Wall clock time and date at job start Tue Mar 31 2020 03:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47446 * 110.99718 * 2 1 4 4 C 1.54315 * 107.23178 * 236.73730 * 3 2 1 5 5 C 1.55140 * 103.02116 * 337.72176 * 4 3 2 6 6 H 1.09001 * 110.98878 * 277.55542 * 5 4 3 7 7 C 1.50696 * 110.99390 * 153.74528 * 5 4 3 8 8 O 1.21282 * 120.00219 * 359.97438 * 7 5 4 9 9 N 1.34781 * 120.00098 * 180.02562 * 7 5 4 10 10 C 1.46500 * 119.99949 * 179.97438 * 9 7 5 11 11 C 1.53001 * 109.47059 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.50975 * 305.10013 * 11 10 9 13 13 C 1.53295 * 109.51314 * 184.99936 * 11 10 9 14 14 N 1.47144 * 108.38582 * 187.77340 * 13 11 10 15 15 C 1.36941 * 120.98363 * 230.55779 * 14 13 11 16 16 H 1.07998 * 120.00179 * 26.24239 * 15 14 13 17 17 C 1.38809 * 120.00124 * 206.24048 * 15 14 13 18 18 N 1.31628 * 119.99958 * 16.90632 * 17 15 14 19 19 Si 1.86802 * 120.00318 * 196.90461 * 17 15 14 20 20 H 1.48502 * 109.46549 * 60.00104 * 19 17 15 21 21 H 1.48496 * 109.47101 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46903 * 300.00447 * 19 17 15 23 23 C 1.47154 * 118.03726 * 50.53407 * 14 13 11 24 24 C 1.53296 * 108.38556 * 309.46733 * 23 14 13 25 25 O 1.42956 * 109.51213 * 65.25369 * 11 10 9 26 26 C 1.47842 * 111.00277 * 239.15356 * 2 1 3 27 27 H 1.08990 * 109.47292 * 60.12889 * 1 2 3 28 28 H 1.08997 * 109.46955 * 180.12693 * 1 2 3 29 29 H 1.08999 * 109.47234 * 300.12437 * 1 2 3 30 30 H 1.09005 * 109.88839 * 117.33575 * 3 2 1 31 31 H 1.08998 * 110.02607 * 356.22339 * 3 2 1 32 32 H 1.09005 * 110.70631 * 96.09875 * 4 3 2 33 33 H 1.09002 * 110.70831 * 219.33454 * 4 3 2 34 34 H 0.96995 * 119.99739 * 359.97438 * 9 7 5 35 35 H 1.08997 * 109.47185 * 299.99974 * 10 9 7 36 36 H 1.09001 * 109.47183 * 59.99418 * 10 9 7 37 37 H 1.09000 * 109.68307 * 307.50267 * 13 11 10 38 38 H 1.09004 * 109.67943 * 68.01250 * 13 11 10 39 39 H 0.96997 * 119.99900 * 179.97438 * 18 17 15 40 40 H 1.09005 * 109.67846 * 69.18723 * 23 14 13 41 41 H 1.08994 * 109.68630 * 189.70330 * 23 14 13 42 42 H 1.08991 * 109.51348 * 172.22118 * 24 23 14 43 43 H 1.08997 * 109.50858 * 292.37763 * 24 23 14 44 44 H 1.08993 * 110.37616 * 265.19182 * 26 2 1 45 45 H 1.08998 * 110.37027 * 27.42430 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3765 0.0000 4 6 2.9158 1.5137 -1.2324 5 6 3.3047 0.0444 -1.5437 6 1 4.1302 -0.2832 -0.9118 7 6 3.6432 -0.1270 -3.0021 8 8 3.5875 0.8234 -3.7534 9 7 4.0069 -1.3369 -3.4719 10 6 4.3354 -1.5037 -4.8898 11 6 4.7130 -2.9619 -5.1577 12 1 5.5185 -3.2587 -4.4861 13 6 5.1767 -3.1121 -6.6111 14 7 5.3534 -4.5448 -6.8962 15 6 6.5099 -5.0140 -7.4598 16 1 7.4351 -4.4740 -7.3230 17 6 6.4931 -6.1837 -8.2070 18 7 5.3517 -6.6615 -8.6559 19 14 8.0902 -7.0798 -8.5755 20 1 8.7399 -7.4776 -7.3008 21 1 7.8025 -8.2921 -9.3834 22 1 8.9975 -6.1822 -9.3346 23 6 4.2509 -5.4586 -6.5574 24 6 3.8323 -5.1942 -5.1066 25 8 3.5745 -3.7981 -4.9381 26 6 1.9989 -0.7077 -1.1850 27 1 -0.3633 0.5118 -0.8910 28 1 -0.3633 -1.0276 0.0023 29 1 -0.3634 0.5158 0.8889 30 1 2.5696 1.5541 0.9106 31 1 1.1771 2.0912 -0.0675 32 1 2.3744 1.9546 -2.0695 33 1 3.8000 2.1034 -0.9904 34 1 4.0510 -2.0971 -2.8711 35 1 3.4713 -1.2343 -5.4971 36 1 5.1753 -0.8581 -5.1465 37 1 4.4253 -2.6943 -7.2812 38 1 6.1234 -2.5900 -6.7502 39 1 5.3400 -7.4787 -9.1783 40 1 3.4063 -5.2771 -7.2221 41 1 4.5846 -6.4910 -6.6614 42 1 2.9297 -5.7611 -4.8790 43 1 4.6343 -5.4999 -4.4348 44 1 2.2148 -1.7477 -0.9407 45 1 1.2881 -0.6519 -2.0095 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035599066.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:23 Heat of formation + Delta-G solvation = -75.965349 kcal Electronic energy + Delta-G solvation = -24559.766101 eV Core-core repulsion = 20997.841257 eV Total energy + Delta-G solvation = -3561.924844 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.30252 -40.16711 -39.07318 -36.52496 -35.79355 -33.50199 -33.18793 -32.27470 -30.23598 -29.14681 -27.36486 -26.54634 -24.99939 -23.86893 -22.89552 -21.84054 -21.64295 -20.77855 -18.91651 -18.39572 -17.62950 -17.20221 -17.03023 -16.87513 -16.15667 -16.08307 -15.82189 -15.50751 -15.07861 -14.94339 -14.93943 -14.55938 -14.45497 -14.36584 -13.98812 -13.60505 -13.24120 -13.01219 -12.69182 -12.63601 -12.56221 -12.50109 -12.30996 -12.22886 -12.18134 -12.10594 -11.87890 -11.70308 -11.35663 -10.98758 -10.80367 -10.54548 -10.14909 -9.36151 -8.77070 -7.92451 -5.40114 1.46865 1.48674 1.55201 1.55879 2.09024 2.47545 2.76389 3.02879 3.22646 3.43095 3.47837 3.64949 3.84672 3.97213 4.05426 4.20578 4.25145 4.28480 4.37510 4.47627 4.49126 4.51330 4.52886 4.60943 4.69933 4.70452 4.75799 4.88019 4.89069 4.91102 5.00612 5.04838 5.05586 5.22977 5.23558 5.37621 5.54169 5.60025 5.88565 6.02125 6.24360 6.31791 6.51268 7.04840 7.18800 7.72873 8.26357 9.13493 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.034378 B = 0.002792 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.276281 B =10027.767252 C =10445.277173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.539 5.539 3 C 0.042 3.958 4 C -0.122 4.122 5 C -0.113 4.113 6 H 0.133 0.867 7 C 0.521 3.479 8 O -0.584 6.584 9 N -0.709 5.709 10 C 0.140 3.860 11 C 0.080 3.920 12 H 0.072 0.928 13 C 0.116 3.884 14 N -0.613 5.613 15 C -0.268 4.268 16 H 0.073 0.927 17 C -0.050 4.050 18 N -0.936 5.936 19 Si 0.972 3.028 20 H -0.274 1.274 21 H -0.294 1.294 22 H -0.276 1.276 23 C 0.143 3.857 24 C 0.054 3.946 25 O -0.389 6.389 26 C 0.056 3.944 27 H 0.023 0.977 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.415 0.585 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.016 0.984 38 H 0.072 0.928 39 H 0.252 0.748 40 H -0.003 1.003 41 H 0.068 0.932 42 H 0.109 0.891 43 H 0.053 0.947 44 H 0.101 0.899 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.005 11.408 19.508 23.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.263 5.263 3 C -0.086 4.086 4 C -0.161 4.161 5 C -0.135 4.135 6 H 0.151 0.849 7 C 0.308 3.692 8 O -0.464 6.464 9 N -0.360 5.360 10 C 0.015 3.985 11 C 0.021 3.979 12 H 0.089 0.911 13 C -0.010 4.010 14 N -0.338 5.338 15 C -0.398 4.398 16 H 0.091 0.909 17 C -0.246 4.246 18 N -0.582 5.582 19 Si 0.800 3.200 20 H -0.200 1.200 21 H -0.220 1.220 22 H -0.202 1.202 23 C 0.017 3.983 24 C -0.023 4.023 25 O -0.308 6.308 26 C -0.072 4.072 27 H 0.041 0.959 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.252 0.748 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.034 0.966 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.015 0.985 41 H 0.086 0.914 42 H 0.127 0.873 43 H 0.071 0.929 44 H 0.119 0.881 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.096 11.747 19.364 23.455 hybrid contribution 0.513 -0.745 -1.647 1.879 sum -5.583 11.002 17.718 21.590 Atomic orbital electron populations 1.22617 0.86714 1.02769 1.01080 1.63681 1.08984 1.14699 1.38942 1.22934 0.98167 0.89141 0.98321 1.22648 1.00837 0.94568 0.98010 1.22482 1.00795 0.98708 0.91477 0.84881 1.20849 0.75545 0.82038 0.90771 1.90685 1.54475 1.40995 1.60288 1.45869 1.68486 1.11366 1.10288 1.21174 1.01206 0.93661 0.82414 1.22633 0.88807 0.89639 0.96860 0.91058 1.21604 0.99389 0.86070 0.93974 1.44349 1.15978 1.01680 1.71769 1.19525 0.87071 1.07758 1.25449 0.90928 1.25845 0.99925 1.01387 0.97403 1.70189 1.26498 1.23116 1.38393 0.85269 0.79267 0.77655 0.77816 1.20008 1.22044 1.20170 1.21321 0.88919 0.95684 0.92379 1.23158 1.01376 0.81419 0.96368 1.87801 1.34872 1.17480 1.90689 1.22997 0.93354 0.99432 0.91385 0.95881 0.90782 0.89927 0.88813 0.91812 0.92257 0.89210 0.74822 0.92275 0.89456 0.96648 0.90970 0.93903 0.98466 0.91399 0.87291 0.92918 0.88055 0.94393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.12 127.69 1.16 1.39 16 2 N -0.54 -8.52 5.44 -911.74 -4.96 -13.48 16 3 C 0.04 0.59 6.89 86.64 0.60 1.19 16 4 C -0.12 -2.10 6.07 31.77 0.19 -1.91 16 5 C -0.11 -1.97 3.43 -10.16 -0.03 -2.00 16 6 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 7 C 0.52 12.87 7.15 87.65 0.63 13.49 16 8 O -0.58 -19.34 15.71 -3.04 -0.05 -19.39 16 9 N -0.71 -16.54 5.51 -463.06 -2.55 -19.09 16 10 C 0.14 3.96 5.34 86.38 0.46 4.43 16 11 C 0.08 2.60 2.81 30.69 0.09 2.69 16 12 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 13 C 0.12 4.74 6.02 86.36 0.52 5.26 16 14 N -0.61 -30.51 3.05 -697.55 -2.13 -32.63 16 15 C -0.27 -14.47 9.65 84.03 0.81 -13.66 16 16 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 17 C -0.05 -2.75 4.95 84.86 0.42 -2.33 16 18 N -0.94 -54.69 11.14 21.65 0.24 -54.45 16 19 Si 0.97 43.79 29.59 68.60 2.03 45.82 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 23 C 0.14 6.78 5.45 86.35 0.47 7.25 16 24 C 0.05 1.95 6.99 72.08 0.50 2.46 16 25 O -0.39 -13.47 10.33 -148.98 -1.54 -15.01 16 26 C 0.06 0.95 6.18 86.77 0.54 1.49 16 27 H 0.02 0.34 8.10 -2.39 -0.02 0.32 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.06 0.83 7.59 -2.39 -0.02 0.81 16 32 H 0.06 1.31 7.39 -2.38 -0.02 1.29 16 33 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.42 7.87 8.47 -92.71 -0.79 7.08 16 35 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.07 2.78 7.96 -2.39 -0.02 2.76 16 39 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 40 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 41 H 0.07 3.58 6.14 -2.39 -0.01 3.56 16 42 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 43 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.04 0.76 7.67 -2.39 -0.02 0.74 16 Total: -1.00 -68.08 357.50 -2.42 -70.50 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.18 Total: 18.00 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: 6.36 Total: 19.73 kcal Atomic # 7 Polarization: -110.25 SS G_CDS: -9.40 Total: -119.65 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -1.59 Total: -34.40 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -68.08 -2.42 -70.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035599066.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.468 kcal (2) G-P(sol) polarization free energy of solvation -68.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds