Wall clock time and date at job start Tue Mar 31 2020 03:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46902 * 109.46812 * 2 1 4 4 C 1.47012 * 111.00218 * 289.56535 * 3 2 1 5 5 C 1.53099 * 109.25724 * 177.60793 * 4 3 2 6 6 O 1.43015 * 109.25854 * 56.85219 * 5 4 3 7 7 C 1.43014 * 113.73764 * 301.32564 * 6 5 4 8 8 C 1.47012 * 110.99931 * 165.92832 * 3 2 1 9 9 H 1.09001 * 109.50708 * 62.45994 * 8 3 2 10 10 C 1.50699 * 109.50955 * 302.33109 * 8 3 2 11 11 O 1.21280 * 119.99586 * 331.84686 * 10 8 3 12 12 N 1.34779 * 120.00094 * 151.85420 * 10 8 3 13 13 C 1.46503 * 119.99371 * 179.97438 * 12 10 8 14 14 H 1.08991 * 112.85323 * 336.18958 * 13 12 10 15 15 C 1.53783 * 113.61376 * 107.50375 * 13 12 10 16 16 C 1.53784 * 87.08216 * 89.10981 * 15 13 12 17 17 H 1.08999 * 113.61238 * 270.88239 * 16 15 13 18 18 N 1.46502 * 113.68806 * 139.99130 * 16 15 13 19 19 C 1.36939 * 119.99800 * 107.46949 * 18 16 15 20 20 H 1.08009 * 120.00063 * 359.97438 * 19 18 16 21 21 C 1.38806 * 120.00042 * 179.97438 * 19 18 16 22 22 N 1.31618 * 119.99954 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00267 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47010 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47008 * 119.99880 * 23 21 19 26 26 H 1.48502 * 109.47331 * 240.00153 * 23 21 19 27 27 C 1.53780 * 87.08231 * 25.43188 * 16 15 13 28 28 H 1.09000 * 109.46534 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46998 * 59.99945 * 1 2 3 30 30 H 1.08997 * 109.46649 * 299.99838 * 1 2 3 31 31 H 1.08994 * 109.47445 * 119.99796 * 2 1 3 32 32 H 1.08998 * 109.47031 * 240.00540 * 2 1 3 33 33 H 1.08998 * 109.50696 * 297.53994 * 4 3 2 34 34 H 1.09000 * 109.50782 * 57.67599 * 4 3 2 35 35 H 1.09003 * 109.50648 * 296.91232 * 5 4 3 36 36 H 1.09001 * 109.54048 * 176.80244 * 5 4 3 37 37 H 1.09006 * 109.50496 * 298.74107 * 7 6 5 38 38 H 1.08995 * 109.54718 * 178.62895 * 7 6 5 39 39 H 0.96998 * 119.99966 * 359.97438 * 12 10 8 40 40 H 1.08994 * 113.61345 * 203.65778 * 15 13 12 41 41 H 1.08999 * 113.61129 * 334.56180 * 15 13 12 42 42 H 0.96988 * 120.00146 * 287.46542 * 18 16 15 43 43 H 0.97004 * 119.99902 * 179.97438 * 22 21 19 44 44 H 1.08998 * 113.61773 * 220.01676 * 27 16 15 45 45 H 1.09004 * 113.61169 * 89.11033 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7619 2.0350 -1.2932 5 6 2.2325 3.4905 -1.2295 6 8 3.6173 3.5233 -0.8735 7 6 3.9042 2.8995 0.3810 8 6 3.4504 1.4380 0.3337 9 1 4.0214 0.9042 -0.4260 10 6 3.6777 0.7968 1.6784 11 8 2.7947 0.8023 2.5098 12 7 4.8622 0.2173 1.9571 13 6 5.0832 -0.4056 3.2646 14 1 4.4331 -0.0023 4.0408 15 6 5.1102 -1.9425 3.2180 16 6 6.6215 -1.8296 2.9568 17 1 6.8775 -1.7555 1.8999 18 7 7.4181 -2.8340 3.6661 19 6 7.9875 -3.8696 2.9743 20 1 7.8490 -3.9462 1.9059 21 6 8.7427 -4.8209 3.6462 22 7 8.9119 -4.7272 4.9481 23 14 9.5189 -6.2340 2.7028 24 1 9.1804 -6.1123 1.2620 25 1 10.9936 -6.1903 2.8707 26 1 8.9990 -7.5230 3.2257 27 6 6.5642 -0.4703 3.6735 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 0.5138 0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8934 -0.5137 -0.8900 33 1 2.3059 1.5107 -2.0789 34 1 0.6937 2.0070 -1.5082 35 1 1.6513 4.0285 -0.4806 36 1 2.0959 3.9608 -2.2033 37 1 3.3715 3.4204 1.1767 38 1 4.9763 2.9417 0.5725 39 1 5.5683 0.2126 1.2920 40 1 4.8657 -2.4125 4.1706 41 1 4.5528 -2.3638 2.3815 42 1 7.5422 -2.7653 4.6255 43 1 9.4393 -5.3923 5.4178 44 1 7.1806 0.2968 3.2048 45 1 6.7171 -0.5379 4.7507 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020330434.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:10 Heat of formation + Delta-G solvation = -60.260102 kcal Electronic energy + Delta-G solvation = -24718.894443 eV Core-core repulsion = 21157.650630 eV Total energy + Delta-G solvation = -3561.243814 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.74238 -40.38700 -39.03431 -37.06187 -35.76887 -34.26115 -32.72559 -31.85769 -31.61104 -27.76138 -26.68912 -26.52774 -25.76394 -23.90429 -23.11794 -22.45184 -21.08603 -20.38150 -19.18768 -18.55668 -17.73139 -17.44614 -16.93919 -16.70365 -16.15799 -16.07820 -15.90019 -15.72202 -15.36157 -15.25929 -15.13851 -14.44495 -14.39433 -13.98731 -13.57387 -13.43920 -13.33194 -13.19394 -12.90847 -12.85119 -12.74761 -12.60603 -12.38848 -12.11643 -11.96195 -11.82445 -11.75167 -11.58683 -11.21076 -11.04343 -10.86278 -10.62373 -10.05622 -9.46465 -8.99824 -7.95767 -5.24276 1.46070 1.47517 1.48056 1.57738 1.93302 2.55783 2.61892 2.91022 3.36004 3.61487 3.68427 3.70460 3.82500 3.90229 3.92725 3.95308 4.04380 4.22043 4.31144 4.32197 4.33908 4.39608 4.50646 4.59497 4.64896 4.71280 4.73790 4.90158 4.91149 4.91623 4.94183 5.03114 5.12185 5.19269 5.23409 5.28003 5.50117 5.67783 5.76306 5.90838 6.03925 6.26561 6.52411 7.18958 7.32798 8.09396 8.31553 9.27732 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.023058 B = 0.002944 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.048395 B = 9508.576952 C = 9689.312208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.047 3.953 3 N -0.530 5.530 4 C 0.018 3.982 5 C 0.057 3.943 6 O -0.389 6.389 7 C 0.081 3.919 8 C 0.037 3.963 9 H 0.082 0.918 10 C 0.523 3.477 11 O -0.557 6.557 12 N -0.696 5.696 13 C 0.136 3.864 14 H 0.090 0.910 15 C -0.172 4.172 16 C 0.152 3.848 17 H 0.083 0.917 18 N -0.728 5.728 19 C -0.243 4.243 20 H 0.078 0.922 21 C -0.077 4.077 22 N -0.970 5.970 23 Si 0.971 3.029 24 H -0.264 1.264 25 H -0.293 1.293 26 H -0.296 1.296 27 C -0.142 4.142 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.042 0.958 33 H 0.049 0.951 34 H 0.108 0.892 35 H 0.060 0.940 36 H 0.126 0.874 37 H 0.057 0.943 38 H 0.122 0.878 39 H 0.414 0.586 40 H 0.069 0.931 41 H 0.053 0.947 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.089 0.911 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.281 17.240 -14.720 26.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.080 4.080 3 N -0.257 5.257 4 C -0.109 4.109 5 C -0.020 4.020 6 O -0.307 6.307 7 C 0.003 3.997 8 C -0.076 4.076 9 H 0.100 0.900 10 C 0.309 3.691 11 O -0.434 6.434 12 N -0.348 5.348 13 C 0.030 3.970 14 H 0.108 0.892 15 C -0.214 4.214 16 C 0.043 3.957 17 H 0.101 0.899 18 N -0.365 5.365 19 C -0.375 4.375 20 H 0.096 0.904 21 C -0.269 4.269 22 N -0.621 5.621 23 Si 0.800 3.200 24 H -0.189 1.189 25 H -0.220 1.220 26 H -0.224 1.224 27 C -0.181 4.181 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.126 0.874 35 H 0.078 0.922 36 H 0.144 0.856 37 H 0.075 0.925 38 H 0.140 0.860 39 H 0.250 0.750 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.206 0.794 43 H 0.060 0.940 44 H 0.107 0.893 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.961 17.472 -14.048 26.953 hybrid contribution 1.045 -1.855 -0.222 2.140 sum -13.916 15.618 -14.270 25.322 Atomic orbital electron populations 1.21672 0.93235 1.02142 1.02411 1.22147 0.97767 0.87872 1.00220 1.62034 1.13435 1.18333 1.31892 1.22973 1.03515 0.95726 0.88701 1.22923 0.81365 0.95006 1.02659 1.88011 1.26707 1.78152 1.37804 1.22547 1.02369 0.88081 0.86689 1.22299 0.91659 0.99484 0.94132 0.90003 1.20536 0.81792 0.77680 0.89140 1.90701 1.43733 1.59281 1.49703 1.45660 1.15701 1.56809 1.16664 1.21485 0.97397 0.92652 0.85474 0.89162 1.24145 1.00399 0.95621 1.01233 1.21970 0.89293 0.88471 0.96008 0.89920 1.42605 1.59445 1.27217 1.07217 1.19738 1.23261 1.01888 0.92573 0.90366 1.25565 1.02466 1.02257 0.96585 1.69819 1.46050 1.38004 1.08189 0.85106 0.77527 0.78993 0.78339 1.18860 1.22042 1.22393 1.23670 0.94474 0.98138 1.01821 0.91568 0.91082 0.93103 0.92783 0.93961 0.93316 0.87422 0.92190 0.85642 0.92476 0.86041 0.74955 0.91251 0.92800 0.79375 0.94044 0.89284 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.93 71.98 0.72 -1.66 16 2 C 0.05 0.98 5.36 86.30 0.46 1.45 16 3 N -0.53 -10.60 4.24 -874.39 -3.71 -14.31 16 4 C 0.02 0.25 5.46 86.31 0.47 0.72 16 5 C 0.06 0.75 7.01 72.02 0.50 1.25 16 6 O -0.39 -6.85 10.83 -148.98 -1.61 -8.46 16 7 C 0.08 1.41 6.27 72.02 0.45 1.87 16 8 C 0.04 0.72 2.38 44.18 0.10 0.82 16 9 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 10 C 0.52 13.14 5.76 87.66 0.50 13.65 16 11 O -0.56 -18.62 15.17 -3.03 -0.05 -18.67 16 12 N -0.70 -15.95 5.26 -440.03 -2.32 -18.27 16 13 C 0.14 3.83 4.32 45.52 0.20 4.02 16 14 H 0.09 2.75 7.46 -2.39 -0.02 2.73 16 15 C -0.17 -5.86 7.68 31.12 0.24 -5.63 16 16 C 0.15 5.56 4.35 45.52 0.20 5.76 16 17 H 0.08 2.85 8.10 -2.39 -0.02 2.83 16 18 N -0.73 -35.54 5.40 -320.44 -1.73 -37.27 16 19 C -0.24 -13.14 9.97 84.03 0.84 -12.30 16 20 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 21 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 22 N -0.97 -58.89 13.06 21.65 0.28 -58.61 16 23 Si 0.97 45.48 29.55 68.60 2.03 47.50 16 24 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 26 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 27 C -0.14 -4.12 7.58 31.12 0.24 -3.88 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 0.94 6.66 -2.39 -0.02 0.92 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 1.44 5.98 -2.39 -0.01 1.43 16 32 H 0.04 0.78 8.07 -2.39 -0.02 0.76 16 33 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.11 1.17 6.55 -2.39 -0.02 1.15 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.12 1.65 8.14 -2.39 -0.02 1.64 16 39 H 0.41 7.37 8.70 -92.71 -0.81 6.57 16 40 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.37 19.77 7.92 -92.72 -0.73 19.04 16 43 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 44 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.09 2.68 8.12 -2.38 -0.02 2.66 16 Total: -1.00 -69.48 359.69 -2.27 -71.75 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: -0.55 Total: 34.13 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 5.39 Total: 2.20 kcal Atomic # 7 Polarization: -120.98 SS G_CDS: -7.47 Total: -128.46 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -1.66 Total: -27.13 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -69.48 -2.27 -71.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020330434.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.489 kcal (2) G-P(sol) polarization free energy of solvation -69.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds