Wall clock time and date at job start Tue Mar 31 2020 03:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.47036 * 2 1 4 4 C 1.47014 * 111.03763 * 46.34348 * 3 2 1 5 5 C 1.53094 * 109.29450 * 182.34845 * 4 3 2 6 6 O 1.43015 * 109.25878 * 303.17597 * 5 4 3 7 7 C 1.43016 * 113.74083 * 58.66945 * 6 5 4 8 8 H 1.09001 * 109.53766 * 61.29010 * 7 6 5 9 9 C 1.50700 * 109.50610 * 181.39463 * 7 6 5 10 10 O 1.21273 * 120.00287 * 4.78505 * 9 7 6 11 11 N 1.34781 * 119.99611 * 184.78262 * 9 7 6 12 12 C 1.46499 * 119.99697 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.46880 * 180.02562 * 12 11 9 14 14 C 1.53941 * 113.74058 * 273.73973 * 13 12 11 15 15 N 1.47818 * 86.03475 * 222.08519 * 14 13 12 16 16 C 1.36940 * 134.45462 * 204.64487 * 15 14 13 17 17 H 1.07993 * 119.99859 * 179.87004 * 16 15 14 18 18 C 1.38817 * 119.99792 * 359.86561 * 16 15 14 19 19 N 1.31615 * 120.00237 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99596 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47336 * 90.00106 * 20 18 16 22 22 H 1.48498 * 109.46826 * 210.00152 * 20 18 16 23 23 H 1.48499 * 109.47294 * 329.99778 * 20 18 16 24 24 C 1.47572 * 91.05026 * 24.54961 * 15 14 13 25 25 C 1.47018 * 110.99928 * 170.00534 * 3 2 1 26 26 H 1.08997 * 109.47417 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46827 * 299.99679 * 1 2 3 28 28 H 1.09000 * 109.47509 * 59.99464 * 1 2 3 29 29 H 1.09002 * 109.46827 * 240.00321 * 2 1 3 30 30 H 1.08990 * 109.47480 * 120.00440 * 2 1 3 31 31 H 1.09006 * 109.46615 * 62.41273 * 4 3 2 32 32 H 1.08994 * 109.50962 * 302.30573 * 4 3 2 33 33 H 1.09007 * 109.50740 * 183.24618 * 5 4 3 34 34 H 1.08998 * 109.51019 * 63.10795 * 5 4 3 35 35 H 0.96991 * 120.00221 * 0.02562 * 11 9 7 36 36 H 1.09002 * 109.47205 * 299.99623 * 12 11 9 37 37 H 1.09002 * 109.47239 * 59.99994 * 12 11 9 38 38 H 1.08995 * 112.94438 * 45.33132 * 13 12 11 39 39 H 1.09000 * 113.77459 * 336.34834 * 14 13 12 40 40 H 1.08999 * 113.76978 * 107.74733 * 14 13 12 41 41 H 0.97000 * 119.99680 * 179.97438 * 19 18 16 42 42 H 1.09005 * 113.76814 * 221.14701 * 24 15 14 43 43 H 1.09004 * 113.87179 * 89.77295 * 24 15 14 44 44 H 1.09002 * 109.50864 * 57.67198 * 25 3 2 45 45 H 1.09003 * 109.50425 * 297.58837 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.3025 2.1983 0.9927 5 6 1.8018 3.6436 0.9185 6 8 3.2173 3.6647 1.1219 7 6 3.9472 2.8842 0.1715 8 1 3.7773 3.2776 -0.8307 9 6 5.4181 2.9457 0.4935 10 8 5.7969 3.5212 1.4916 11 7 6.3128 2.3611 -0.3277 12 6 7.7426 2.4205 -0.0144 13 6 8.5332 1.6855 -1.0987 14 6 8.6647 0.1718 -0.8514 15 7 10.0684 0.3263 -1.2882 16 6 11.0018 -0.5153 -1.8318 17 1 11.9879 -0.1457 -2.0710 18 6 10.6804 -1.8437 -2.0753 19 7 9.4785 -2.2940 -1.7842 20 14 11.9540 -2.9919 -2.8163 21 1 12.7307 -3.6381 -1.7279 22 1 11.2705 -4.0347 -3.6229 23 1 12.8732 -2.2160 -3.6870 24 6 10.0591 1.7516 -0.9056 25 6 3.4697 1.4311 0.2382 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8898 31 1 1.4874 1.8001 1.9905 32 1 0.2335 2.1713 0.7817 33 1 1.3141 4.2374 1.6917 34 1 1.5688 4.0593 -0.0618 35 1 6.0099 1.9012 -1.1261 36 1 8.0629 3.4616 0.0255 37 1 7.9230 1.9475 0.9509 38 1 8.2072 1.9387 -2.1075 39 1 8.5592 -0.1131 0.1954 40 1 8.0591 -0.4372 -1.5224 41 1 9.2538 -3.2221 -1.9548 42 1 10.5647 2.4015 -1.6198 43 1 10.3640 1.9337 0.1250 44 1 3.9826 0.8441 -0.5236 45 1 3.6899 1.0204 1.2236 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032201712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:46 Heat of formation + Delta-G solvation = -14.875749 kcal Electronic energy + Delta-G solvation = -24419.955131 eV Core-core repulsion = 20860.679331 eV Total energy + Delta-G solvation = -3559.275800 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.47181 -38.98745 -37.89474 -36.41002 -34.41456 -32.39603 -31.85722 -31.01726 -28.98230 -27.34894 -25.61834 -24.80688 -24.55990 -22.94782 -21.88020 -20.68313 -20.38524 -19.04372 -17.46333 -16.87038 -16.72286 -16.32249 -15.80727 -15.58622 -15.37441 -15.02165 -14.82597 -14.50627 -14.30603 -13.82224 -13.78491 -13.42842 -13.07521 -12.83737 -12.49617 -12.36493 -12.17462 -11.97898 -11.62840 -11.42250 -11.33841 -11.24391 -11.01475 -11.01122 -10.72197 -10.59269 -10.00227 -9.93358 -9.77755 -9.60175 -9.42681 -8.85390 -8.81122 -8.73111 -6.89523 -5.78842 -3.10687 2.62359 2.84399 3.37976 3.42903 3.43114 3.44625 3.93101 4.43905 4.48700 4.59890 4.61615 4.77547 4.81129 4.88976 4.98105 5.10310 5.12303 5.16376 5.25092 5.30799 5.34876 5.37966 5.47967 5.54701 5.59916 5.64371 5.69704 5.80494 5.81998 6.02982 6.22907 6.34775 6.52666 6.56397 6.60641 6.62131 6.72115 6.84441 7.19509 7.33482 7.52820 7.61299 7.96276 8.30198 9.03064 9.69238 10.58202 11.38424 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.018690 B = 0.003109 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.744986 B = 9004.108892 C =10343.473231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.048 3.952 3 N -0.535 5.535 4 C 0.009 3.991 5 C 0.062 3.938 6 O -0.357 6.357 7 C 0.079 3.921 8 H 0.093 0.907 9 C 0.518 3.482 10 O -0.524 6.524 11 N -0.718 5.718 12 C 0.131 3.869 13 C -0.153 4.153 14 C 0.168 3.832 15 N -0.613 5.613 16 C -0.222 4.222 17 H 0.080 0.920 18 C -0.009 4.009 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.128 3.872 25 C 0.028 3.972 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.037 0.963 31 H 0.044 0.956 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.402 0.598 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.027 0.973 40 H 0.072 0.928 41 H 0.253 0.747 42 H 0.045 0.955 43 H 0.036 0.964 44 H 0.096 0.904 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.373 8.653 2.385 21.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.079 4.079 3 N -0.261 5.261 4 C -0.119 4.119 5 C -0.015 4.015 6 O -0.274 6.274 7 C 0.017 3.983 8 H 0.110 0.890 9 C 0.301 3.699 10 O -0.399 6.399 11 N -0.371 5.371 12 C 0.008 3.992 13 C -0.173 4.173 14 C 0.043 3.957 15 N -0.339 5.339 16 C -0.350 4.350 17 H 0.098 0.902 18 C -0.205 4.205 19 N -0.570 5.570 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.002 3.998 25 C -0.101 4.101 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.237 0.763 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.045 0.955 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.115 0.885 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.954 9.059 2.674 21.177 hybrid contribution 0.560 -1.553 -0.064 1.652 sum -18.394 7.506 2.611 20.037 Atomic orbital electron populations 1.21929 0.94788 1.02195 1.02403 1.22146 0.95859 0.88313 1.01591 1.62306 1.03264 1.11702 1.48826 1.22944 0.99903 0.94688 0.94391 1.22755 0.81098 0.95303 1.02320 1.88125 1.17562 1.69121 1.52612 1.21939 0.90189 0.91793 0.94337 0.88987 1.19999 0.86928 0.79285 0.83658 1.90717 1.80458 1.42308 1.26379 1.45968 1.07430 1.56424 1.27240 1.21481 0.77936 1.00567 0.99247 1.23809 0.96199 0.99460 0.97822 1.22356 0.86587 0.89483 0.97256 1.45983 1.11381 1.05467 1.71062 1.19041 0.92851 0.90241 1.32866 0.90247 1.24775 0.97113 0.96800 1.01806 1.69808 1.18922 1.15056 1.53170 0.86120 0.80346 0.80678 0.78629 1.21633 1.21627 1.20614 1.22484 0.91759 0.88132 0.97440 1.22691 0.89088 0.96041 1.02254 0.91895 0.92441 0.91659 0.89946 0.94439 0.93733 0.88832 0.87970 0.92046 0.76314 0.91790 0.91310 0.89122 0.95521 0.90966 0.93695 0.93632 0.94626 0.88532 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 9.18 37.16 0.34 -0.67 16 2 C 0.05 0.40 6.00 -3.82 -0.02 0.38 16 3 N -0.54 -5.04 4.88 -234.31 -1.14 -6.18 16 4 C 0.01 0.07 4.94 -3.71 -0.02 0.06 16 5 C 0.06 0.56 7.01 37.21 0.26 0.82 16 6 O -0.36 -4.73 10.01 -55.06 -0.55 -5.28 16 7 C 0.08 0.95 3.22 -27.83 -0.09 0.86 16 8 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 9 C 0.52 7.67 7.18 -10.98 -0.08 7.59 16 10 O -0.52 -10.02 16.51 -14.27 -0.24 -10.26 16 11 N -0.72 -9.63 5.52 -60.29 -0.33 -9.96 16 12 C 0.13 2.02 5.51 -4.04 -0.02 2.00 16 13 C -0.15 -2.67 3.93 -89.70 -0.35 -3.02 16 14 C 0.17 3.79 7.08 -2.84 -0.02 3.77 16 15 N -0.61 -15.53 3.70 -177.71 -0.66 -16.19 16 16 C -0.22 -6.22 10.70 -15.06 -0.16 -6.38 16 17 H 0.08 2.15 7.83 -52.49 -0.41 1.73 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 19 N -0.92 -26.97 11.39 55.49 0.63 -26.34 16 20 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.13 2.56 8.51 -2.97 -0.03 2.53 16 25 C 0.03 0.30 4.86 -3.71 -0.02 0.28 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.35 6.28 -51.93 -0.33 0.02 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 31 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.61 6.06 -51.93 -0.31 0.30 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.40 4.50 8.34 -40.82 -0.34 4.16 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.16 7.88 -51.93 -0.41 0.75 16 38 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 39 H 0.03 0.63 7.92 -51.93 -0.41 0.22 16 40 H 0.07 1.77 7.16 -51.93 -0.37 1.40 16 41 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 44 H 0.10 0.94 8.01 -51.93 -0.42 0.52 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 360.02 15.07 5.43 5.43 Total: -1.00 -34.03 360.02 -9.81 -43.84 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -7.63 Total: 0.07 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -0.30 Total: 7.88 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: -1.50 Total: -58.68 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.79 Total: -15.54 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.03 -9.81 -43.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032201712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.967 kcal (2) G-P(sol) polarization free energy of solvation -34.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds