Wall clock time and date at job start Tue Mar 31 2020 03:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47439 * 111.00337 * 2 1 4 4 C 1.54318 * 107.23143 * 123.25996 * 3 2 1 5 5 C 1.55141 * 103.01846 * 22.28549 * 4 3 2 6 6 H 1.08994 * 110.99225 * 82.48252 * 5 4 3 7 7 C 1.50707 * 110.98764 * 206.25242 * 5 4 3 8 8 O 1.21280 * 120.00403 * 0.02562 * 7 5 4 9 9 N 1.34779 * 119.99701 * 179.97438 * 7 5 4 10 10 C 1.46494 * 119.99890 * 180.02562 * 9 7 5 11 11 C 1.53001 * 109.47170 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.51281 * 60.00457 * 11 10 9 13 13 C 1.53297 * 109.51424 * 180.10250 * 11 10 9 14 14 N 1.47162 * 108.37581 * 172.17263 * 13 11 10 15 15 C 1.36946 * 120.94221 * 129.48536 * 14 13 11 16 16 H 1.07997 * 119.99797 * 206.29580 * 15 14 13 17 17 C 1.38813 * 119.99636 * 26.29763 * 15 14 13 18 18 N 1.31613 * 120.00374 * 16.88854 * 17 15 14 19 19 Si 1.86796 * 119.99682 * 196.89273 * 17 15 14 20 20 H 1.48497 * 109.47491 * 89.99856 * 19 17 15 21 21 H 1.48499 * 109.47210 * 210.00050 * 19 17 15 22 22 H 1.48502 * 109.47059 * 329.99796 * 19 17 15 23 23 C 1.47156 * 118.07981 * 309.54901 * 14 13 11 24 24 C 1.53299 * 108.38041 * 50.49919 * 23 14 13 25 25 O 1.42961 * 109.22561 * 307.69868 * 24 23 14 26 26 C 1.47848 * 111.00195 * 120.84833 * 2 1 3 27 27 H 1.08997 * 109.46831 * 59.86999 * 1 2 3 28 28 H 1.08995 * 109.47252 * 179.87289 * 1 2 3 29 29 H 1.08994 * 109.46854 * 299.87282 * 1 2 3 30 30 H 1.09003 * 109.89129 * 242.66640 * 3 2 1 31 31 H 1.09006 * 109.88859 * 3.69603 * 3 2 1 32 32 H 1.08993 * 110.70761 * 140.67111 * 4 3 2 33 33 H 1.09001 * 110.70521 * 263.73016 * 4 3 2 34 34 H 0.97002 * 119.99878 * 0.02562 * 9 7 5 35 35 H 1.08999 * 109.47775 * 300.00683 * 10 9 7 36 36 H 1.09003 * 109.46976 * 60.00769 * 10 9 7 37 37 H 1.08997 * 109.68064 * 291.95092 * 13 11 10 38 38 H 1.09007 * 109.68205 * 52.50497 * 13 11 10 39 39 H 0.96995 * 120.00525 * 179.97438 * 18 17 15 40 40 H 1.08999 * 109.67891 * 290.77893 * 23 14 13 41 41 H 1.09000 * 109.68341 * 170.22615 * 23 14 13 42 42 H 1.09005 * 109.50904 * 187.77206 * 24 23 14 43 43 H 1.09003 * 109.50961 * 67.62736 * 24 23 14 44 44 H 1.09000 * 110.37089 * 332.46390 * 26 2 1 45 45 H 1.08999 * 110.37430 * 94.80476 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3764 0.0000 4 6 2.9159 1.5135 1.2325 5 6 3.3047 0.0442 1.5437 6 1 4.1306 -0.2833 0.9123 7 6 3.6433 -0.1273 3.0022 8 8 3.5876 0.8231 3.7535 9 7 4.0068 -1.3372 3.4718 10 6 4.3354 -1.5040 4.8897 11 6 4.7129 -2.9623 5.1576 12 1 5.5772 -3.2320 4.5507 13 6 5.0544 -3.1385 6.6416 14 7 5.2287 -4.5749 6.9102 15 6 6.3405 -5.0398 7.5606 16 1 6.6805 -6.0512 7.3933 17 6 7.0304 -4.2112 8.4349 18 7 6.4578 -3.1203 8.8976 19 14 8.7715 -4.6445 8.9545 20 1 9.7375 -4.0339 8.0064 21 1 9.0239 -4.1241 10.3222 22 1 8.9372 -6.1203 8.9481 23 6 4.1745 -5.4969 6.4584 24 6 3.8771 -5.2055 4.9830 25 8 3.6113 -3.8099 4.8231 26 6 1.9989 -0.7078 1.1850 27 1 -0.3633 0.5158 -0.8888 28 1 -0.3633 -1.0276 -0.0023 29 1 -0.3633 0.5118 0.8911 30 1 2.5698 1.5540 -0.9106 31 1 1.1754 2.0893 0.0661 32 1 3.8001 2.1031 0.9906 33 1 2.3754 1.9572 2.0685 34 1 4.0510 -2.0974 2.8710 35 1 5.1753 -0.8585 5.1466 36 1 3.4712 -1.2347 5.4970 37 1 5.9775 -2.6065 6.8715 38 1 4.2422 -2.7471 7.2542 39 1 6.9396 -2.5414 9.5088 40 1 3.2733 -5.3431 7.0519 41 1 4.5155 -6.5264 6.5678 42 1 3.0067 -5.7805 4.6666 43 1 4.7386 -5.4840 4.3761 44 1 1.2890 -0.6503 2.0101 45 1 2.2148 -1.7478 0.9407 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035599065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:21 Heat of formation + Delta-G solvation = -52.436390 kcal Electronic energy + Delta-G solvation = -24730.647011 eV Core-core repulsion = 21169.742459 eV Total energy + Delta-G solvation = -3560.904552 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.23632 -38.72934 -38.03038 -34.84009 -34.33074 -32.47717 -31.38815 -30.94687 -29.33051 -27.39708 -26.24745 -25.33678 -23.34803 -22.59824 -21.55164 -21.08155 -20.17196 -19.47083 -17.44383 -17.00316 -16.41797 -15.95881 -15.79130 -15.14202 -15.04860 -14.80466 -14.35847 -14.08220 -13.99165 -13.70449 -13.67491 -13.26902 -13.22675 -12.92464 -12.80622 -12.25085 -11.96769 -11.80863 -11.58671 -11.52376 -11.39227 -11.12582 -10.95244 -10.87732 -10.76656 -10.45254 -10.28365 -10.07489 -9.80470 -9.67714 -9.11261 -8.88592 -8.64026 -8.58559 -6.79808 -5.87936 -3.32026 2.68120 3.21743 3.32683 3.39384 3.40888 3.77605 4.21752 4.26007 4.40804 4.41927 4.72894 4.97972 5.06870 5.09189 5.16054 5.16799 5.22083 5.32461 5.40009 5.51436 5.58069 5.58244 5.61240 5.64888 5.81155 5.82734 5.90035 5.98992 6.00155 6.08534 6.21428 6.33413 6.46887 6.58941 6.63630 6.70763 6.74553 7.02966 7.43831 7.63329 7.67631 7.80110 8.29183 8.32065 9.07133 9.70074 10.26858 11.20151 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.026672 B = 0.003126 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.528028 B = 8956.274254 C = 9648.084993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.534 5.534 3 C 0.039 3.961 4 C -0.122 4.122 5 C -0.120 4.120 6 H 0.109 0.891 7 C 0.518 3.482 8 O -0.543 6.543 9 N -0.717 5.717 10 C 0.132 3.868 11 C 0.055 3.945 12 H 0.056 0.944 13 C 0.153 3.847 14 N -0.595 5.595 15 C -0.258 4.258 16 H 0.069 0.931 17 C 0.003 3.997 18 N -0.902 5.902 19 Si 0.906 3.094 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.109 3.891 24 C 0.050 3.950 25 O -0.390 6.390 26 C 0.054 3.946 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.029 0.971 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.403 0.597 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.031 0.969 39 H 0.256 0.744 40 H 0.026 0.974 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.043 0.957 44 H 0.054 0.946 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.456 4.658 -17.514 19.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.258 5.258 3 C -0.088 4.088 4 C -0.161 4.161 5 C -0.142 4.142 6 H 0.127 0.873 7 C 0.303 3.697 8 O -0.421 6.421 9 N -0.367 5.367 10 C 0.008 3.992 11 C -0.004 4.004 12 H 0.074 0.926 13 C 0.026 3.974 14 N -0.319 5.319 15 C -0.387 4.387 16 H 0.087 0.913 17 C -0.196 4.196 18 N -0.545 5.545 19 Si 0.735 3.265 20 H -0.213 1.213 21 H -0.216 1.216 22 H -0.204 1.204 23 C -0.017 4.017 24 C -0.028 4.028 25 O -0.310 6.310 26 C -0.074 4.074 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.047 0.953 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.237 0.763 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.049 0.951 39 H 0.066 0.934 40 H 0.044 0.956 41 H 0.080 0.920 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.447 5.249 -17.322 19.973 hybrid contribution 0.877 -0.336 0.948 1.334 sum -7.570 4.913 -16.374 18.696 Atomic orbital electron populations 1.22560 0.87419 1.02308 1.00724 1.63609 1.08224 1.14364 1.39562 1.22900 0.98086 0.89311 0.98548 1.22654 1.00400 0.94862 0.98189 1.22461 0.99715 0.98134 0.93909 0.87300 1.20295 0.76861 0.82905 0.89594 1.90701 1.52767 1.39683 1.58914 1.45996 1.68734 1.10684 1.11303 1.21429 1.01660 0.95353 0.80768 1.23147 0.88662 0.88111 1.00514 0.92613 1.21309 1.01919 0.86219 0.87942 1.44057 1.19616 1.01610 1.66576 1.19201 1.01581 0.99116 1.18767 0.91306 1.25066 0.99547 0.98373 0.96621 1.70012 1.35864 1.15465 1.33207 0.86239 0.84564 0.78018 0.77645 1.21321 1.21625 1.20386 1.21603 0.92522 0.94976 0.92630 1.23009 0.99783 0.81898 0.98102 1.87771 1.38338 1.16621 1.88234 1.23000 0.94095 0.98713 0.91575 0.91257 0.91185 0.95274 0.90228 0.92394 0.90182 0.89921 0.76303 0.90006 0.90802 0.88596 0.95090 0.93369 0.95561 0.91958 0.89998 0.93839 0.92796 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.12 60.06 0.55 0.70 16 2 N -0.53 -5.04 5.44 -239.53 -1.30 -6.35 16 3 C 0.04 0.34 6.90 -2.84 -0.02 0.32 16 4 C -0.12 -1.24 6.07 -24.91 -0.15 -1.39 16 5 C -0.12 -1.27 3.43 -89.63 -0.31 -1.58 16 6 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 7 C 0.52 7.35 7.14 -10.98 -0.08 7.28 16 8 O -0.54 -9.82 15.72 5.56 0.09 -9.73 16 9 N -0.72 -9.96 5.45 -60.29 -0.33 -10.29 16 10 C 0.13 2.21 5.37 -4.04 -0.02 2.19 16 11 C 0.06 1.02 2.86 -26.58 -0.08 0.95 16 12 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 13 C 0.15 3.56 4.73 -3.53 -0.02 3.55 16 14 N -0.59 -14.68 3.05 -171.81 -0.52 -15.21 16 15 C -0.26 -6.92 9.65 -15.05 -0.15 -7.06 16 16 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 17 C 0.00 0.08 4.94 -17.43 -0.09 -0.01 16 18 N -0.90 -25.74 11.14 55.49 0.62 -25.12 16 19 Si 0.91 21.28 29.59 -169.99 -5.03 16.25 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 C 0.11 2.23 6.74 -3.53 -0.02 2.21 16 24 C 0.05 0.85 6.98 37.31 0.26 1.11 16 25 O -0.39 -7.05 10.14 -35.23 -0.36 -7.41 16 26 C 0.05 0.54 6.18 -2.30 -0.01 0.52 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.03 0.24 8.10 -51.93 -0.42 -0.18 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.46 7.58 -51.93 -0.39 0.06 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.99 7.40 -51.93 -0.38 0.60 16 34 H 0.40 4.79 8.35 -40.82 -0.34 4.45 16 35 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.10 2.47 6.15 -51.93 -0.32 2.15 16 38 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 1.21 7.96 -51.93 -0.41 0.79 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.05 0.60 7.67 -51.93 -0.40 0.20 16 45 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 357.20 15.07 5.38 5.38 Total: -1.00 -31.31 357.20 -9.30 -40.61 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -7.71 Total: 3.07 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -0.13 Total: 8.79 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -1.54 Total: -56.96 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.27 Total: -17.14 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.31 -9.30 -40.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035599065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.827 kcal (2) G-P(sol) polarization free energy of solvation -31.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds