Wall clock time and date at job start Tue Mar 31 2020 04:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34776 * 119.99390 * 2 1 4 4 O 1.21290 * 119.99606 * 185.16101 * 3 2 1 5 5 C 1.50692 * 120.00488 * 5.16646 * 3 2 1 6 6 H 1.09006 * 109.50836 * 34.04611 * 5 3 2 7 7 C 1.53100 * 109.50761 * 273.95958 * 5 3 2 8 8 O 1.43024 * 109.25508 * 183.26051 * 7 5 3 9 9 C 1.43014 * 113.77632 * 58.60475 * 8 7 5 10 10 C 1.53098 * 109.25548 * 301.35090 * 9 8 7 11 11 N 1.47012 * 109.25880 * 56.85094 * 10 9 8 12 12 C 1.46904 * 110.99967 * 177.60429 * 11 10 9 13 13 C 1.46494 * 120.00062 * 180.02562 * 2 1 3 14 14 H 1.09004 * 110.91519 * 179.88436 * 13 2 1 15 15 C 1.55155 * 111.00790 * 55.98811 * 13 2 1 16 16 C 1.54327 * 103.10235 * 277.51626 * 15 13 2 17 17 N 1.47019 * 107.26753 * 337.71480 * 16 15 13 18 18 C 1.36943 * 125.64881 * 178.97534 * 17 16 15 19 19 H 1.07994 * 119.99824 * 174.92924 * 18 17 16 20 20 C 1.38810 * 119.99812 * 354.92928 * 18 17 16 21 21 N 1.31626 * 119.99984 * 6.00341 * 20 18 17 22 22 Si 1.86792 * 120.00148 * 186.00550 * 20 18 17 23 23 H 1.48498 * 109.47655 * 94.99210 * 22 20 18 24 24 H 1.48505 * 109.47319 * 214.99510 * 22 20 18 25 25 H 1.48501 * 109.47331 * 334.99169 * 22 20 18 26 26 C 1.47427 * 108.70695 * 358.94463 * 17 16 15 27 27 H 1.09001 * 109.46605 * 214.71160 * 1 2 3 28 28 H 1.09000 * 109.47463 * 334.71136 * 1 2 3 29 29 H 1.08992 * 109.47322 * 94.71450 * 1 2 3 30 30 H 1.08998 * 109.50534 * 303.15621 * 7 5 3 31 31 H 1.09001 * 109.50429 * 63.27911 * 7 5 3 32 32 H 1.08994 * 109.50332 * 181.41646 * 9 8 7 33 33 H 1.08998 * 109.54069 * 61.30969 * 9 8 7 34 34 H 1.08992 * 109.50778 * 296.91288 * 10 9 8 35 35 H 1.09007 * 109.50220 * 176.78112 * 10 9 8 36 36 H 1.09001 * 109.46854 * 190.04418 * 12 11 10 37 37 H 1.09004 * 109.46873 * 310.04500 * 12 11 10 38 38 H 1.08997 * 109.46758 * 70.04556 * 12 11 10 39 39 H 1.08999 * 110.72578 * 159.05901 * 15 13 2 40 40 H 1.09010 * 110.71807 * 35.96581 * 15 13 2 41 41 H 1.09001 * 109.88117 * 97.12971 * 16 15 13 42 42 H 1.08993 * 109.88364 * 218.30022 * 16 15 13 43 43 H 0.96997 * 120.00173 * 180.02562 * 21 20 18 44 44 H 1.08999 * 110.36920 * 142.96450 * 26 17 16 45 45 H 1.09000 * 110.36441 * 265.18183 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3480 1.1694 -0.0945 5 6 1.3899 2.4696 0.1175 6 1 0.5181 2.3318 0.7571 7 6 0.9374 2.9264 -1.2720 8 8 0.2942 4.1992 -1.1638 9 6 1.1237 5.2183 -0.5993 10 6 1.5771 4.7842 0.7971 11 7 2.2707 3.4915 0.7017 12 6 2.7728 3.0653 2.0149 13 6 2.1975 -1.2687 -0.0006 14 1 3.2739 -1.0965 -0.0025 15 6 1.7740 -2.1549 -1.2016 16 6 0.4828 -2.8335 -0.6975 17 7 0.5169 -2.7992 0.7719 18 6 -0.4568 -3.2834 1.6043 19 1 -0.3016 -3.2850 2.6731 20 6 -1.6430 -3.7720 1.0743 21 7 -1.7860 -3.8802 -0.2297 22 14 -3.0364 -4.2761 2.2116 23 1 -3.9846 -3.1436 2.3650 24 1 -3.7493 -5.4437 1.6338 25 1 -2.4832 -4.6419 3.5403 26 6 1.7731 -2.1579 1.2009 27 1 -0.3632 -0.8448 0.5852 28 1 -0.3634 0.9292 0.4390 29 1 -0.3633 -0.0845 -1.0241 30 1 1.8043 3.0117 -1.9272 31 1 0.2388 2.1986 -1.6847 32 1 0.5594 6.1479 -0.5261 33 1 1.9964 5.3713 -1.2342 34 1 0.7080 4.6839 1.4472 35 1 2.2556 5.5318 1.2082 36 1 3.4301 2.2047 1.8906 37 1 3.3279 3.8831 2.4745 38 1 1.9331 2.7919 2.6537 39 1 2.5400 -2.8986 -1.4213 40 1 1.5701 -1.5424 -2.0799 41 1 -0.3885 -2.2887 -1.0609 42 1 0.4476 -3.8665 -1.0434 43 1 -2.6150 -4.2213 -0.6000 44 1 1.6029 -1.5439 2.0853 45 1 2.5338 -2.9118 1.4039 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033018001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:05 Heat of formation + Delta-G solvation = -21.090318 kcal Electronic energy + Delta-G solvation = -26148.171954 eV Core-core repulsion = 22588.626670 eV Total energy + Delta-G solvation = -3559.545284 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.60576 -38.97772 -37.38691 -35.61623 -34.31616 -32.43957 -31.31215 -29.38592 -28.86867 -27.83735 -26.03513 -25.02387 -24.31035 -24.12201 -21.70925 -20.11514 -20.05829 -18.57083 -17.30420 -16.96721 -16.61319 -16.49187 -15.75469 -15.26991 -15.13816 -14.68993 -14.55667 -14.20991 -13.93355 -13.74588 -13.46655 -13.15856 -12.67430 -12.41477 -12.26150 -12.06566 -11.97960 -11.76244 -11.70326 -11.58909 -11.34158 -10.98751 -10.95677 -10.84150 -10.75316 -10.28912 -10.17153 -9.98375 -9.95264 -9.73019 -9.29893 -8.72081 -8.48221 -8.20873 -6.87281 -5.80738 -3.14510 2.74113 3.12527 3.34107 3.40651 3.42145 3.58319 3.83965 4.42557 4.62539 4.66565 4.78306 4.87508 4.99431 5.04018 5.33528 5.36835 5.39029 5.39213 5.42059 5.47868 5.48972 5.60630 5.64819 5.67781 5.80319 5.85116 5.95216 6.07092 6.18565 6.30878 6.47848 6.50768 6.58598 6.64049 6.75113 6.78498 6.89776 7.06286 7.48794 7.55243 7.74736 7.78367 8.16073 8.44076 9.13116 9.72586 10.38527 11.30335 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.020017 B = 0.004371 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.502498 B = 6404.612291 C = 6787.383430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.586 5.586 3 C 0.517 3.483 4 O -0.533 6.533 5 C 0.030 3.970 6 H 0.075 0.925 7 C 0.078 3.922 8 O -0.379 6.379 9 C 0.060 3.940 10 C 0.018 3.982 11 N -0.519 5.519 12 C 0.020 3.980 13 C 0.124 3.876 14 H 0.100 0.900 15 C -0.155 4.155 16 C 0.173 3.827 17 N -0.603 5.603 18 C -0.233 4.233 19 H 0.077 0.923 20 C -0.003 4.003 21 N -0.917 5.917 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.126 3.874 27 H 0.121 0.879 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.025 0.975 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.040 0.960 43 H 0.253 0.747 44 H 0.042 0.958 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.451 15.184 -0.256 16.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.318 5.318 3 C 0.304 3.696 4 O -0.410 6.410 5 C -0.082 4.082 6 H 0.092 0.908 7 C 0.000 4.000 8 O -0.297 6.297 9 C -0.017 4.017 10 C -0.110 4.110 11 N -0.245 5.245 12 C -0.127 4.127 13 C 0.019 3.981 14 H 0.118 0.882 15 C -0.194 4.194 16 C 0.048 3.952 17 N -0.330 5.330 18 C -0.361 4.361 19 H 0.095 0.905 20 C -0.200 4.200 21 N -0.564 5.564 22 Si 0.739 3.261 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.001 4.001 27 H 0.140 0.860 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.124 0.876 32 H 0.117 0.883 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.044 0.956 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 6.081 15.148 -0.696 16.338 hybrid contribution -1.319 -0.553 1.270 1.912 sum 4.762 14.596 0.574 15.364 Atomic orbital electron populations 1.22336 0.78477 1.04661 1.03026 1.47732 1.07695 1.05057 1.71301 1.20066 0.87830 0.84551 0.77193 1.90651 1.13819 1.86981 1.49546 1.22390 0.95058 0.91389 0.99325 0.90778 1.22545 0.98466 0.85529 0.93456 1.88018 1.39950 1.18813 1.82901 1.22711 0.95220 0.91005 0.92721 1.22855 0.97929 0.92035 0.98217 1.61953 1.36164 1.01663 1.24730 1.22497 0.99703 1.02432 0.88105 1.22336 0.96112 0.82330 0.97282 0.88233 1.23233 1.00773 0.98464 0.96945 1.21265 0.92080 0.98516 0.83300 1.44589 1.17463 1.68903 1.02026 1.19035 0.93112 1.34796 0.89170 0.90478 1.24791 0.97969 1.01272 0.95950 1.69975 1.25928 1.51192 1.09324 0.86152 0.82456 0.77805 0.79675 1.21577 1.21739 1.20687 1.21977 0.89957 0.93507 0.94665 0.86048 0.92590 0.92754 0.91497 0.87621 0.88257 0.92023 0.93817 0.89231 0.89761 0.91194 0.95622 0.91396 0.91896 0.92796 0.94201 0.93660 0.93951 0.95162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.97 8.04 59.85 0.48 1.45 16 2 N -0.59 -9.97 2.91 -171.19 -0.50 -10.47 16 3 C 0.52 8.57 5.99 -10.99 -0.07 8.51 16 4 O -0.53 -10.19 14.59 5.55 0.08 -10.11 16 5 C 0.03 0.42 1.60 -68.76 -0.11 0.31 16 6 H 0.07 1.04 6.16 -51.93 -0.32 0.72 16 7 C 0.08 1.01 6.24 37.21 0.23 1.24 16 8 O -0.38 -4.78 10.82 -35.23 -0.38 -5.16 16 9 C 0.06 0.60 7.01 37.21 0.26 0.86 16 10 C 0.02 0.18 5.64 -3.71 -0.02 0.16 16 11 N -0.52 -6.84 4.53 -235.97 -1.07 -7.91 16 12 C 0.02 0.26 9.12 60.07 0.55 0.80 16 13 C 0.12 2.23 3.69 -65.53 -0.24 1.99 16 14 H 0.10 1.79 7.02 -51.93 -0.36 1.42 16 15 C -0.15 -2.84 6.41 -24.90 -0.16 -3.00 16 16 C 0.17 3.91 4.32 -3.06 -0.01 3.90 16 17 N -0.60 -14.22 1.91 -169.77 -0.32 -14.55 16 18 C -0.23 -6.08 9.87 -15.06 -0.15 -6.22 16 19 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 20 C 0.00 -0.08 5.48 -17.43 -0.10 -0.17 16 21 N -0.92 -25.33 10.35 55.49 0.57 -24.75 16 22 Si 0.91 21.12 29.56 -169.99 -5.02 16.10 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 26 C 0.13 2.52 6.50 -2.27 -0.01 2.51 16 27 H 0.12 2.52 4.99 -51.93 -0.26 2.26 16 28 H 0.06 0.82 5.64 -51.93 -0.29 0.53 16 29 H 0.05 0.89 7.78 -51.93 -0.40 0.49 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.11 1.30 7.65 -51.93 -0.40 0.90 16 32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 36 H 0.08 1.25 6.33 -51.93 -0.33 0.92 16 37 H 0.07 0.72 8.04 -51.93 -0.42 0.30 16 38 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 41 H 0.05 1.31 6.03 -51.93 -0.31 1.00 16 42 H 0.04 1.02 7.63 -51.93 -0.40 0.62 16 43 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 340.67 15.07 5.13 5.13 Total: -1.00 -29.62 340.67 -8.12 -37.74 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.26 Total: 1.65 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: 0.65 Total: 12.33 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -1.32 Total: -57.67 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.30 Total: -15.27 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.62 -8.12 -37.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033018001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.647 kcal (2) G-P(sol) polarization free energy of solvation -29.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds