Wall clock time and date at job start Tue Mar 31 2020 03:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47446 * 110.99718 * 2 1 4 4 C 1.54315 * 107.23178 * 236.73730 * 3 2 1 5 5 C 1.55140 * 103.02116 * 337.72176 * 4 3 2 6 6 H 1.09001 * 110.98878 * 277.55542 * 5 4 3 7 7 C 1.50696 * 110.99390 * 153.74528 * 5 4 3 8 8 O 1.21282 * 120.00219 * 359.97438 * 7 5 4 9 9 N 1.34781 * 120.00098 * 180.02562 * 7 5 4 10 10 C 1.46500 * 119.99949 * 179.97438 * 9 7 5 11 11 C 1.53001 * 109.47059 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.50975 * 305.10013 * 11 10 9 13 13 C 1.53295 * 109.51314 * 184.99936 * 11 10 9 14 14 N 1.47144 * 108.38582 * 187.77340 * 13 11 10 15 15 C 1.36941 * 120.98363 * 230.55779 * 14 13 11 16 16 H 1.07998 * 120.00179 * 26.24239 * 15 14 13 17 17 C 1.38809 * 120.00124 * 206.24048 * 15 14 13 18 18 N 1.31628 * 119.99958 * 16.90632 * 17 15 14 19 19 Si 1.86802 * 120.00318 * 196.90461 * 17 15 14 20 20 H 1.48502 * 109.46549 * 60.00104 * 19 17 15 21 21 H 1.48496 * 109.47101 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46903 * 300.00447 * 19 17 15 23 23 C 1.47154 * 118.03726 * 50.53407 * 14 13 11 24 24 C 1.53296 * 108.38556 * 309.46733 * 23 14 13 25 25 O 1.42956 * 109.51213 * 65.25369 * 11 10 9 26 26 C 1.47842 * 111.00277 * 239.15356 * 2 1 3 27 27 H 1.08990 * 109.47292 * 60.12889 * 1 2 3 28 28 H 1.08997 * 109.46955 * 180.12693 * 1 2 3 29 29 H 1.08999 * 109.47234 * 300.12437 * 1 2 3 30 30 H 1.09005 * 109.88839 * 117.33575 * 3 2 1 31 31 H 1.08998 * 110.02607 * 356.22339 * 3 2 1 32 32 H 1.09005 * 110.70631 * 96.09875 * 4 3 2 33 33 H 1.09002 * 110.70831 * 219.33454 * 4 3 2 34 34 H 0.96995 * 119.99739 * 359.97438 * 9 7 5 35 35 H 1.08997 * 109.47185 * 299.99974 * 10 9 7 36 36 H 1.09001 * 109.47183 * 59.99418 * 10 9 7 37 37 H 1.09000 * 109.68307 * 307.50267 * 13 11 10 38 38 H 1.09004 * 109.67943 * 68.01250 * 13 11 10 39 39 H 0.96997 * 119.99900 * 179.97438 * 18 17 15 40 40 H 1.09005 * 109.67846 * 69.18723 * 23 14 13 41 41 H 1.08994 * 109.68630 * 189.70330 * 23 14 13 42 42 H 1.08991 * 109.51348 * 172.22118 * 24 23 14 43 43 H 1.08997 * 109.50858 * 292.37763 * 24 23 14 44 44 H 1.08993 * 110.37616 * 265.19182 * 26 2 1 45 45 H 1.08998 * 110.37027 * 27.42430 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3765 0.0000 4 6 2.9158 1.5137 -1.2324 5 6 3.3047 0.0444 -1.5437 6 1 4.1302 -0.2832 -0.9118 7 6 3.6432 -0.1270 -3.0021 8 8 3.5875 0.8234 -3.7534 9 7 4.0069 -1.3369 -3.4719 10 6 4.3354 -1.5037 -4.8898 11 6 4.7130 -2.9619 -5.1577 12 1 5.5185 -3.2587 -4.4861 13 6 5.1767 -3.1121 -6.6111 14 7 5.3534 -4.5448 -6.8962 15 6 6.5099 -5.0140 -7.4598 16 1 7.4351 -4.4740 -7.3230 17 6 6.4931 -6.1837 -8.2070 18 7 5.3517 -6.6615 -8.6559 19 14 8.0902 -7.0798 -8.5755 20 1 8.7399 -7.4776 -7.3008 21 1 7.8025 -8.2921 -9.3834 22 1 8.9975 -6.1822 -9.3346 23 6 4.2509 -5.4586 -6.5574 24 6 3.8323 -5.1942 -5.1066 25 8 3.5745 -3.7981 -4.9381 26 6 1.9989 -0.7077 -1.1850 27 1 -0.3633 0.5118 -0.8910 28 1 -0.3633 -1.0276 0.0023 29 1 -0.3634 0.5158 0.8889 30 1 2.5696 1.5541 0.9106 31 1 1.1771 2.0912 -0.0675 32 1 2.3744 1.9546 -2.0695 33 1 3.8000 2.1034 -0.9904 34 1 4.0510 -2.0971 -2.8711 35 1 3.4713 -1.2343 -5.4971 36 1 5.1753 -0.8581 -5.1465 37 1 4.4253 -2.6943 -7.2812 38 1 6.1234 -2.5900 -6.7502 39 1 5.3400 -7.4787 -9.1783 40 1 3.4063 -5.2771 -7.2221 41 1 4.5846 -6.4910 -6.6614 42 1 2.9297 -5.7611 -4.8790 43 1 4.6343 -5.4999 -4.4348 44 1 2.2148 -1.7477 -0.9407 45 1 1.2881 -0.6519 -2.0095 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035599066.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:23 Heat of formation + Delta-G solvation = -52.386962 kcal Electronic energy + Delta-G solvation = -24558.743665 eV Core-core repulsion = 20997.841257 eV Total energy + Delta-G solvation = -3560.902409 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.31977 -38.76902 -38.08359 -34.94867 -34.31426 -32.53835 -31.56661 -30.74339 -29.38580 -27.52983 -26.26431 -25.34811 -23.25588 -22.66667 -21.66593 -21.13441 -20.26439 -19.49147 -17.52132 -16.93470 -16.51237 -15.98827 -15.92432 -15.26040 -14.93698 -14.87681 -14.42888 -14.14491 -13.95920 -13.75364 -13.69140 -13.34849 -13.18889 -13.04943 -12.74989 -12.37818 -12.00430 -11.85807 -11.61896 -11.59549 -11.42876 -11.15124 -11.00434 -10.86973 -10.76439 -10.44558 -10.32142 -10.02660 -9.92629 -9.67942 -9.11068 -9.01680 -8.67967 -8.57516 -6.79554 -5.87888 -3.31779 2.57963 3.12086 3.32813 3.38745 3.39539 3.72720 4.18034 4.21117 4.36610 4.40006 4.66400 4.93474 5.00542 5.03524 5.11327 5.13149 5.17419 5.29630 5.36060 5.44876 5.48139 5.54992 5.55908 5.60259 5.75536 5.76518 5.82420 5.94507 5.99864 6.11543 6.25153 6.32985 6.44678 6.49177 6.55564 6.66935 6.71422 7.06317 7.47499 7.51863 7.66830 7.81366 8.20634 8.29709 9.07597 9.70253 10.26963 11.20267 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.034378 B = 0.002792 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.276281 B =10027.767252 C =10445.277173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.533 5.533 3 C 0.039 3.961 4 C -0.122 4.122 5 C -0.121 4.121 6 H 0.110 0.890 7 C 0.520 3.480 8 O -0.544 6.544 9 N -0.717 5.717 10 C 0.129 3.871 11 C 0.065 3.935 12 H 0.059 0.941 13 C 0.122 3.878 14 N -0.594 5.594 15 C -0.257 4.257 16 H 0.069 0.931 17 C 0.003 3.997 18 N -0.903 5.903 19 Si 0.906 3.094 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.282 1.282 23 C 0.139 3.861 24 C 0.040 3.960 25 O -0.390 6.390 26 C 0.054 3.946 27 H 0.029 0.971 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.404 0.596 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.030 0.970 38 H 0.064 0.936 39 H 0.256 0.744 40 H 0.028 0.972 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.041 0.959 44 H 0.089 0.911 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.655 11.111 17.069 21.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.257 5.257 3 C -0.089 4.089 4 C -0.161 4.161 5 C -0.143 4.143 6 H 0.128 0.872 7 C 0.305 3.695 8 O -0.421 6.421 9 N -0.368 5.368 10 C 0.006 3.994 11 C 0.005 3.995 12 H 0.077 0.923 13 C -0.006 4.006 14 N -0.318 5.318 15 C -0.386 4.386 16 H 0.086 0.914 17 C -0.196 4.196 18 N -0.547 5.547 19 Si 0.736 3.264 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.208 1.208 23 C 0.014 3.986 24 C -0.038 4.038 25 O -0.309 6.309 26 C -0.074 4.074 27 H 0.047 0.953 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.238 0.762 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.047 0.953 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.046 0.954 41 H 0.112 0.888 42 H 0.100 0.900 43 H 0.059 0.941 44 H 0.108 0.892 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.743 11.439 16.883 21.479 hybrid contribution 0.750 -0.720 -0.851 1.344 sum -5.993 10.719 16.031 20.194 Atomic orbital electron populations 1.22563 0.87364 1.02363 1.00740 1.63612 1.08274 1.14315 1.39515 1.22899 0.98101 0.89338 0.98530 1.22662 1.00404 0.94801 0.98220 1.22467 0.99798 0.98222 0.93778 0.87231 1.20300 0.76691 0.82809 0.89655 1.90696 1.52791 1.39708 1.58950 1.45986 1.68848 1.10810 1.11164 1.21430 1.01582 0.95274 0.81157 1.22799 0.88780 0.88595 0.99303 0.92329 1.21439 0.99155 0.88167 0.91798 1.44061 1.16266 0.99867 1.71581 1.19156 0.86047 1.07585 1.25849 0.91370 1.25054 0.96929 1.00496 0.97123 1.70026 1.24462 1.22881 1.37326 0.86310 0.82967 0.79227 0.77920 1.20959 1.21523 1.20769 1.21445 0.90320 0.97150 0.89720 1.23326 0.99772 0.80813 0.99901 1.87784 1.34314 1.17704 1.91116 1.23004 0.94039 0.98754 0.91624 0.95270 0.91146 0.91224 0.90199 0.92367 0.89941 0.90158 0.76190 0.90716 0.90136 0.95257 0.91782 0.93404 0.95387 0.88755 0.90025 0.94073 0.89232 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.12 60.06 0.55 0.69 16 2 N -0.53 -4.82 5.44 -239.53 -1.30 -6.13 16 3 C 0.04 0.32 6.89 -2.84 -0.02 0.30 16 4 C -0.12 -1.15 6.07 -24.91 -0.15 -1.30 16 5 C -0.12 -1.18 3.43 -89.64 -0.31 -1.49 16 6 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 7 C 0.52 6.79 7.15 -10.99 -0.08 6.71 16 8 O -0.54 -9.11 15.71 5.56 0.09 -9.02 16 9 N -0.72 -9.07 5.51 -60.29 -0.33 -9.40 16 10 C 0.13 1.91 5.34 -4.04 -0.02 1.89 16 11 C 0.07 1.11 2.81 -26.58 -0.07 1.03 16 12 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 13 C 0.12 2.50 6.02 -3.54 -0.02 2.48 16 14 N -0.59 -14.69 3.05 -171.83 -0.52 -15.21 16 15 C -0.26 -6.92 9.65 -15.06 -0.15 -7.06 16 16 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 17 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 18 N -0.90 -25.76 11.14 55.49 0.62 -25.14 16 19 Si 0.91 21.23 29.59 -169.99 -5.03 16.20 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.14 3.27 5.45 -3.53 -0.02 3.25 16 24 C 0.04 0.74 6.99 37.31 0.26 1.00 16 25 O -0.39 -7.10 10.33 -35.23 -0.36 -7.46 16 26 C 0.05 0.51 6.18 -2.30 -0.01 0.49 16 27 H 0.03 0.23 8.10 -51.93 -0.42 -0.19 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.43 7.59 -51.93 -0.39 0.04 16 32 H 0.08 0.92 7.39 -51.93 -0.38 0.54 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.40 4.40 8.47 -40.82 -0.35 4.06 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 1.25 7.96 -51.93 -0.41 0.84 16 39 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.09 2.43 6.14 -51.93 -0.32 2.11 16 42 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.05 0.57 7.67 -51.93 -0.40 0.17 16 LS Contribution 357.50 15.07 5.39 5.39 Total: -1.00 -31.33 357.50 -9.31 -40.64 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.72 Total: 2.14 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -0.13 Total: 7.98 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -1.54 Total: -55.87 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.28 Total: -16.48 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.33 -9.31 -40.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035599066.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.743 kcal (2) G-P(sol) polarization free energy of solvation -31.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds