Wall clock time and date at job start Tue Mar 31 2020 04:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34776 * 119.99390 * 2 1 4 4 O 1.21290 * 119.99606 * 185.16101 * 3 2 1 5 5 C 1.50692 * 120.00488 * 5.16646 * 3 2 1 6 6 H 1.09006 * 109.50836 * 34.04611 * 5 3 2 7 7 C 1.53100 * 109.50761 * 273.95958 * 5 3 2 8 8 O 1.43024 * 109.25508 * 183.26051 * 7 5 3 9 9 C 1.43014 * 113.77632 * 58.60475 * 8 7 5 10 10 C 1.53098 * 109.25548 * 301.35090 * 9 8 7 11 11 N 1.47012 * 109.25880 * 56.85094 * 10 9 8 12 12 C 1.46904 * 110.99967 * 177.60429 * 11 10 9 13 13 C 1.46494 * 120.00062 * 180.02562 * 2 1 3 14 14 H 1.09004 * 110.91519 * 179.88436 * 13 2 1 15 15 C 1.55155 * 111.00790 * 55.98811 * 13 2 1 16 16 C 1.54327 * 103.10235 * 277.51626 * 15 13 2 17 17 N 1.47019 * 107.26753 * 337.71480 * 16 15 13 18 18 C 1.36943 * 125.64881 * 178.97534 * 17 16 15 19 19 H 1.07994 * 119.99824 * 174.92924 * 18 17 16 20 20 C 1.38810 * 119.99812 * 354.92928 * 18 17 16 21 21 N 1.31626 * 119.99984 * 6.00341 * 20 18 17 22 22 Si 1.86792 * 120.00148 * 186.00550 * 20 18 17 23 23 H 1.48498 * 109.47655 * 94.99210 * 22 20 18 24 24 H 1.48505 * 109.47319 * 214.99510 * 22 20 18 25 25 H 1.48501 * 109.47331 * 334.99169 * 22 20 18 26 26 C 1.47427 * 108.70695 * 358.94463 * 17 16 15 27 27 H 1.09001 * 109.46605 * 214.71160 * 1 2 3 28 28 H 1.09000 * 109.47463 * 334.71136 * 1 2 3 29 29 H 1.08992 * 109.47322 * 94.71450 * 1 2 3 30 30 H 1.08998 * 109.50534 * 303.15621 * 7 5 3 31 31 H 1.09001 * 109.50429 * 63.27911 * 7 5 3 32 32 H 1.08994 * 109.50332 * 181.41646 * 9 8 7 33 33 H 1.08998 * 109.54069 * 61.30969 * 9 8 7 34 34 H 1.08992 * 109.50778 * 296.91288 * 10 9 8 35 35 H 1.09007 * 109.50220 * 176.78112 * 10 9 8 36 36 H 1.09001 * 109.46854 * 190.04418 * 12 11 10 37 37 H 1.09004 * 109.46873 * 310.04500 * 12 11 10 38 38 H 1.08997 * 109.46758 * 70.04556 * 12 11 10 39 39 H 1.08999 * 110.72578 * 159.05901 * 15 13 2 40 40 H 1.09010 * 110.71807 * 35.96581 * 15 13 2 41 41 H 1.09001 * 109.88117 * 97.12971 * 16 15 13 42 42 H 1.08993 * 109.88364 * 218.30022 * 16 15 13 43 43 H 0.96997 * 120.00173 * 180.02562 * 21 20 18 44 44 H 1.08999 * 110.36920 * 142.96450 * 26 17 16 45 45 H 1.09000 * 110.36441 * 265.18183 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3480 1.1694 -0.0945 5 6 1.3899 2.4696 0.1175 6 1 0.5181 2.3318 0.7571 7 6 0.9374 2.9264 -1.2720 8 8 0.2942 4.1992 -1.1638 9 6 1.1237 5.2183 -0.5993 10 6 1.5771 4.7842 0.7971 11 7 2.2707 3.4915 0.7017 12 6 2.7728 3.0653 2.0149 13 6 2.1975 -1.2687 -0.0006 14 1 3.2739 -1.0965 -0.0025 15 6 1.7740 -2.1549 -1.2016 16 6 0.4828 -2.8335 -0.6975 17 7 0.5169 -2.7992 0.7719 18 6 -0.4568 -3.2834 1.6043 19 1 -0.3016 -3.2850 2.6731 20 6 -1.6430 -3.7720 1.0743 21 7 -1.7860 -3.8802 -0.2297 22 14 -3.0364 -4.2761 2.2116 23 1 -3.9846 -3.1436 2.3650 24 1 -3.7493 -5.4437 1.6338 25 1 -2.4832 -4.6419 3.5403 26 6 1.7731 -2.1579 1.2009 27 1 -0.3632 -0.8448 0.5852 28 1 -0.3634 0.9292 0.4390 29 1 -0.3633 -0.0845 -1.0241 30 1 1.8043 3.0117 -1.9272 31 1 0.2388 2.1986 -1.6847 32 1 0.5594 6.1479 -0.5261 33 1 1.9964 5.3713 -1.2342 34 1 0.7080 4.6839 1.4472 35 1 2.2556 5.5318 1.2082 36 1 3.4301 2.2047 1.8906 37 1 3.3279 3.8831 2.4745 38 1 1.9331 2.7919 2.6537 39 1 2.5400 -2.8986 -1.4213 40 1 1.5701 -1.5424 -2.0799 41 1 -0.3885 -2.2887 -1.0609 42 1 0.4476 -3.8665 -1.0434 43 1 -2.6150 -4.2213 -0.6000 44 1 1.6029 -1.5439 2.0853 45 1 2.5338 -2.9118 1.4039 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033018001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:04 Heat of formation + Delta-G solvation = -41.052362 kcal Electronic energy + Delta-G solvation = -26149.037573 eV Core-core repulsion = 22588.626670 eV Total energy + Delta-G solvation = -3560.410904 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.81699 -40.20279 -38.86251 -36.62882 -35.87743 -34.15825 -32.46809 -31.08147 -29.92790 -29.38753 -27.51775 -26.50519 -25.55139 -25.26399 -22.87491 -21.93929 -21.26876 -19.92603 -18.92140 -18.54061 -17.63552 -17.59282 -16.95145 -16.67102 -16.27951 -16.23590 -15.73936 -15.72389 -15.36383 -14.92913 -14.81944 -14.45163 -14.03433 -13.78038 -13.52119 -13.46155 -13.37266 -13.27701 -13.01253 -12.82215 -12.78061 -12.68038 -12.38237 -12.20054 -12.01303 -11.96696 -11.83470 -11.70388 -11.54031 -11.00053 -10.68224 -10.56482 -9.70606 -9.46742 -8.78803 -7.83074 -5.17480 1.43947 1.48895 1.49954 1.58031 1.84554 2.50868 2.64565 2.86080 3.36372 3.43408 3.64703 3.68976 3.79172 3.89400 3.92165 3.99875 4.16426 4.23353 4.30064 4.34612 4.45233 4.49001 4.57836 4.61664 4.63241 4.68659 4.70201 4.81794 4.87841 4.91582 4.93954 4.98722 5.04435 5.23097 5.49503 5.53277 5.67837 5.71493 5.81674 5.88050 6.01638 6.20849 6.42355 7.09892 7.12815 7.77810 8.42844 9.26707 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.020017 B = 0.004371 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.502498 B = 6404.612291 C = 6787.383430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.588 5.588 3 C 0.521 3.479 4 O -0.558 6.558 5 C 0.036 3.964 6 H 0.076 0.924 7 C 0.083 3.917 8 O -0.390 6.390 9 C 0.055 3.945 10 C 0.018 3.982 11 N -0.534 5.534 12 C 0.024 3.976 13 C 0.134 3.866 14 H 0.108 0.892 15 C -0.141 4.141 16 C 0.185 3.815 17 N -0.615 5.615 18 C -0.240 4.240 19 H 0.078 0.922 20 C -0.051 4.051 21 N -0.943 5.943 22 Si 0.969 3.031 23 H -0.286 1.286 24 H -0.298 1.298 25 H -0.273 1.273 26 C 0.127 3.873 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.128 0.872 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.113 0.887 36 H 0.057 0.943 37 H 0.093 0.907 38 H 0.026 0.974 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.033 0.967 42 H 0.002 0.998 43 H 0.247 0.753 44 H 0.041 0.959 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.717 17.186 0.292 18.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.319 5.319 3 C 0.309 3.691 4 O -0.436 6.436 5 C -0.075 4.075 6 H 0.093 0.907 7 C 0.005 3.995 8 O -0.308 6.308 9 C -0.021 4.021 10 C -0.109 4.109 11 N -0.260 5.260 12 C -0.124 4.124 13 C 0.029 3.971 14 H 0.125 0.875 15 C -0.180 4.180 16 C 0.061 3.939 17 N -0.342 5.342 18 C -0.369 4.369 19 H 0.095 0.905 20 C -0.245 4.245 21 N -0.591 5.591 22 Si 0.798 3.202 23 H -0.213 1.213 24 H -0.225 1.225 25 H -0.198 1.198 26 C 0.001 3.999 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.127 0.873 32 H 0.146 0.854 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.131 0.869 36 H 0.076 0.924 37 H 0.111 0.889 38 H 0.045 0.955 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.021 0.979 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.365 17.177 -0.130 18.319 hybrid contribution -1.339 -1.120 1.135 2.083 sum 5.025 16.057 1.006 16.855 Atomic orbital electron populations 1.22143 0.78305 1.04220 1.02650 1.47755 1.07686 1.05031 1.71458 1.20483 0.87566 0.85051 0.76009 1.90638 1.15005 1.87358 1.50591 1.22325 0.94714 0.90332 1.00177 0.90700 1.22466 0.98333 0.86168 0.92558 1.88010 1.40680 1.18902 1.83186 1.22970 0.95580 0.91251 0.92330 1.22976 0.98367 0.90924 0.98626 1.61977 1.36602 1.02453 1.25007 1.22444 0.99471 1.02357 0.88117 1.22173 0.96515 0.82527 0.95845 0.87451 1.23101 0.98839 0.98669 0.97350 1.20990 0.93560 0.96381 0.82989 1.44732 1.18175 1.68934 1.02324 1.19306 0.93832 1.34108 0.89614 0.90455 1.25460 0.99965 1.01968 0.97143 1.70158 1.25966 1.52274 1.10693 0.85211 0.79732 0.77014 0.78258 1.21251 1.22510 1.19848 1.22055 0.88654 0.93752 0.95483 0.89632 0.90302 0.92545 0.92095 0.87287 0.85409 0.91889 0.93598 0.86881 0.92427 0.88872 0.95519 0.89910 0.90585 0.94914 0.97926 0.94343 0.94111 0.94539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.31 8.04 127.77 1.03 3.34 16 2 N -0.59 -19.47 2.91 -813.91 -2.37 -21.84 16 3 C 0.52 16.67 5.99 87.65 0.52 17.19 16 4 O -0.56 -20.75 14.59 -3.06 -0.04 -20.80 16 5 C 0.04 0.96 1.60 44.18 0.07 1.03 16 6 H 0.08 1.96 6.16 -2.38 -0.01 1.94 16 7 C 0.08 2.00 6.24 72.02 0.45 2.45 16 8 O -0.39 -8.93 10.82 -148.98 -1.61 -10.54 16 9 C 0.06 0.92 7.01 72.01 0.50 1.43 16 10 C 0.02 0.32 5.64 86.31 0.49 0.81 16 11 N -0.53 -12.95 4.53 -900.48 -4.08 -17.03 16 12 C 0.02 0.56 9.12 127.69 1.16 1.72 16 13 C 0.13 4.72 3.69 46.55 0.17 4.89 16 14 H 0.11 3.70 7.02 -2.39 -0.02 3.68 16 15 C -0.14 -5.06 6.41 31.78 0.20 -4.85 16 16 C 0.19 8.55 4.32 86.73 0.37 8.93 16 17 N -0.61 -29.34 1.91 -691.04 -1.32 -30.67 16 18 C -0.24 -12.63 9.87 84.03 0.83 -11.80 16 19 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 20 C -0.05 -2.75 5.48 84.86 0.47 -2.29 16 21 N -0.94 -53.30 10.35 21.65 0.22 -53.08 16 22 Si 0.97 43.77 29.56 68.60 2.03 45.80 16 23 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 C 0.13 5.04 6.50 87.02 0.57 5.60 16 27 H 0.09 3.57 4.99 -2.39 -0.01 3.56 16 28 H 0.08 2.22 5.64 -2.39 -0.01 2.20 16 29 H 0.06 1.84 7.78 -2.39 -0.02 1.82 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.11 2.52 7.65 -2.39 -0.02 2.50 16 32 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.11 1.44 8.09 -2.38 -0.02 1.42 16 36 H 0.06 1.66 6.33 -2.39 -0.02 1.64 16 37 H 0.09 1.69 8.04 -2.38 -0.02 1.67 16 38 H 0.03 0.60 8.12 -2.39 -0.02 0.58 16 39 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 40 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 41 H 0.03 1.64 6.03 -2.39 -0.01 1.62 16 42 H 0.00 0.13 7.63 -2.39 -0.02 0.11 16 43 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 44 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -63.84 340.67 0.64 -63.21 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.97 Total: 16.49 kcal Atomic # 6 Polarization: 21.61 SS G_CDS: 6.84 Total: 28.45 kcal Atomic # 7 Polarization: -115.06 SS G_CDS: -7.54 Total: -122.61 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -1.66 Total: -31.34 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -63.84 0.64 -63.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033018001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.153 kcal (2) G-P(sol) polarization free energy of solvation -63.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds