Wall clock time and date at job start Tue Mar 31 2020 03:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.46805 * 2 1 4 4 C 1.47012 * 110.99957 * 293.63201 * 3 2 1 5 5 C 1.53098 * 109.25866 * 177.61072 * 4 3 2 6 6 O 1.43014 * 109.25881 * 56.85080 * 5 4 3 7 7 C 1.43019 * 113.73812 * 301.33035 * 6 5 4 8 8 H 1.09004 * 109.50589 * 298.73664 * 7 6 5 9 9 C 1.50702 * 109.50854 * 178.60457 * 7 6 5 10 10 O 1.21275 * 119.99803 * 355.21930 * 9 7 6 11 11 N 1.34773 * 119.99773 * 175.21548 * 9 7 6 12 12 C 1.46505 * 119.99509 * 180.02562 * 11 9 7 13 13 C 1.53003 * 109.46799 * 179.97438 * 12 11 9 14 14 C 1.53941 * 113.74188 * 271.67517 * 13 12 11 15 15 N 1.47585 * 86.11517 * 222.04586 * 14 13 12 16 16 C 1.36940 * 134.49227 * 204.63958 * 15 14 13 17 17 H 1.08003 * 119.99790 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00212 * 359.97438 * 16 15 14 19 19 N 1.31619 * 119.99800 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00181 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46807 * 60.00322 * 20 18 16 22 22 H 1.48498 * 109.47294 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47080 * 300.00753 * 20 18 16 24 24 C 1.47580 * 91.01494 * 24.64203 * 15 14 13 25 25 C 1.47016 * 110.99576 * 170.00040 * 3 2 1 26 26 H 1.09003 * 109.47440 * 299.99803 * 1 2 3 27 27 H 1.08997 * 109.47199 * 60.00312 * 1 2 3 28 28 H 1.09002 * 109.47041 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47509 * 239.99934 * 2 1 3 30 30 H 1.09004 * 109.46969 * 119.99401 * 2 1 3 31 31 H 1.09003 * 109.50911 * 297.54542 * 4 3 2 32 32 H 1.08999 * 109.50678 * 57.67219 * 4 3 2 33 33 H 1.08996 * 109.50683 * 176.78285 * 5 4 3 34 34 H 1.08998 * 109.50446 * 296.87270 * 5 4 3 35 35 H 0.96994 * 120.00434 * 359.97438 * 11 9 7 36 36 H 1.08991 * 109.47349 * 300.00015 * 12 11 9 37 37 H 1.09001 * 109.47175 * 60.00515 * 12 11 9 38 38 H 1.09000 * 112.94582 * 43.40965 * 13 12 11 39 39 H 1.09000 * 113.77472 * 336.34807 * 14 13 12 40 40 H 1.09002 * 113.77147 * 107.74963 * 14 13 12 41 41 H 0.97000 * 119.99850 * 179.97438 * 19 18 16 42 42 H 1.08997 * 113.76732 * 221.05241 * 24 15 14 43 43 H 1.09003 * 113.87315 * 89.67178 * 24 15 14 44 44 H 1.08999 * 109.50576 * 302.31900 * 25 3 2 45 45 H 1.09000 * 109.51010 * 62.45959 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6765 2.0651 -1.2574 5 6 2.1514 3.5190 -1.1910 6 8 3.5569 3.5446 -0.9278 7 6 3.9266 2.8915 0.2897 8 1 3.4488 3.3930 1.1313 9 6 5.4236 2.9447 0.4549 10 8 6.1147 3.4104 -0.4262 11 7 5.9943 2.4749 1.5818 12 6 7.4495 2.5272 1.7426 13 6 7.8342 1.9357 3.1002 14 6 7.8395 2.9643 4.2454 15 7 9.0865 2.3124 4.6907 16 6 9.7349 2.2004 5.8917 17 1 10.6635 1.6526 5.9549 18 6 9.1993 2.7919 7.0275 19 7 8.0678 3.4599 6.9503 20 14 10.0841 2.6397 8.6655 21 1 11.4385 3.2386 8.5540 22 1 9.3116 3.3535 9.7137 23 1 10.2057 1.2055 9.0311 24 6 9.3539 1.8298 3.3220 25 6 3.4696 1.4312 0.2383 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.1662 1.5599 -2.0899 32 1 0.5962 2.0413 -1.4010 33 1 1.9504 4.0114 -2.1424 34 1 1.6215 4.0389 -0.3930 35 1 5.4415 2.1029 2.2867 36 1 7.9238 1.9519 0.9476 37 1 7.7838 3.5634 1.6904 38 1 7.2918 1.0194 3.3335 39 1 7.9765 3.9929 3.9116 40 1 7.0102 2.8492 4.9433 41 1 7.6934 3.8729 7.7441 42 1 9.7337 0.8089 3.2825 43 1 9.9358 2.5237 2.7153 44 1 3.6982 0.9447 1.1866 45 1 3.9880 0.9159 -0.5703 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032201713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:48 Heat of formation + Delta-G solvation = -16.780187 kcal Electronic energy + Delta-G solvation = -24287.090583 eV Core-core repulsion = 20727.732200 eV Total energy + Delta-G solvation = -3559.358383 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.47930 -38.98304 -37.90007 -36.39231 -34.41879 -32.37986 -31.82980 -31.20879 -28.96209 -27.29571 -25.63252 -24.79791 -24.60503 -22.88871 -21.88410 -20.86934 -20.38751 -19.05256 -17.45469 -16.89882 -16.70315 -16.31442 -15.87711 -15.57388 -15.37330 -15.00574 -14.84523 -14.46625 -14.30150 -14.01546 -13.76378 -13.41871 -13.02682 -12.86687 -12.44876 -12.37192 -12.25303 -12.05485 -11.76251 -11.41931 -11.33226 -11.24001 -11.03225 -10.99613 -10.73135 -10.58872 -10.00863 -9.95589 -9.77575 -9.59930 -9.41806 -8.85546 -8.80813 -8.79759 -6.88590 -5.77450 -3.09708 2.61709 2.83974 3.36834 3.39282 3.43410 3.44621 3.90977 4.44906 4.45194 4.53323 4.57986 4.74867 4.77381 4.89545 4.95399 5.07227 5.11489 5.16565 5.21286 5.29232 5.32049 5.35965 5.41797 5.52555 5.54273 5.61517 5.64855 5.82465 5.83043 6.02947 6.23272 6.34560 6.50694 6.52463 6.55429 6.62585 6.72464 6.83532 7.21186 7.34539 7.54179 7.61010 7.97779 8.29882 9.04311 9.70283 10.59375 11.39611 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.022137 B = 0.002776 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.554102 B =10085.395504 C =10676.124054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 N -0.535 5.535 4 C 0.012 3.988 5 C 0.062 3.938 6 O -0.356 6.356 7 C 0.078 3.922 8 H 0.095 0.905 9 C 0.518 3.482 10 O -0.523 6.523 11 N -0.718 5.718 12 C 0.131 3.869 13 C -0.153 4.153 14 C 0.168 3.832 15 N -0.612 5.612 16 C -0.224 4.224 17 H 0.079 0.921 18 C -0.008 4.008 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.128 3.872 25 C 0.030 3.970 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.402 0.598 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.027 0.973 40 H 0.072 0.928 41 H 0.254 0.746 42 H 0.045 0.955 43 H 0.036 0.964 44 H 0.094 0.906 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.448 -5.737 -15.510 23.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 N -0.261 5.261 4 C -0.116 4.116 5 C -0.015 4.015 6 O -0.273 6.273 7 C 0.016 3.984 8 H 0.112 0.888 9 C 0.301 3.699 10 O -0.398 6.398 11 N -0.371 5.371 12 C 0.008 3.992 13 C -0.173 4.173 14 C 0.043 3.957 15 N -0.339 5.339 16 C -0.351 4.351 17 H 0.097 0.903 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.743 3.257 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.211 1.211 24 C 0.001 3.999 25 C -0.099 4.099 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.121 0.879 34 H 0.081 0.919 35 H 0.237 0.763 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.045 0.955 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.113 0.887 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.977 -5.003 -15.535 22.839 hybrid contribution 0.413 -0.678 0.781 1.114 sum -15.564 -5.680 -14.753 22.185 Atomic orbital electron populations 1.21798 0.94513 1.01776 1.02558 1.22121 0.96351 0.88102 1.01261 1.62256 1.12925 1.16662 1.34247 1.22891 1.01966 0.95913 0.90794 1.22743 0.81594 0.94992 1.02178 1.88131 1.23147 1.76647 1.39419 1.21963 0.93226 0.93345 0.89870 0.88766 1.19987 0.88820 0.78520 0.82525 1.90718 1.63966 1.44107 1.41055 1.45976 1.09149 1.63001 1.18938 1.21488 0.78352 1.01632 0.97767 1.23813 0.98677 1.01193 0.93592 1.22328 0.90950 0.92234 0.90181 1.45931 1.24965 1.61097 1.01860 1.18984 1.04104 1.28543 0.83517 0.90317 1.24782 0.97735 1.00059 0.97887 1.69800 1.19765 1.38968 1.28364 0.86197 0.78689 0.77555 0.83294 1.21191 1.21546 1.21096 1.22491 0.92378 0.97533 0.87456 1.22672 0.88344 0.96015 1.02867 0.91600 0.92717 0.92093 0.94653 0.90242 0.93740 0.89138 0.87926 0.91920 0.76326 0.91847 0.91225 0.89173 0.95483 0.90936 0.93602 0.93682 0.94628 0.88739 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.85 37.16 0.37 -0.52 16 2 C 0.05 0.35 5.68 -3.82 -0.02 0.33 16 3 N -0.54 -4.67 4.73 -234.30 -1.11 -5.78 16 4 C 0.01 0.10 5.44 -3.71 -0.02 0.08 16 5 C 0.06 0.56 7.01 37.21 0.26 0.82 16 6 O -0.36 -4.71 10.01 -55.06 -0.55 -5.26 16 7 C 0.08 0.92 3.22 -27.83 -0.09 0.83 16 8 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 9 C 0.52 7.64 7.18 -10.99 -0.08 7.56 16 10 O -0.52 -10.00 16.51 -14.27 -0.24 -10.24 16 11 N -0.72 -9.59 5.52 -60.29 -0.33 -9.92 16 12 C 0.13 2.02 5.53 -4.04 -0.02 1.99 16 13 C -0.15 -2.66 3.94 -89.69 -0.35 -3.02 16 14 C 0.17 3.82 7.07 -2.98 -0.02 3.80 16 15 N -0.61 -15.58 3.70 -177.92 -0.66 -16.24 16 16 C -0.22 -6.28 10.70 -15.06 -0.16 -6.44 16 17 H 0.08 2.13 7.83 -52.48 -0.41 1.71 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 19 N -0.92 -27.12 11.38 55.49 0.63 -26.48 16 20 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.13 2.55 8.50 -2.97 -0.03 2.53 16 25 C 0.03 0.29 4.88 -3.71 -0.02 0.27 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.30 6.52 -51.93 -0.34 -0.03 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.04 0.26 8.12 -51.93 -0.42 -0.16 16 30 H 0.08 0.55 8.04 -51.93 -0.42 0.13 16 31 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.56 6.38 -51.93 -0.33 0.23 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.40 4.46 8.34 -40.82 -0.34 4.12 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.18 7.83 -51.93 -0.41 0.78 16 38 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 39 H 0.03 0.65 7.89 -51.93 -0.41 0.24 16 40 H 0.07 1.80 7.15 -51.93 -0.37 1.43 16 41 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 44 H 0.09 0.79 7.95 -51.93 -0.41 0.37 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 361.10 15.07 5.44 5.44 Total: -1.00 -34.19 361.10 -9.76 -43.95 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -7.64 Total: -0.44 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -0.28 Total: 7.92 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -1.47 Total: -58.42 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.79 Total: -15.50 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.19 -9.76 -43.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032201713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.169 kcal (2) G-P(sol) polarization free energy of solvation -34.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds