Wall clock time and date at job start Tue Mar 31 2020 04:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34771 * 120.00090 * 2 1 4 4 O 1.21287 * 119.99835 * 179.97438 * 3 2 1 5 5 C 1.50694 * 120.00205 * 359.97438 * 3 2 1 6 6 H 1.08996 * 109.50624 * 326.30394 * 5 3 2 7 7 C 1.53094 * 109.50836 * 86.43851 * 5 3 2 8 8 O 1.43014 * 109.26034 * 176.78326 * 7 5 3 9 9 C 1.43011 * 113.74006 * 301.32778 * 8 7 5 10 10 C 1.53099 * 109.25673 * 58.67168 * 9 8 7 11 11 N 1.47015 * 109.50603 * 206.22084 * 5 3 2 12 12 C 1.46894 * 111.00105 * 57.67057 * 11 5 3 13 13 C 1.46509 * 119.99627 * 179.97438 * 2 1 3 14 14 H 1.09003 * 110.88360 * 176.12444 * 13 2 1 15 15 C 1.55160 * 111.00466 * 300.00120 * 13 2 1 16 16 C 1.54326 * 102.93719 * 82.61137 * 15 13 2 17 17 N 1.47022 * 107.27564 * 22.19350 * 16 15 13 18 18 C 1.36929 * 125.64796 * 181.01774 * 17 16 15 19 19 H 1.08006 * 119.99959 * 180.02562 * 18 17 16 20 20 C 1.38816 * 120.00113 * 0.03053 * 18 17 16 21 21 N 1.31614 * 120.00031 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99950 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46851 * 269.99784 * 22 20 18 24 24 H 1.48503 * 109.47405 * 29.99135 * 22 20 18 25 25 H 1.48492 * 109.47342 * 149.99712 * 22 20 18 26 26 C 1.47428 * 108.70103 * 1.28385 * 17 16 15 27 27 H 1.09000 * 109.47240 * 270.00285 * 1 2 3 28 28 H 1.09002 * 109.46530 * 30.00289 * 1 2 3 29 29 H 1.09002 * 109.47074 * 150.00125 * 1 2 3 30 30 H 1.08999 * 109.50834 * 296.71740 * 7 5 3 31 31 H 1.09004 * 109.50977 * 56.84770 * 7 5 3 32 32 H 1.08993 * 109.50882 * 298.73364 * 9 8 7 33 33 H 1.09002 * 109.50658 * 178.60205 * 9 8 7 34 34 H 1.09003 * 109.50970 * 183.21775 * 10 9 8 35 35 H 1.09004 * 109.54780 * 63.10584 * 10 9 8 36 36 H 1.09003 * 109.47104 * 53.97520 * 12 11 5 37 37 H 1.09000 * 109.47399 * 173.96990 * 12 11 5 38 38 H 1.09001 * 109.47692 * 293.97443 * 12 11 5 39 39 H 1.08996 * 110.71726 * 324.25262 * 15 13 2 40 40 H 1.08993 * 110.86851 * 201.04322 * 15 13 2 41 41 H 1.09002 * 109.88110 * 262.77092 * 16 15 13 42 42 H 1.09007 * 109.87919 * 141.61004 * 16 15 13 43 43 H 0.96995 * 120.00014 * 180.02562 * 21 20 18 44 44 H 1.09004 * 110.36416 * 94.48176 * 26 17 16 45 45 H 1.08998 * 110.36486 * 216.80535 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4722 -0.0006 6 1 0.4635 2.3599 -0.5709 7 6 1.0517 2.8705 1.4395 8 8 0.4035 4.1453 1.4382 9 6 1.1854 5.1882 0.8498 10 6 1.5205 4.8134 -0.5963 11 7 2.2170 3.5188 -0.6128 12 6 2.6076 3.1484 -1.9795 13 6 2.1975 -1.2688 0.0006 14 1 3.2717 -1.0974 -0.0683 15 6 1.8483 -2.1121 1.2554 16 6 0.5315 -2.8069 0.8492 17 7 0.4803 -2.8208 -0.6200 18 6 -0.5388 -3.3321 -1.3782 19 1 -0.4814 -3.2945 -2.4561 20 6 -1.6459 -3.8988 -0.7616 21 7 -1.7158 -3.9450 0.5519 22 14 -3.0365 -4.5957 -1.7959 23 1 -4.0384 -3.5318 -2.0597 24 1 -2.4930 -5.0942 -3.0849 25 1 -3.6837 -5.7150 -1.0657 26 6 1.7109 -2.1987 -1.1418 27 1 -0.3634 0.0001 1.0277 28 1 -0.3632 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 0.3884 2.1254 1.8788 31 1 1.9705 2.9300 2.0230 32 1 2.1080 5.3151 1.4160 33 1 0.6188 6.1193 0.8625 34 1 2.1641 5.5784 -1.0308 35 1 0.6006 4.7393 -1.1764 36 1 1.7166 2.9074 -2.5594 37 1 3.1303 3.9830 -2.4468 38 1 3.2657 2.2801 -1.9468 39 1 1.6936 -1.4687 2.1215 40 1 2.6263 -2.8481 1.4574 41 1 -0.3184 -2.2506 1.2446 42 1 0.5184 -3.8281 1.2303 43 1 -2.4891 -4.3413 0.9828 44 1 2.4591 -2.9613 -1.3581 45 1 1.4915 -1.6166 -2.0369 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033018002.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:01:07 Heat of formation + Delta-G solvation = -20.918167 kcal Electronic energy + Delta-G solvation = -26122.940046 eV Core-core repulsion = 22563.402227 eV Total energy + Delta-G solvation = -3559.537819 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.60125 -38.98668 -37.39743 -35.61842 -34.30966 -32.43358 -31.31190 -29.40023 -28.87925 -27.80345 -26.05587 -25.02551 -24.31289 -24.11750 -21.71383 -20.11210 -20.04691 -18.56286 -17.30120 -16.97385 -16.61670 -16.49223 -15.75206 -15.29546 -15.12112 -14.68387 -14.54206 -14.20883 -13.94523 -13.75342 -13.47663 -13.14367 -12.69135 -12.42039 -12.22616 -12.12271 -11.98652 -11.76004 -11.69928 -11.55911 -11.32834 -10.99026 -10.94182 -10.84284 -10.75792 -10.30013 -10.18171 -9.98545 -9.93722 -9.70696 -9.29946 -8.74573 -8.48258 -8.21416 -6.87812 -5.80028 -3.14699 2.74835 3.12158 3.34216 3.40679 3.42003 3.58867 3.84266 4.42482 4.62907 4.66400 4.78617 4.87331 4.99505 5.03919 5.33410 5.36934 5.38806 5.40501 5.41364 5.47915 5.49375 5.60816 5.65344 5.67888 5.80572 5.85898 5.94480 6.07459 6.18882 6.31131 6.47244 6.50935 6.58870 6.64037 6.75805 6.78370 6.89965 7.06763 7.48858 7.54870 7.74796 7.78449 8.15819 8.44517 9.13076 9.72468 10.37812 11.30769 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.021012 B = 0.004250 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.278623 B = 6586.033265 C = 6903.320279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.585 5.585 3 C 0.517 3.483 4 O -0.534 6.534 5 C 0.030 3.970 6 H 0.075 0.925 7 C 0.078 3.922 8 O -0.379 6.379 9 C 0.060 3.940 10 C 0.018 3.982 11 N -0.520 5.520 12 C 0.021 3.979 13 C 0.123 3.877 14 H 0.099 0.901 15 C -0.155 4.155 16 C 0.174 3.826 17 N -0.603 5.603 18 C -0.234 4.234 19 H 0.078 0.922 20 C -0.003 4.003 21 N -0.918 5.918 22 Si 0.910 3.090 23 H -0.288 1.288 24 H -0.282 1.282 25 H -0.290 1.290 26 C 0.126 3.874 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.126 0.874 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.043 0.957 36 H 0.025 0.975 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.051 0.949 42 H 0.042 0.958 43 H 0.253 0.747 44 H 0.032 0.968 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.341 15.303 -0.154 16.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.317 5.317 3 C 0.303 3.697 4 O -0.410 6.410 5 C -0.082 4.082 6 H 0.092 0.908 7 C 0.001 3.999 8 O -0.297 6.297 9 C -0.017 4.017 10 C -0.110 4.110 11 N -0.245 5.245 12 C -0.127 4.127 13 C 0.019 3.981 14 H 0.117 0.883 15 C -0.195 4.195 16 C 0.050 3.950 17 N -0.330 5.330 18 C -0.362 4.362 19 H 0.095 0.905 20 C -0.200 4.200 21 N -0.565 5.565 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.207 1.207 25 H -0.217 1.217 26 C -0.001 4.001 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.144 0.856 30 H 0.124 0.876 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.062 0.938 36 H 0.043 0.957 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.049 0.951 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.006 15.244 0.239 16.386 hybrid contribution -1.372 -0.607 -1.171 1.903 sum 4.634 14.637 -0.932 15.381 Atomic orbital electron populations 1.22360 0.78454 1.05391 1.02413 1.47744 1.07711 1.05044 1.71209 1.20069 0.87892 0.84603 0.77118 1.90651 1.13496 1.87060 1.49831 1.22401 0.95616 0.91159 0.98998 0.90790 1.22521 0.98777 0.85656 0.92961 1.88020 1.43437 1.17406 1.80797 1.22712 0.96266 0.90708 0.91980 1.22857 0.97880 0.92068 0.98225 1.61956 1.40740 1.01293 1.20540 1.22492 1.00138 1.02820 0.87274 1.22281 0.96150 0.82406 0.97248 0.88287 1.23245 1.00906 0.98679 0.96626 1.21238 0.91604 0.98487 0.83695 1.44610 1.17117 1.69366 1.01884 1.19027 0.95208 1.32200 0.89762 0.90465 1.24782 0.98489 1.00938 0.95805 1.69959 1.30038 1.49673 1.06863 0.86153 0.82186 0.78515 0.79092 1.21566 1.20739 1.21661 1.21930 0.90138 0.93451 0.94602 0.92901 0.92851 0.85608 0.87631 0.91496 0.92017 0.88256 0.89246 0.93829 0.95661 0.91185 0.89787 0.91930 0.91376 0.93066 0.93960 0.93647 0.95053 0.93894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.95 8.37 59.85 0.50 1.45 16 2 N -0.59 -9.95 2.91 -171.34 -0.50 -10.45 16 3 C 0.52 8.56 5.98 -10.99 -0.07 8.50 16 4 O -0.53 -10.21 14.61 5.55 0.08 -10.13 16 5 C 0.03 0.42 1.71 -68.76 -0.12 0.30 16 6 H 0.07 1.03 6.00 -51.93 -0.31 0.72 16 7 C 0.08 1.02 6.27 37.21 0.23 1.26 16 8 O -0.38 -4.79 10.83 -35.23 -0.38 -5.17 16 9 C 0.06 0.60 7.01 37.21 0.26 0.86 16 10 C 0.02 0.18 5.65 -3.71 -0.02 0.16 16 11 N -0.52 -6.83 4.53 -235.97 -1.07 -7.89 16 12 C 0.02 0.26 9.12 60.06 0.55 0.80 16 13 C 0.12 2.23 3.66 -65.66 -0.24 1.99 16 14 H 0.10 1.78 7.02 -51.93 -0.36 1.41 16 15 C -0.16 -2.86 6.48 -24.89 -0.16 -3.02 16 16 C 0.17 3.94 4.33 -3.06 -0.01 3.93 16 17 N -0.60 -14.19 1.87 -169.92 -0.32 -14.50 16 18 C -0.23 -6.08 9.79 -15.06 -0.15 -6.23 16 19 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 20 C 0.00 -0.09 5.49 -17.43 -0.10 -0.18 16 21 N -0.92 -25.38 10.31 55.49 0.57 -24.81 16 22 Si 0.91 21.14 29.55 -169.99 -5.02 16.11 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.13 2.51 6.43 -2.41 -0.02 2.50 16 27 H 0.05 0.87 7.90 -51.93 -0.41 0.46 16 28 H 0.05 0.79 5.83 -51.93 -0.30 0.48 16 29 H 0.13 2.60 4.75 -51.93 -0.25 2.36 16 30 H 0.11 1.31 7.98 -51.93 -0.41 0.90 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 35 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.02 0.30 8.12 -51.93 -0.42 -0.12 16 37 H 0.07 0.72 8.04 -51.93 -0.42 0.30 16 38 H 0.08 1.24 6.34 -51.93 -0.33 0.91 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.05 1.25 6.35 -51.93 -0.33 0.92 16 42 H 0.04 1.08 7.51 -51.93 -0.39 0.69 16 43 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 341.41 15.07 5.15 5.15 Total: -1.00 -29.57 341.41 -8.11 -37.68 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -7.29 Total: 1.69 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 0.66 Total: 12.32 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: -1.31 Total: -57.66 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.30 Total: -15.29 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.57 -8.11 -37.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033018002.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.764 kcal (2) G-P(sol) polarization free energy of solvation -29.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds