Wall clock time and date at job start Tue Mar 31 2020 03:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.47036 * 2 1 4 4 C 1.47014 * 111.03763 * 46.34348 * 3 2 1 5 5 C 1.53094 * 109.29450 * 182.34845 * 4 3 2 6 6 O 1.43015 * 109.25878 * 303.17597 * 5 4 3 7 7 C 1.43016 * 113.74083 * 58.66945 * 6 5 4 8 8 H 1.09001 * 109.53766 * 61.29010 * 7 6 5 9 9 C 1.50700 * 109.50610 * 181.39463 * 7 6 5 10 10 O 1.21273 * 120.00287 * 4.78505 * 9 7 6 11 11 N 1.34781 * 119.99611 * 184.78262 * 9 7 6 12 12 C 1.46499 * 119.99697 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.46880 * 180.02562 * 12 11 9 14 14 C 1.53941 * 113.74058 * 273.73973 * 13 12 11 15 15 N 1.47818 * 86.03475 * 222.08519 * 14 13 12 16 16 C 1.36940 * 134.45462 * 204.64487 * 15 14 13 17 17 H 1.07993 * 119.99859 * 179.87004 * 16 15 14 18 18 C 1.38817 * 119.99792 * 359.86561 * 16 15 14 19 19 N 1.31615 * 120.00237 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99596 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47336 * 90.00106 * 20 18 16 22 22 H 1.48498 * 109.46826 * 210.00152 * 20 18 16 23 23 H 1.48499 * 109.47294 * 329.99778 * 20 18 16 24 24 C 1.47572 * 91.05026 * 24.54961 * 15 14 13 25 25 C 1.47018 * 110.99928 * 170.00534 * 3 2 1 26 26 H 1.08997 * 109.47417 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46827 * 299.99679 * 1 2 3 28 28 H 1.09000 * 109.47509 * 59.99464 * 1 2 3 29 29 H 1.09002 * 109.46827 * 240.00321 * 2 1 3 30 30 H 1.08990 * 109.47480 * 120.00440 * 2 1 3 31 31 H 1.09006 * 109.46615 * 62.41273 * 4 3 2 32 32 H 1.08994 * 109.50962 * 302.30573 * 4 3 2 33 33 H 1.09007 * 109.50740 * 183.24618 * 5 4 3 34 34 H 1.08998 * 109.51019 * 63.10795 * 5 4 3 35 35 H 0.96991 * 120.00221 * 0.02562 * 11 9 7 36 36 H 1.09002 * 109.47205 * 299.99623 * 12 11 9 37 37 H 1.09002 * 109.47239 * 59.99994 * 12 11 9 38 38 H 1.08995 * 112.94438 * 45.33132 * 13 12 11 39 39 H 1.09000 * 113.77459 * 336.34834 * 14 13 12 40 40 H 1.08999 * 113.76978 * 107.74733 * 14 13 12 41 41 H 0.97000 * 119.99680 * 179.97438 * 19 18 16 42 42 H 1.09005 * 113.76814 * 221.14701 * 24 15 14 43 43 H 1.09004 * 113.87179 * 89.77295 * 24 15 14 44 44 H 1.09002 * 109.50864 * 57.67198 * 25 3 2 45 45 H 1.09003 * 109.50425 * 297.58837 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.3025 2.1983 0.9927 5 6 1.8018 3.6436 0.9185 6 8 3.2173 3.6647 1.1219 7 6 3.9472 2.8842 0.1715 8 1 3.7773 3.2776 -0.8307 9 6 5.4181 2.9457 0.4935 10 8 5.7969 3.5212 1.4916 11 7 6.3128 2.3611 -0.3277 12 6 7.7426 2.4205 -0.0144 13 6 8.5332 1.6855 -1.0987 14 6 8.6647 0.1718 -0.8514 15 7 10.0684 0.3263 -1.2882 16 6 11.0018 -0.5153 -1.8318 17 1 11.9879 -0.1457 -2.0710 18 6 10.6804 -1.8437 -2.0753 19 7 9.4785 -2.2940 -1.7842 20 14 11.9540 -2.9919 -2.8163 21 1 12.7307 -3.6381 -1.7279 22 1 11.2705 -4.0347 -3.6229 23 1 12.8732 -2.2160 -3.6870 24 6 10.0591 1.7516 -0.9056 25 6 3.4697 1.4311 0.2382 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8898 31 1 1.4874 1.8001 1.9905 32 1 0.2335 2.1713 0.7817 33 1 1.3141 4.2374 1.6917 34 1 1.5688 4.0593 -0.0618 35 1 6.0099 1.9012 -1.1261 36 1 8.0629 3.4616 0.0255 37 1 7.9230 1.9475 0.9509 38 1 8.2072 1.9387 -2.1075 39 1 8.5592 -0.1131 0.1954 40 1 8.0591 -0.4372 -1.5224 41 1 9.2538 -3.2221 -1.9548 42 1 10.5647 2.4015 -1.6198 43 1 10.3640 1.9337 0.1250 44 1 3.9826 0.8441 -0.5236 45 1 3.6899 1.0204 1.2236 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032201712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:45 Heat of formation + Delta-G solvation = -39.980772 kcal Electronic energy + Delta-G solvation = -24421.043767 eV Core-core repulsion = 20860.679331 eV Total energy + Delta-G solvation = -3560.364436 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.47319 -40.18086 -39.40895 -37.22368 -35.78360 -34.22306 -32.91321 -31.68193 -30.55373 -28.49733 -27.08674 -26.52211 -25.39083 -24.05233 -23.29171 -21.67088 -21.33055 -20.59044 -18.79316 -18.43135 -17.87335 -17.20598 -16.98580 -16.68653 -16.59120 -16.24818 -15.94172 -15.70749 -15.51527 -15.22149 -14.84580 -14.67242 -14.39274 -13.98515 -13.91826 -13.30323 -13.16150 -13.09590 -12.88046 -12.84133 -12.71059 -12.50815 -12.35804 -12.24173 -11.86279 -11.84048 -11.74399 -11.57438 -11.26638 -10.88359 -10.82251 -10.72071 -10.10639 -9.49269 -8.91019 -7.90350 -5.23176 1.46126 1.46873 1.47732 1.56299 1.79861 2.47855 2.66209 3.02443 3.30747 3.40222 3.61135 3.69149 3.79826 3.89960 3.97447 4.04971 4.09545 4.22549 4.30633 4.36562 4.44784 4.49643 4.58005 4.60247 4.65123 4.74737 4.78825 4.86230 4.88001 4.89551 4.99830 5.10002 5.10325 5.26355 5.28650 5.37093 5.55381 5.65909 5.81464 5.91484 5.94957 6.00925 6.50949 6.93255 7.15905 7.61409 8.57110 9.26501 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.018690 B = 0.003109 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.744986 B = 9004.108892 C =10343.473231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 N -0.535 5.535 4 C 0.010 3.990 5 C 0.058 3.942 6 O -0.388 6.388 7 C 0.086 3.914 8 H 0.117 0.883 9 C 0.518 3.482 10 O -0.571 6.571 11 N -0.707 5.707 12 C 0.142 3.858 13 C -0.113 4.113 14 C 0.166 3.834 15 N -0.645 5.645 16 C -0.236 4.236 17 H 0.083 0.917 18 C -0.067 4.067 19 N -0.952 5.952 20 Si 0.977 3.023 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.268 1.268 24 C 0.125 3.875 25 C 0.032 3.968 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.027 0.973 31 H 0.032 0.968 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.416 0.584 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.108 0.892 39 H 0.010 0.990 40 H 0.047 0.953 41 H 0.248 0.752 42 H 0.063 0.937 43 H 0.045 0.955 44 H 0.105 0.895 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.336 9.544 1.308 22.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.083 4.083 3 N -0.260 5.260 4 C -0.118 4.118 5 C -0.019 4.019 6 O -0.307 6.307 7 C 0.025 3.975 8 H 0.134 0.866 9 C 0.303 3.697 10 O -0.449 6.449 11 N -0.360 5.360 12 C 0.018 3.982 13 C -0.133 4.133 14 C 0.040 3.960 15 N -0.372 5.372 16 C -0.365 4.365 17 H 0.100 0.900 18 C -0.260 4.260 19 N -0.601 5.601 20 Si 0.806 3.194 21 H -0.217 1.217 22 H -0.219 1.219 23 H -0.192 1.192 24 C 0.000 4.000 25 C -0.097 4.097 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.093 0.907 35 H 0.252 0.748 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.126 0.874 39 H 0.028 0.972 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.124 0.876 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -19.928 9.970 1.575 22.339 hybrid contribution 0.843 -1.793 0.312 2.006 sum -19.086 8.177 1.887 20.849 Atomic orbital electron populations 1.21893 0.93118 1.02933 1.02809 1.22225 0.97263 0.87621 1.01165 1.62359 1.02317 1.12414 1.48924 1.23010 1.01102 0.94150 0.93558 1.23018 0.79104 0.95958 1.03784 1.88084 1.19753 1.69462 1.53404 1.21898 0.88001 0.92496 0.95097 0.86603 1.20533 0.88255 0.78122 0.82756 1.90692 1.81384 1.44499 1.28359 1.45829 1.06601 1.56013 1.27534 1.21225 0.78836 1.00640 0.97504 1.23403 0.95147 0.95491 0.99235 1.22280 0.85471 0.92699 0.95519 1.46409 1.11984 1.07524 1.71282 1.19438 0.93565 0.91031 1.32423 0.89960 1.25600 0.99058 0.98377 1.02931 1.69986 1.20601 1.14922 1.54589 0.85094 0.78096 0.78485 0.77755 1.21687 1.21870 1.19245 1.22694 0.93536 0.85588 0.98194 1.22621 0.90421 0.95265 1.01359 0.91090 0.91891 0.91275 0.89889 0.95420 0.94977 0.86433 0.86265 0.90673 0.74763 0.90477 0.92941 0.87398 0.97197 0.93454 0.94278 0.91887 0.93694 0.87638 0.95219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.18 71.98 0.66 -0.98 16 2 C 0.04 0.69 6.00 86.30 0.52 1.20 16 3 N -0.53 -9.27 4.88 -895.22 -4.36 -13.64 16 4 C 0.01 0.15 4.94 86.31 0.43 0.57 16 5 C 0.06 0.93 7.01 72.01 0.50 1.44 16 6 O -0.39 -9.96 10.01 -130.02 -1.30 -11.26 16 7 C 0.09 1.97 3.22 29.88 0.10 2.07 16 8 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 9 C 0.52 15.02 7.18 87.66 0.63 15.65 16 10 O -0.57 -21.93 16.51 15.95 0.26 -21.67 16 11 N -0.71 -18.11 5.52 -463.06 -2.56 -20.67 16 12 C 0.14 4.20 5.51 86.38 0.48 4.68 16 13 C -0.11 -3.79 3.93 -10.14 -0.04 -3.83 16 14 C 0.17 7.54 7.08 86.44 0.61 8.15 16 15 N -0.65 -32.67 3.70 -716.16 -2.65 -35.32 16 16 C -0.24 -13.22 10.70 84.03 0.90 -12.32 16 17 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 18 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 19 N -0.95 -56.70 11.39 21.65 0.25 -56.46 16 20 Si 0.98 45.47 29.55 68.60 2.03 47.50 16 21 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 22 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 24 C 0.13 4.81 8.51 86.49 0.74 5.55 16 25 C 0.03 0.67 4.86 86.31 0.42 1.09 16 26 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.62 6.28 -2.39 -0.01 0.60 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.03 0.48 8.08 -2.39 -0.02 0.46 16 31 H 0.03 0.57 8.14 -2.38 -0.02 0.56 16 32 H 0.12 1.22 6.06 -2.39 -0.01 1.21 16 33 H 0.12 1.47 8.14 -2.38 -0.02 1.46 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.42 8.58 8.34 -92.72 -0.77 7.80 16 36 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.05 1.76 7.88 -2.39 -0.02 1.74 16 38 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 39 H 0.01 0.49 7.92 -2.39 -0.02 0.47 16 40 H 0.05 2.38 7.16 -2.39 -0.02 2.36 16 41 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 42 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 43 H 0.05 1.67 8.10 -2.39 -0.02 1.65 16 44 H 0.11 1.95 8.01 -2.39 -0.02 1.93 16 45 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -74.20 360.02 -1.73 -75.94 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.20 Total: 15.64 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: 6.41 Total: 19.95 kcal Atomic # 7 Polarization: -116.76 SS G_CDS: -9.33 Total: -126.09 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -1.04 Total: -32.93 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -74.20 -1.73 -75.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032201712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.957 kcal (2) G-P(sol) polarization free energy of solvation -74.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds