Wall clock time and date at job start Tue Mar 31 2020 03:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46904 * 109.46631 * 2 1 4 4 C 1.47009 * 111.00329 * 66.04503 * 3 2 1 5 5 C 1.53094 * 109.25897 * 177.60436 * 4 3 2 6 6 O 1.43024 * 109.25658 * 56.84898 * 5 4 3 7 7 C 1.43013 * 113.73952 * 301.33118 * 6 5 4 8 8 H 1.09001 * 109.50501 * 298.69202 * 7 6 5 9 9 C 1.50697 * 109.50805 * 178.60875 * 7 6 5 10 10 O 1.21278 * 119.99699 * 354.99108 * 9 7 6 11 11 N 1.34773 * 120.00099 * 174.99982 * 9 7 6 12 12 C 1.46504 * 120.00156 * 179.97438 * 11 9 7 13 13 H 1.09002 * 112.84688 * 336.19951 * 12 11 9 14 14 C 1.53953 * 113.66284 * 107.43671 * 12 11 9 15 15 C 1.53788 * 87.01728 * 139.93398 * 14 12 11 16 16 H 1.08998 * 113.60981 * 89.23019 * 15 14 12 17 17 N 1.46490 * 113.61484 * 220.04782 * 15 14 12 18 18 C 1.36935 * 120.00121 * 254.13346 * 17 15 14 19 19 H 1.07997 * 120.00139 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00401 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99569 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00172 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.46685 * 269.99637 * 22 20 18 24 24 H 1.48494 * 109.47357 * 29.99716 * 22 20 18 25 25 H 1.48502 * 109.47120 * 150.00435 * 22 20 18 26 26 C 1.53781 * 87.17351 * 334.63993 * 15 14 12 27 27 C 1.47012 * 110.99805 * 302.40626 * 3 2 1 28 28 H 1.08992 * 109.47478 * 299.99918 * 1 2 3 29 29 H 1.09001 * 109.47284 * 60.00908 * 1 2 3 30 30 H 1.09010 * 109.46732 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47000 * 239.99995 * 2 1 3 32 32 H 1.08997 * 109.46958 * 119.99457 * 2 1 3 33 33 H 1.09004 * 109.50897 * 57.67021 * 4 3 2 34 34 H 1.09001 * 109.54313 * 297.56166 * 4 3 2 35 35 H 1.08995 * 109.51009 * 296.91675 * 5 4 3 36 36 H 1.09003 * 109.50837 * 176.78012 * 5 4 3 37 37 H 0.97001 * 119.99893 * 359.97438 * 11 9 7 38 38 H 1.08999 * 113.61553 * 25.42321 * 14 12 11 39 39 H 1.09000 * 113.66951 * 254.46058 * 14 12 11 40 40 H 0.97000 * 120.00577 * 74.13945 * 17 15 14 41 41 H 0.97001 * 119.99885 * 359.97438 * 21 20 18 42 42 H 1.09001 * 113.61675 * 139.93587 * 26 15 14 43 43 H 1.08999 * 113.61102 * 270.75850 * 26 15 14 44 44 H 1.09002 * 109.50722 * 62.46040 * 27 3 2 45 45 H 1.08996 * 109.51253 * 302.32917 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6698 2.0676 1.2542 5 6 2.2491 3.4846 1.2366 6 8 1.7593 4.1801 0.0868 7 6 2.0825 3.5434 -1.1523 8 1 3.1656 3.4937 -1.2643 9 6 1.4945 4.3337 -2.2927 10 8 0.7854 5.2909 -2.0649 11 7 1.7565 3.9769 -3.5656 12 6 1.1844 4.7449 -4.6743 13 1 0.2800 5.2845 -4.3930 14 6 2.2136 5.6133 -5.4204 15 6 1.5011 5.2001 -6.7191 16 1 0.6837 5.8645 -6.9990 17 7 2.4169 4.9259 -7.8291 18 6 2.5356 5.8235 -8.8564 19 1 1.9545 6.7337 -8.8481 20 6 3.4030 5.5635 -9.9086 21 7 4.1109 4.4538 -9.9191 22 14 3.5655 6.7883 -11.3096 23 1 2.5779 6.4617 -12.3696 24 1 3.3099 8.1596 -10.8005 25 1 4.9377 6.7170 -11.8728 26 6 1.0401 3.9361 -5.9742 27 6 1.5016 2.1269 -1.1588 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0278 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 2.0849 1.5151 2.0973 34 1 0.5853 2.1189 1.3512 35 1 3.3370 3.4326 1.1943 36 1 1.9441 4.0138 2.1394 37 1 2.3239 3.2115 -3.7477 38 1 3.2353 5.2408 -5.3455 39 1 2.1324 6.6771 -5.1973 40 1 2.9391 4.1085 -7.8366 41 1 4.0267 3.8180 -9.1913 42 1 0.0129 3.6480 -6.1975 43 1 1.7397 3.1039 -6.0521 44 1 0.4144 2.1791 -1.1011 45 1 1.7940 1.6179 -2.0772 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023115671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:19 Heat of formation + Delta-G solvation = -63.588727 kcal Electronic energy + Delta-G solvation = -24380.437939 eV Core-core repulsion = 20819.049785 eV Total energy + Delta-G solvation = -3561.388154 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.63753 -40.47135 -39.20770 -37.31381 -36.11765 -34.58111 -32.57193 -31.72705 -31.35107 -28.01098 -26.64273 -26.31991 -25.71310 -24.30504 -23.50719 -21.73072 -21.06998 -20.81996 -19.49389 -18.54181 -17.98811 -17.18983 -17.06455 -16.74785 -16.44559 -16.06532 -15.97381 -15.61844 -15.57643 -15.35513 -15.03171 -14.81891 -14.56670 -13.83775 -13.76342 -13.42017 -13.40813 -12.96326 -12.87205 -12.81230 -12.67729 -12.45696 -12.25350 -12.15116 -11.94444 -11.86043 -11.82829 -11.61259 -11.21138 -10.91070 -10.85623 -10.75553 -10.11351 -9.45388 -9.09948 -8.39277 -5.33196 1.39894 1.59278 1.69305 1.74177 1.83672 2.67613 2.71328 2.99252 3.37239 3.56674 3.58099 3.65201 3.74450 3.82978 3.86423 3.94373 4.04780 4.10389 4.18822 4.20772 4.27664 4.36496 4.43978 4.53991 4.61610 4.63727 4.75543 4.77772 4.80243 4.86062 4.94508 4.98904 5.02469 5.06033 5.25609 5.25929 5.52853 5.62701 5.80317 5.91894 5.97717 6.46103 6.51149 7.09135 7.11107 7.99884 8.10490 9.12874 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.028751 B = 0.002639 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.645811 B =10608.363358 C =11022.895971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.050 3.950 3 N -0.536 5.536 4 C 0.014 3.986 5 C 0.056 3.944 6 O -0.390 6.390 7 C 0.082 3.918 8 H 0.108 0.892 9 C 0.519 3.481 10 O -0.570 6.570 11 N -0.697 5.697 12 C 0.138 3.862 13 H 0.105 0.895 14 C -0.171 4.171 15 C 0.153 3.847 16 H 0.075 0.925 17 N -0.735 5.735 18 C -0.335 4.335 19 H 0.065 0.935 20 C -0.103 4.103 21 N -0.975 5.975 22 Si 1.128 2.872 23 H -0.284 1.284 24 H -0.276 1.276 25 H -0.293 1.293 26 C -0.136 4.136 27 C 0.033 3.967 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.040 0.960 35 H 0.070 0.930 36 H 0.117 0.883 37 H 0.416 0.584 38 H 0.073 0.927 39 H 0.051 0.949 40 H 0.363 0.637 41 H 0.246 0.754 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.041 0.959 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.252 -10.725 24.377 27.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.077 4.077 3 N -0.261 5.261 4 C -0.114 4.114 5 C -0.020 4.020 6 O -0.308 6.308 7 C 0.021 3.979 8 H 0.125 0.875 9 C 0.305 3.695 10 O -0.448 6.448 11 N -0.349 5.349 12 C 0.033 3.967 13 H 0.123 0.877 14 C -0.213 4.213 15 C 0.043 3.957 16 H 0.093 0.907 17 N -0.375 5.375 18 C -0.466 4.466 19 H 0.083 0.917 20 C -0.294 4.294 21 N -0.623 5.623 22 Si 0.953 3.047 23 H -0.210 1.210 24 H -0.201 1.201 25 H -0.219 1.219 26 C -0.176 4.176 27 C -0.096 4.096 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.129 0.871 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.135 0.865 37 H 0.253 0.747 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.196 0.804 41 H 0.057 0.943 42 H 0.103 0.897 43 H 0.111 0.889 44 H 0.060 0.940 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.723 -9.362 23.073 25.344 hybrid contribution -1.069 -0.889 1.351 1.939 sum -5.792 -10.251 24.425 27.114 Atomic orbital electron populations 1.22422 0.98094 1.03103 1.01496 1.22276 0.92965 0.88127 1.04354 1.62495 1.58724 1.03072 1.01761 1.22891 0.99418 0.95648 0.93473 1.23003 0.99297 0.91773 0.87951 1.88091 1.78854 1.50077 1.13807 1.21948 1.00641 0.91252 0.84096 0.87473 1.20617 0.80210 0.84279 0.84416 1.90696 1.39154 1.29951 1.85008 1.45775 1.51614 1.33294 1.04219 1.22164 0.96926 0.93642 0.83988 0.87692 1.24207 0.99291 0.99414 0.98398 1.21595 0.92183 0.96405 0.85509 0.90742 1.42492 1.49207 1.23074 1.22738 1.20456 1.22899 1.01703 1.01561 0.91701 1.27140 0.96288 1.02546 1.03458 1.70967 1.44815 1.11449 1.35056 0.82610 0.76080 0.72977 0.73038 1.21040 1.20148 1.21947 1.23648 1.02802 0.97874 0.93238 1.22627 0.98056 0.92196 0.96684 0.92907 0.93422 0.90664 0.89520 0.88861 0.87071 0.94155 0.91152 0.86475 0.74714 0.90849 0.93008 0.80383 0.94341 0.89680 0.88933 0.94043 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.14 9.20 71.98 0.66 -1.47 16 2 C 0.05 0.51 6.10 86.30 0.53 1.04 16 3 N -0.54 -7.35 4.94 -895.23 -4.42 -11.77 16 4 C 0.01 0.17 5.33 86.31 0.46 0.63 16 5 C 0.06 0.86 7.01 72.01 0.50 1.37 16 6 O -0.39 -9.67 10.01 -130.02 -1.30 -10.97 16 7 C 0.08 1.75 3.22 29.88 0.10 1.85 16 8 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 9 C 0.52 14.36 7.18 87.66 0.63 14.99 16 10 O -0.57 -21.39 16.11 15.94 0.26 -21.14 16 11 N -0.70 -16.56 5.32 -439.76 -2.34 -18.90 16 12 C 0.14 3.96 4.24 45.58 0.19 4.15 16 13 H 0.11 3.24 7.46 -2.39 -0.02 3.22 16 14 C -0.17 -5.97 7.69 31.18 0.24 -5.73 16 15 C 0.15 5.91 4.47 45.52 0.20 6.12 16 16 H 0.07 2.94 8.11 -2.39 -0.02 2.92 16 17 N -0.74 -36.12 5.41 -320.46 -1.73 -37.85 16 18 C -0.33 -18.71 9.97 84.03 0.84 -17.87 16 19 H 0.06 3.57 7.83 -2.91 -0.02 3.55 16 20 C -0.10 -5.94 5.50 84.86 0.47 -5.47 16 21 N -0.97 -60.20 13.70 21.65 0.30 -59.90 16 22 Si 1.13 51.97 29.92 68.60 2.05 54.02 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 24 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 26 C -0.14 -3.93 7.58 31.12 0.24 -3.70 16 27 C 0.03 0.55 4.37 86.31 0.38 0.92 16 28 H 0.05 0.63 6.61 -2.39 -0.02 0.62 16 29 H 0.05 0.65 6.42 -2.39 -0.02 0.64 16 30 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.09 0.71 8.11 -2.39 -0.02 0.69 16 33 H 0.11 0.91 8.12 -2.38 -0.02 0.89 16 34 H 0.04 0.59 6.59 -2.39 -0.02 0.58 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.42 7.36 8.61 -92.71 -0.80 6.56 16 38 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.36 18.27 6.74 -92.71 -0.62 17.65 16 41 H 0.25 14.97 6.77 -92.71 -0.63 14.34 16 42 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.09 2.51 8.09 -2.39 -0.02 2.49 16 44 H 0.04 0.81 6.40 -2.39 -0.02 0.79 16 45 H 0.11 1.40 8.02 -2.39 -0.02 1.38 16 Total: -1.00 -74.67 357.60 -2.04 -76.71 By element: Atomic # 1 Polarization: 33.27 SS G_CDS: -0.29 Total: 32.98 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 5.43 Total: -3.17 kcal Atomic # 7 Polarization: -120.23 SS G_CDS: -8.20 Total: -128.42 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -1.04 Total: -32.11 kcal Atomic # 14 Polarization: 51.97 SS G_CDS: 2.05 Total: 54.02 kcal Total: -74.67 -2.04 -76.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023115671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.118 kcal (2) G-P(sol) polarization free energy of solvation -74.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds