Wall clock time and date at job start Tue Mar 31 2020 03:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48561 * 111.00101 * 2 1 4 4 C 1.54379 * 104.59571 * 200.95893 * 3 2 1 5 5 C 1.54259 * 105.06154 * 23.85106 * 4 3 2 6 6 C 1.48560 * 111.00204 * 244.57874 * 2 1 3 7 7 H 1.08998 * 110.51084 * 40.21495 * 6 2 1 8 8 C 1.50696 * 110.41542 * 277.82006 * 6 2 1 9 9 O 1.21293 * 119.99532 * 344.82663 * 8 6 2 10 10 N 1.34766 * 120.00423 * 164.82604 * 8 6 2 11 11 C 1.46505 * 120.00269 * 179.97438 * 10 8 6 12 12 C 1.53003 * 109.47273 * 179.97438 * 11 10 8 13 13 H 1.08990 * 109.51530 * 304.90736 * 12 11 10 14 14 C 1.52873 * 109.58294 * 184.87975 * 12 11 10 15 15 N 1.47152 * 108.61053 * 187.92362 * 14 12 11 16 16 C 1.36936 * 120.98458 * 230.50489 * 15 14 12 17 17 H 1.07997 * 119.99645 * 153.36926 * 16 15 14 18 18 C 1.38804 * 120.00214 * 333.36546 * 16 15 14 19 19 N 1.31618 * 119.99962 * 334.97351 * 18 16 15 20 20 Si 1.86801 * 120.00162 * 154.97040 * 18 16 15 21 21 H 1.48501 * 109.46789 * 60.00126 * 20 18 16 22 22 H 1.48500 * 109.47159 * 300.00075 * 20 18 16 23 23 H 1.48501 * 109.47173 * 179.97438 * 20 18 16 24 24 C 1.47158 * 118.03223 * 50.22969 * 15 14 12 25 25 C 1.53289 * 108.38545 * 309.71929 * 24 15 14 26 26 O 1.42961 * 109.50765 * 65.00445 * 12 11 10 27 27 H 1.09003 * 109.47016 * 175.41464 * 1 2 3 28 28 H 1.08994 * 109.47261 * 295.41921 * 1 2 3 29 29 H 1.09000 * 109.46781 * 55.42137 * 1 2 3 30 30 H 1.09003 * 110.41247 * 82.17821 * 3 2 1 31 31 H 1.09001 * 110.51112 * 319.78421 * 3 2 1 32 32 H 1.09001 * 110.32336 * 264.95595 * 4 3 2 33 33 H 1.08997 * 110.32667 * 142.74712 * 4 3 2 34 34 H 1.09003 * 110.32535 * 241.10355 * 5 4 3 35 35 H 1.09004 * 110.41163 * 118.93964 * 5 4 3 36 36 H 0.96999 * 120.00146 * 0.02562 * 10 8 6 37 37 H 1.08999 * 109.46853 * 60.00014 * 11 10 8 38 38 H 1.09001 * 109.47366 * 300.00295 * 11 10 8 39 39 H 1.09003 * 109.61344 * 68.10795 * 14 12 11 40 40 H 1.09000 * 109.52732 * 307.69548 * 14 12 11 41 41 H 0.97000 * 120.00258 * 354.23486 * 19 18 16 42 42 H 1.09010 * 109.67605 * 69.43991 * 24 15 14 43 43 H 1.08992 * 109.68361 * 189.99430 * 24 15 14 44 44 H 1.08999 * 109.51748 * 172.22328 * 25 24 15 45 45 H 1.08999 * 109.51148 * 292.37452 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4433 -0.0539 -1.3584 6 6 2.0014 -0.5954 -1.2526 7 1 1.4105 -0.2730 -2.1099 8 6 2.0104 -2.0993 -1.1574 9 8 1.8829 -2.6394 -0.0789 10 7 2.1601 -2.8441 -2.2705 11 6 2.1695 -4.3062 -2.1779 12 6 2.3518 -4.9046 -3.5742 13 1 1.5801 -4.5180 -4.2396 14 6 2.2405 -6.4274 -3.4976 15 7 2.6064 -6.9914 -4.8065 16 6 1.7964 -7.9000 -5.4339 17 1 1.8137 -7.9859 -6.5103 18 6 0.9533 -8.7106 -4.6864 19 7 1.2446 -8.9841 -3.4323 20 14 -0.5950 -9.4132 -5.4601 21 1 -0.2269 -10.2566 -6.6256 22 1 -1.4715 -8.3021 -5.9101 23 1 -1.3170 -10.2399 -4.4598 24 6 3.8654 -6.5455 -5.4243 25 6 3.8950 -5.0130 -5.4094 26 8 3.6408 -4.5501 -4.0809 27 1 -0.3633 -1.0244 -0.0822 28 1 -0.3633 0.4411 0.9281 29 1 -0.3633 0.5832 -0.8461 30 1 2.0078 1.7917 1.0121 31 1 1.4105 2.0229 -0.6592 32 1 4.1483 1.1748 0.2935 33 1 3.6937 2.0995 -1.1699 34 1 4.1484 -0.7693 -0.9350 35 1 3.6943 0.1537 -2.3987 36 1 2.2625 -2.4122 -3.1330 37 1 1.2247 -4.6495 -1.7564 38 1 2.9907 -4.6244 -1.5357 39 1 1.2165 -6.7074 -3.2504 40 1 2.9195 -6.8043 -2.7327 41 1 2.0883 -8.6896 -3.0550 42 1 4.7107 -6.9346 -4.8566 43 1 3.9169 -6.9037 -6.4524 44 1 4.8751 -4.6645 -5.7350 45 1 3.1288 -4.6275 -6.0821 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035307123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:50 Heat of formation + Delta-G solvation = -49.302728 kcal Electronic energy + Delta-G solvation = -24909.031667 eV Core-core repulsion = 21348.263000 eV Total energy + Delta-G solvation = -3560.768666 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.22875 -38.84746 -37.85303 -34.94725 -34.48411 -32.47717 -31.51077 -31.06040 -29.56566 -27.21555 -25.97309 -25.50001 -23.16469 -22.65028 -21.58023 -21.22682 -20.24573 -19.49626 -17.65407 -17.34819 -16.40239 -16.05433 -15.85339 -15.10225 -14.99623 -14.52118 -14.42633 -14.28540 -14.03058 -13.84490 -13.67320 -13.52250 -13.10873 -12.79197 -12.64868 -12.39978 -12.15678 -11.81563 -11.73356 -11.66365 -11.33777 -11.22363 -10.92109 -10.79050 -10.64321 -10.57884 -10.17563 -10.00968 -9.68268 -9.53950 -9.21462 -8.88450 -8.70929 -8.44795 -6.99129 -6.15232 -3.33200 2.74451 3.08579 3.45018 3.47720 3.66629 3.88914 4.11563 4.33072 4.38468 4.50999 4.65717 4.86323 4.93206 5.00553 5.13581 5.16302 5.24733 5.34222 5.35820 5.40150 5.49094 5.50617 5.58896 5.70274 5.72890 5.79536 5.80141 5.86734 5.90408 5.95230 6.09842 6.22057 6.34581 6.47207 6.57579 6.62077 6.70438 6.74079 6.95839 7.65623 7.65715 7.86590 8.39215 8.45466 8.97430 9.72775 10.15841 11.12798 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.022848 B = 0.003338 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.222611 B = 8385.759060 C = 9154.573241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.490 5.490 3 C 0.031 3.969 4 C -0.122 4.122 5 C -0.112 4.112 6 C 0.043 3.957 7 H 0.072 0.928 8 C 0.518 3.482 9 O -0.520 6.520 10 N -0.723 5.723 11 C 0.133 3.867 12 C 0.063 3.937 13 H 0.059 0.941 14 C 0.130 3.870 15 N -0.601 5.601 16 C -0.355 4.355 17 H 0.059 0.941 18 C -0.023 4.023 19 N -0.911 5.911 20 Si 1.065 2.935 21 H -0.292 1.292 22 H -0.293 1.293 23 H -0.284 1.284 24 C 0.111 3.889 25 C 0.050 3.950 26 O -0.388 6.388 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.027 0.973 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.400 0.600 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.029 0.971 41 H 0.270 0.730 42 H 0.025 0.975 43 H 0.064 0.936 44 H 0.084 0.916 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.288 20.914 1.393 21.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.214 5.214 3 C -0.096 4.096 4 C -0.161 4.161 5 C -0.151 4.151 6 C -0.069 4.069 7 H 0.090 0.910 8 C 0.302 3.698 9 O -0.395 6.395 10 N -0.375 5.375 11 C 0.009 3.991 12 C 0.003 3.997 13 H 0.076 0.924 14 C 0.003 3.997 15 N -0.326 5.326 16 C -0.484 4.484 17 H 0.077 0.923 18 C -0.225 4.225 19 N -0.551 5.551 20 Si 0.895 3.105 21 H -0.219 1.219 22 H -0.220 1.220 23 H -0.209 1.209 24 C -0.015 4.015 25 C -0.028 4.028 26 O -0.307 6.307 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.046 0.954 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.233 0.767 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.047 0.953 41 H 0.081 0.919 42 H 0.043 0.957 43 H 0.082 0.918 44 H 0.102 0.898 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.088 19.360 3.067 19.632 hybrid contribution 0.990 1.307 -1.791 2.428 sum 2.078 20.667 1.277 20.810 Atomic orbital electron populations 1.22539 0.87322 1.02577 1.00971 1.65076 1.08604 1.14556 1.33172 1.23167 0.95217 0.89678 1.01568 1.22289 0.96798 0.97113 0.99854 1.22234 0.94366 0.97517 1.00960 1.22645 0.97987 0.92922 0.93345 0.91009 1.20213 0.76871 0.88506 0.84228 1.90715 1.47805 1.73384 1.27585 1.45972 1.74421 1.07342 1.09768 1.21383 1.02770 0.78503 0.96435 1.22877 0.85436 0.98151 0.93235 0.92354 1.21394 1.01493 0.88347 0.88440 1.44107 1.19665 1.48509 1.20303 1.19961 1.21035 1.15629 0.91777 0.92318 1.25907 1.04138 0.95546 0.96923 1.70794 1.25990 1.42737 1.15553 0.83521 0.76010 0.76042 0.74958 1.21904 1.22000 1.20923 1.21596 0.89525 0.92375 0.98018 1.23017 0.99880 0.96393 0.83556 1.87803 1.34541 1.77363 1.30999 0.90877 0.90829 0.95419 0.89663 0.93668 0.90580 0.90960 0.90278 0.90344 0.76652 0.89961 0.90745 0.89400 0.95262 0.91905 0.95666 0.91794 0.89822 0.93743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.44 60.06 0.57 0.72 16 2 N -0.49 -5.73 4.92 -231.72 -1.14 -6.87 16 3 C 0.03 0.27 6.49 -2.18 -0.01 0.25 16 4 C -0.12 -0.95 7.00 -25.35 -0.18 -1.13 16 5 C -0.11 -1.05 6.54 -25.35 -0.17 -1.22 16 6 C 0.04 0.49 2.68 -67.22 -0.18 0.31 16 7 H 0.07 0.68 7.97 -51.93 -0.41 0.27 16 8 C 0.52 7.71 6.72 -10.99 -0.07 7.63 16 9 O -0.52 -9.96 16.56 5.55 0.09 -9.87 16 10 N -0.72 -10.21 5.50 -60.29 -0.33 -10.54 16 11 C 0.13 2.24 5.34 -4.04 -0.02 2.22 16 12 C 0.06 1.16 2.80 -26.79 -0.07 1.08 16 13 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 14 C 0.13 3.00 4.15 -3.75 -0.02 2.98 16 15 N -0.60 -14.91 2.92 -172.09 -0.50 -15.42 16 16 C -0.36 -9.76 9.54 -15.06 -0.14 -9.90 16 17 H 0.06 1.61 7.94 -52.49 -0.42 1.19 16 18 C -0.02 -0.63 4.71 -17.43 -0.08 -0.71 16 19 N -0.91 -27.01 12.44 55.49 0.69 -26.32 16 20 Si 1.07 24.77 29.99 -169.99 -5.10 19.67 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.11 2.30 6.74 -3.53 -0.02 2.28 16 25 C 0.05 0.85 6.98 37.31 0.26 1.11 16 26 O -0.39 -7.03 10.33 -35.23 -0.36 -7.40 16 27 H 0.07 0.88 7.96 -51.93 -0.41 0.47 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.03 0.24 7.98 -51.93 -0.41 -0.17 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.33 7.91 -51.93 -0.41 -0.08 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.87 7.85 -51.93 -0.41 0.46 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.40 4.77 8.47 -40.82 -0.35 4.42 16 37 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.09 2.24 6.44 -51.93 -0.33 1.90 16 40 H 0.03 0.71 7.75 -51.93 -0.40 0.31 16 41 H 0.27 8.10 6.61 -40.82 -0.27 7.83 16 42 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 43 H 0.06 1.28 7.96 -51.93 -0.41 0.86 16 44 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 357.52 15.07 5.39 5.39 Total: -1.00 -33.10 357.52 -9.10 -42.20 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -7.69 Total: 3.52 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -0.15 Total: 5.62 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: -1.28 Total: -59.14 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.27 Total: -17.27 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.10 Total: 19.67 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.10 -9.10 -42.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035307123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.100 kcal (2) G-P(sol) polarization free energy of solvation -33.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds