1.8999 18 7 7.4181 -2.8340 3.6661 19 6 7.9875 -3.8696 2.9743 20 1 7.8490 -3.9462 1.9059 21 6 8.7427 -4.8209 3.6462 22 7 8.9119 -4.7272 4.9481 23 14 9.5189 -6.2340 2.7028 24 1 9.1804 -6.1123 1.2620 25 1 10.9936 -6.1903 2.8707 26 1 8.9990 -7.5230 3.2257 27 6 6.5642 -0.4703 3.6735 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 0.5138 0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8934 -0.5137 -0.8900 33 1 2.3059 1.5107 -2.0789 34 1 0.6937 2.0070 -1.5082 35 1 1.6513 4.0285 -0.4806 36 1 2.0959 3.9608 -2.2033 37 1 3.3715 3.4204 1.1767 38 1 4.9763 2.9417 0.5725 39 1 5.5683 0.2126 1.2920 40 1 4.8657 -2.4125 4.1706 41 1 4.5528 -2.3638 2.3815 42 1 7.5422 -2.7653 4.6255 43 1 9.4393 -5.3923 5.4178 44 1 7.1806 0.2968 3.2048 45 1 6.7171 -0.5379 4.7507 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020330434.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:11 Heat of formation + Delta-G solvation = -35.646942 kcal Electronic energy + Delta-G solvation = -24717.827137 eV Core-core repulsion = 21157.650630 eV Total energy + Delta-G solvation = -3560.176507 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.77713 -39.30971 -37.84632 -36.25648 -34.07671 -32.86862 -31.69549 -31.13837 -29.84696 -26.99266 -25.42878 -25.16550 -24.34132 -22.50171 -22.25499 -21.44399 -20.19004 -18.98522 -17.68345 -17.10892 -16.85115 -16.64379 -15.82860 -15.42704 -15.26639 -15.01561 -14.77141 -14.45221 -14.34267 -13.91339 -13.70090 -13.59403 -13.12114 -12.69881 -12.57621 -12.22601 -12.10429 -11.95170 -11.89814 -11.73538 -11.63861 -11.14633 -10.94034 -10.87357 -10.81271 -10.35798 -10.23934 -10.17842 -9.94696 -9.65291 -9.59385 -8.95328 -8.83428 -8.69350 -7.01830 -5.83339 -3.12545 2.49883 2.92796 3.37287 3.39140 3.44801 3.47098 3.64416 4.44935 4.53036 4.54620 4.59234 4.69804 4.81382 4.85225 5.00730 5.03409 5.14121 5.17505 5.20109 5.29764 5.34801 5.40167 5.41409 5.46061 5.56191 5.64390 5.79872 5.82969 5.88360 6.03321 6.09109 6.21897 6.28305 6.45214 6.53141 6.58996 6.64397 6.65221 6.72765 7.03916 7.53438 7.64362 8.21948 8.35007 9.46418 10.03531 10.37861 11.39002 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.023058 B = 0.002944 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.048395 B = 9508.576952 C = 9689.312208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.046 3.954 3 N -0.514 5.514 4 C 0.017 3.983 5 C 0.061 3.939 6 O -0.379 6.379 7 C 0.078 3.922 8 C 0.031 3.969 9 H 0.069 0.931 10 C 0.519 3.481 11 O -0.518 6.518 12 N -0.706 5.706 13 C 0.116 3.884 14 H 0.096 0.904 15 C -0.175 4.175 16 C 0.166 3.834 17 H 0.073 0.927 18 N -0.712 5.712 19 C -0.245 4.245 20 H 0.071 0.929 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.159 4.159 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.033 0.967 33 H 0.044 0.956 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.400 0.600 40 H 0.086 0.914 41 H 0.056 0.944 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.064 0.936 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.960 16.068 -12.268 24.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.081 4.081 3 N -0.240 5.240 4 C -0.111 4.111 5 C -0.016 4.016 6 O -0.297 6.297 7 C 0.000 4.000 8 C -0.081 4.081 9 H 0.087 0.913 10 C 0.304 3.696 11 O -0.393 6.393 12 N -0.357 5.357 13 C 0.011 3.989 14 H 0.114 0.886 15 C -0.218 4.218 16 C 0.054 3.946 17 H 0.091 0.909 18 N -0.350 5.350 19 C -0.377 4.377 20 H 0.089 0.911 21 C -0.208 4.208 22 N -0.579 5.579 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.199 4.199 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.111 0.889 35 H 0.081 0.919 36 H 0.118 0.882 37 H 0.087 0.913 38 H 0.123 0.877 39 H 0.234 0.766 40 H 0.105 0.895 41 H 0.074 0.926 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.622 16.256 -11.526 24.717 hybrid contribution 1.045 -1.557 -0.942 2.098 sum -13.577 14.700 -12.468 23.577 Atomic orbital electron populations 1.21713 0.94309 1.01661 1.02301 1.22205 0.96834 0.87730 1.01351 1.62018 1.13466 1.18389 1.30157 1.22886 1.02450 0.95818 0.89967 1.22729 0.82394 0.95104 1.01409 1.88017 1.25455 1.78236 1.37980 1.22541 1.01510 0.89068 0.86894 1.22319 0.91144 0.98944 0.95726 0.91302 1.20086 0.82487 0.78469 0.88604 1.90715 1.42498 1.57801 1.48257 1.45783 1.15270 1.57435 1.17251 1.21835 0.98028 0.94648 0.84431 0.88565 1.24302 1.01757 0.93489 1.02221 1.21618 0.89512 0.87951 0.95505 0.90913 1.42405 1.58649 1.26384 1.07560 1.19330 1.24564 1.01655 0.92116 0.91087 1.24771 1.00924 0.99417 0.95716 1.69668 1.44562 1.37017 1.06648 0.86122 0.78874 0.82371 0.78832 1.20538 1.21792 1.21804 1.23861 0.93826 0.99894 1.02287 0.92170 0.93019 0.91496 0.89776 0.94858 0.93747 0.88914 0.91920 0.88176 0.91304 0.87722 0.76559 0.89545 0.92561 0.77989 0.93439 0.91693 0.88981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.93 37.16 0.37 -0.95 16 2 C 0.05 0.50 5.36 -3.82 -0.02 0.48 16 3 N -0.51 -5.54 4.24 -227.72 -0.97 -6.50 16 4 C 0.02 0.14 5.46 -3.71 -0.02 0.12 16 5 C 0.06 0.48 7.01 37.21 0.26 0.74 16 6 O -0.38 -3.80 10.83 -35.23 -0.38 -4.18 16 7 C 0.08 0.75 6.27 37.21 0.23 0.99 16 8 C 0.03 0.33 2.38 -68.75 -0.16 0.17 16 9 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 10 C 0.52 6.81 5.76 -10.98 -0.06 6.75 16 11 O -0.52 -8.69 15.17 5.56 0.08 -8.61 16 12 N -0.71 -8.69 5.26 -53.01 -0.28 -8.97 16 13 C 0.12 1.69 4.32 -67.11 -0.29 1.40 16 14 H 0.10 1.49 7.46 -51.93 -0.39 1.11 16 15 C -0.18 -3.02 7.68 -25.92 -0.20 -3.21 16 16 C 0.17 3.11 4.35 -67.12 -0.29 2.82 16 17 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 18 N -0.71 -17.36 5.40 -52.63 -0.28 -17.64 16 19 C -0.25 -6.68 9.97 -15.06 -0.15 -6.83 16 20 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 23 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 C -0.16 -2.43 7.58 -25.91 -0.20 -2.63 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.40 6.66 -51.93 -0.35 0.05 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.13 5.98 -51.93 -0.31 0.82 16 32 H 0.03 0.34 8.07 -51.93 -0.42 -0.08 16 33 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.64 6.55 -51.93 -0.34 0.30 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.40 4.09 8.70 -40.82 -0.36 3.74 16 40 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.39 10.01 7.92 -40.82 -0.32 9.68 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.09 1.46 8.12 -51.93 -0.42 1.04 16 LS Contribution 359.69 15.07 5.42 5.42 Total: -1.00 -32.12 359.69 -8.85 -40.98 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -7.52 Total: 10.11 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -0.63 Total: -0.59 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: -0.80 Total: -60.16 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -0.30 Total: -12.79 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.12 -8.85 -40.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020330434.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.328 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds