Wall clock time and date at job start Tue Mar 31 2020 03:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.47443 * 110.99626 * 2 1 4 4 C 1.54321 * 107.23006 * 123.26039 * 3 2 1 5 5 C 1.55141 * 103.01962 * 22.28135 * 4 3 2 6 6 H 1.08994 * 110.99253 * 82.47882 * 5 4 3 7 7 C 1.50706 * 110.98976 * 206.25894 * 5 4 3 8 8 O 1.21281 * 120.00077 * 359.97438 * 7 5 4 9 9 N 1.34771 * 119.99831 * 180.02562 * 7 5 4 10 10 C 1.46507 * 120.00136 * 179.97438 * 9 7 5 11 11 C 1.52996 * 109.47247 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.51233 * 304.90036 * 11 10 9 13 13 C 1.53293 * 109.51227 * 184.74812 * 11 10 9 14 14 N 1.47153 * 108.38510 * 187.77339 * 13 11 10 15 15 C 1.36931 * 120.98267 * 230.55533 * 14 13 11 16 16 H 1.08004 * 120.00424 * 26.21589 * 15 14 13 17 17 C 1.38812 * 120.00362 * 206.21483 * 15 14 13 18 18 N 1.31616 * 119.99868 * 16.92250 * 17 15 14 19 19 Si 1.86804 * 120.00449 * 196.92770 * 17 15 14 20 20 H 1.48501 * 109.46794 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47149 * 119.99446 * 19 17 15 22 22 H 1.48495 * 109.46907 * 239.99845 * 19 17 15 23 23 C 1.47153 * 118.03473 * 50.54017 * 14 13 11 24 24 C 1.53299 * 108.38166 * 309.46096 * 23 14 13 25 25 O 1.42960 * 109.22372 * 52.30411 * 24 23 14 26 26 C 1.47841 * 110.99673 * 120.84310 * 2 1 3 27 27 H 1.09003 * 109.46666 * 59.87174 * 1 2 3 28 28 H 1.08995 * 109.47071 * 299.87416 * 1 2 3 29 29 H 1.08999 * 109.47099 * 179.87078 * 1 2 3 30 30 H 1.09003 * 109.88898 * 242.65954 * 3 2 1 31 31 H 1.08994 * 109.89237 * 3.69385 * 3 2 1 32 32 H 1.09004 * 110.70969 * 140.66150 * 4 3 2 33 33 H 1.09001 * 110.70548 * 263.72466 * 4 3 2 34 34 H 0.97001 * 120.00118 * 0.02562 * 9 7 5 35 35 H 1.08995 * 109.47210 * 300.00371 * 10 9 7 36 36 H 1.09008 * 109.46246 * 60.00083 * 10 9 7 37 37 H 1.08996 * 109.68144 * 307.50139 * 13 11 10 38 38 H 1.09004 * 109.68128 * 68.05023 * 13 11 10 39 39 H 0.97004 * 120.00668 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.68120 * 189.74018 * 23 14 13 41 41 H 1.08999 * 109.71373 * 69.20322 * 23 14 13 42 42 H 1.08999 * 109.51506 * 292.37916 * 24 23 14 43 43 H 1.08992 * 109.55099 * 172.25254 * 24 23 14 44 44 H 1.08997 * 110.37878 * 332.46378 * 26 2 1 45 45 H 1.08997 * 110.37322 * 94.81139 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9159 1.5136 1.2325 5 6 3.3048 0.0444 1.5438 6 1 4.1307 -0.2831 0.9124 7 6 3.6431 -0.1271 3.0023 8 8 3.5882 0.8236 3.7534 9 7 4.0077 -1.3366 3.4718 10 6 4.3372 -1.5033 4.8895 11 6 4.7146 -2.9616 5.1574 12 1 3.9089 -3.6139 4.8207 13 6 4.9444 -3.1633 6.6596 14 7 5.4851 -4.5158 6.8689 15 6 4.9282 -5.3629 7.7894 16 1 3.8887 -5.2561 8.0623 17 6 5.6997 -6.3591 8.3719 18 7 7.0129 -6.2957 8.3093 19 14 4.8744 -7.7897 9.2446 20 1 3.3999 -7.6274 9.1756 21 1 5.2640 -9.0625 8.5862 22 1 5.3030 -7.8162 10.6661 23 6 6.6416 -4.9312 6.0594 24 6 6.3292 -4.6433 4.5865 25 8 5.9153 -3.2817 4.4505 26 6 1.9988 -0.7076 1.1850 27 1 -0.3633 0.5158 -0.8889 28 1 -0.3633 0.5119 0.8911 29 1 -0.3633 -1.0276 -0.0023 30 1 2.5698 1.5541 -0.9105 31 1 1.1754 2.0892 0.0660 32 1 3.8001 2.1033 0.9906 33 1 2.3753 1.9574 2.0685 34 1 4.0528 -2.0967 2.8708 35 1 5.1769 -0.8573 5.1458 36 1 3.4732 -1.2344 5.4973 37 1 5.6559 -2.4228 7.0248 38 1 3.9993 -3.0592 7.1927 39 1 7.5521 -6.9919 8.7160 40 1 6.8206 -5.9978 6.1951 41 1 7.5245 -4.3692 6.3641 42 1 5.5296 -5.3024 4.2483 43 1 7.2213 -4.8145 3.9842 44 1 1.2890 -0.6502 2.0102 45 1 2.2148 -1.7477 0.9408 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035599068.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:27 Heat of formation + Delta-G solvation = -52.430454 kcal Electronic energy + Delta-G solvation = -24518.333482 eV Core-core repulsion = 20957.429187 eV Total energy + Delta-G solvation = -3560.904295 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.32722 -38.77478 -38.09138 -34.95020 -34.31578 -32.55071 -31.56964 -30.74583 -29.40130 -27.53558 -26.28035 -25.35483 -23.25699 -22.67647 -21.67167 -21.15208 -20.26051 -19.50421 -17.52424 -16.94958 -16.47679 -16.10160 -15.84570 -15.28819 -14.95284 -14.85130 -14.46387 -14.20659 -13.89268 -13.77255 -13.64665 -13.41344 -13.23239 -13.00903 -12.76239 -12.38280 -12.03012 -11.86319 -11.63017 -11.62457 -11.43058 -11.16233 -11.01242 -10.90158 -10.74484 -10.44567 -10.28586 -10.03356 -9.92654 -9.67538 -9.10994 -9.01622 -8.70252 -8.58470 -6.79895 -5.88229 -3.32047 2.58074 3.11493 3.31015 3.39076 3.41116 3.70648 4.18194 4.19726 4.35195 4.39616 4.65414 4.91155 4.99736 5.02087 5.10458 5.11043 5.16151 5.29438 5.32567 5.44531 5.47766 5.52254 5.53900 5.58650 5.75111 5.76350 5.81869 5.93807 5.99963 6.11668 6.25206 6.32995 6.44616 6.48910 6.53346 6.64552 6.71285 7.06360 7.47632 7.51879 7.67197 7.81453 8.20608 8.29192 9.07282 9.69965 10.26680 11.19914 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.028935 B = 0.002795 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.460043 B =10016.687482 C =10294.714243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.533 5.533 3 C 0.039 3.961 4 C -0.122 4.122 5 C -0.121 4.121 6 H 0.111 0.889 7 C 0.520 3.480 8 O -0.544 6.544 9 N -0.717 5.717 10 C 0.129 3.871 11 C 0.065 3.935 12 H 0.059 0.941 13 C 0.122 3.878 14 N -0.594 5.594 15 C -0.256 4.256 16 H 0.069 0.931 17 C 0.002 3.998 18 N -0.902 5.902 19 Si 0.905 3.095 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.289 1.289 23 C 0.139 3.861 24 C 0.040 3.960 25 O -0.390 6.390 26 C 0.053 3.947 27 H 0.069 0.931 28 H 0.029 0.971 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.404 0.596 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.030 0.970 38 H 0.064 0.936 39 H 0.255 0.745 40 H 0.094 0.906 41 H 0.028 0.972 42 H 0.041 0.959 43 H 0.082 0.918 44 H 0.053 0.947 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.046 10.629 -16.617 21.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.257 5.257 3 C -0.089 4.089 4 C -0.161 4.161 5 C -0.143 4.143 6 H 0.129 0.871 7 C 0.306 3.694 8 O -0.421 6.421 9 N -0.368 5.368 10 C 0.005 3.995 11 C 0.005 3.995 12 H 0.076 0.924 13 C -0.006 4.006 14 N -0.318 5.318 15 C -0.385 4.385 16 H 0.087 0.913 17 C -0.197 4.197 18 N -0.547 5.547 19 Si 0.735 3.265 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.216 1.216 23 C 0.013 3.987 24 C -0.038 4.038 25 O -0.309 6.309 26 C -0.075 4.075 27 H 0.088 0.912 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.238 0.762 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.048 0.952 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.113 0.887 41 H 0.046 0.954 42 H 0.059 0.941 43 H 0.100 0.900 44 H 0.071 0.929 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.726 11.055 -16.525 21.712 hybrid contribution -0.596 -1.028 1.135 1.643 sum -9.322 10.027 -15.390 20.598 Atomic orbital electron populations 1.22567 0.87378 1.02316 1.00764 1.63607 1.08238 1.14409 1.39460 1.22904 0.98093 0.89260 0.98595 1.22655 1.00425 0.94823 0.98177 1.22473 0.99767 0.98180 0.93846 0.87120 1.20294 0.76740 0.82786 0.89621 1.90696 1.52963 1.39566 1.58923 1.45984 1.68558 1.10991 1.11265 1.21432 1.00868 0.96083 0.81067 1.22799 0.87680 0.93424 0.95559 0.92354 1.21442 0.98415 0.89048 0.91669 1.44079 1.35267 1.09664 1.42792 1.19235 0.93298 1.09210 1.16723 0.91291 1.25055 0.95209 1.00908 0.98494 1.70042 1.03255 1.33862 1.47500 0.86180 0.78909 0.82416 0.79016 1.20196 1.21455 1.21604 1.21448 0.89219 1.02047 0.85951 1.23326 0.98483 0.81841 1.00156 1.87789 1.42411 1.29116 1.71592 1.23010 0.94059 0.98779 0.91616 0.91199 0.95286 0.91183 0.90164 0.92361 0.90133 0.89948 0.76184 0.90647 0.90203 0.95226 0.91796 0.93511 0.88748 0.95358 0.94088 0.90008 0.92887 0.89281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.12 60.07 0.55 0.68 16 2 N -0.53 -4.68 5.44 -239.52 -1.30 -5.99 16 3 C 0.04 0.31 6.90 -2.83 -0.02 0.29 16 4 C -0.12 -1.15 6.07 -24.91 -0.15 -1.30 16 5 C -0.12 -1.18 3.43 -89.63 -0.31 -1.49 16 6 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 7 C 0.52 6.79 7.14 -10.98 -0.08 6.71 16 8 O -0.54 -9.10 15.72 5.56 0.09 -9.02 16 9 N -0.72 -9.06 5.50 -60.29 -0.33 -9.40 16 10 C 0.13 1.91 5.35 -4.04 -0.02 1.89 16 11 C 0.07 1.11 2.81 -26.58 -0.07 1.03 16 12 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 13 C 0.12 2.50 6.02 -3.53 -0.02 2.48 16 14 N -0.59 -14.68 3.05 -171.83 -0.52 -15.20 16 15 C -0.26 -6.86 9.65 -15.06 -0.15 -7.01 16 16 H 0.07 1.81 7.88 -52.48 -0.41 1.40 16 17 C 0.00 0.06 4.95 -17.43 -0.09 -0.03 16 18 N -0.90 -25.75 11.14 55.49 0.62 -25.13 16 19 Si 0.91 21.21 29.59 -169.99 -5.03 16.18 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 C 0.14 3.26 5.45 -3.53 -0.02 3.24 16 24 C 0.04 0.74 6.98 37.31 0.26 1.01 16 25 O -0.39 -7.12 10.33 -35.23 -0.36 -7.49 16 26 C 0.05 0.48 6.18 -2.30 -0.01 0.46 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.03 0.22 8.10 -51.93 -0.42 -0.20 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.42 7.58 -51.93 -0.39 0.03 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.91 7.40 -51.93 -0.38 0.53 16 34 H 0.40 4.40 8.47 -40.82 -0.35 4.06 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.08 1.14 8.14 -51.92 -0.42 0.72 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 1.25 7.96 -51.93 -0.41 0.83 16 39 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.09 2.43 6.14 -51.93 -0.32 2.11 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 44 H 0.05 0.51 7.67 -51.93 -0.40 0.12 16 45 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 357.50 15.07 5.39 5.39 Total: -1.00 -31.41 357.50 -9.31 -40.72 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.72 Total: 1.96 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -0.13 Total: 7.97 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -1.54 Total: -55.72 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.28 Total: -16.50 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.41 -9.31 -40.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035599068.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.709 kcal (2) G-P(sol) polarization free energy of solvation -31.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds