Wall clock time and date at job start Tue Mar 31 2020 03:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.47443 * 110.99626 * 2 1 4 4 C 1.54321 * 107.23006 * 123.26039 * 3 2 1 5 5 C 1.55141 * 103.01962 * 22.28135 * 4 3 2 6 6 H 1.08994 * 110.99253 * 82.47882 * 5 4 3 7 7 C 1.50706 * 110.98976 * 206.25894 * 5 4 3 8 8 O 1.21281 * 120.00077 * 359.97438 * 7 5 4 9 9 N 1.34771 * 119.99831 * 180.02562 * 7 5 4 10 10 C 1.46507 * 120.00136 * 179.97438 * 9 7 5 11 11 C 1.52996 * 109.47247 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.51233 * 304.90036 * 11 10 9 13 13 C 1.53293 * 109.51227 * 184.74812 * 11 10 9 14 14 N 1.47153 * 108.38510 * 187.77339 * 13 11 10 15 15 C 1.36931 * 120.98267 * 230.55533 * 14 13 11 16 16 H 1.08004 * 120.00424 * 26.21589 * 15 14 13 17 17 C 1.38812 * 120.00362 * 206.21483 * 15 14 13 18 18 N 1.31616 * 119.99868 * 16.92250 * 17 15 14 19 19 Si 1.86804 * 120.00449 * 196.92770 * 17 15 14 20 20 H 1.48501 * 109.46794 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47149 * 119.99446 * 19 17 15 22 22 H 1.48495 * 109.46907 * 239.99845 * 19 17 15 23 23 C 1.47153 * 118.03473 * 50.54017 * 14 13 11 24 24 C 1.53299 * 108.38166 * 309.46096 * 23 14 13 25 25 O 1.42960 * 109.22372 * 52.30411 * 24 23 14 26 26 C 1.47841 * 110.99673 * 120.84310 * 2 1 3 27 27 H 1.09003 * 109.46666 * 59.87174 * 1 2 3 28 28 H 1.08995 * 109.47071 * 299.87416 * 1 2 3 29 29 H 1.08999 * 109.47099 * 179.87078 * 1 2 3 30 30 H 1.09003 * 109.88898 * 242.65954 * 3 2 1 31 31 H 1.08994 * 109.89237 * 3.69385 * 3 2 1 32 32 H 1.09004 * 110.70969 * 140.66150 * 4 3 2 33 33 H 1.09001 * 110.70548 * 263.72466 * 4 3 2 34 34 H 0.97001 * 120.00118 * 0.02562 * 9 7 5 35 35 H 1.08995 * 109.47210 * 300.00371 * 10 9 7 36 36 H 1.09008 * 109.46246 * 60.00083 * 10 9 7 37 37 H 1.08996 * 109.68144 * 307.50139 * 13 11 10 38 38 H 1.09004 * 109.68128 * 68.05023 * 13 11 10 39 39 H 0.97004 * 120.00668 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.68120 * 189.74018 * 23 14 13 41 41 H 1.08999 * 109.71373 * 69.20322 * 23 14 13 42 42 H 1.08999 * 109.51506 * 292.37916 * 24 23 14 43 43 H 1.08992 * 109.55099 * 172.25254 * 24 23 14 44 44 H 1.08997 * 110.37878 * 332.46378 * 26 2 1 45 45 H 1.08997 * 110.37322 * 94.81139 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9159 1.5136 1.2325 5 6 3.3048 0.0444 1.5438 6 1 4.1307 -0.2831 0.9124 7 6 3.6431 -0.1271 3.0023 8 8 3.5882 0.8236 3.7534 9 7 4.0077 -1.3366 3.4718 10 6 4.3372 -1.5033 4.8895 11 6 4.7146 -2.9616 5.1574 12 1 3.9089 -3.6139 4.8207 13 6 4.9444 -3.1633 6.6596 14 7 5.4851 -4.5158 6.8689 15 6 4.9282 -5.3629 7.7894 16 1 3.8887 -5.2561 8.0623 17 6 5.6997 -6.3591 8.3719 18 7 7.0129 -6.2957 8.3093 19 14 4.8744 -7.7897 9.2446 20 1 3.3999 -7.6274 9.1756 21 1 5.2640 -9.0625 8.5862 22 1 5.3030 -7.8162 10.6661 23 6 6.6416 -4.9312 6.0594 24 6 6.3292 -4.6433 4.5865 25 8 5.9153 -3.2817 4.4505 26 6 1.9988 -0.7076 1.1850 27 1 -0.3633 0.5158 -0.8889 28 1 -0.3633 0.5119 0.8911 29 1 -0.3633 -1.0276 -0.0023 30 1 2.5698 1.5541 -0.9105 31 1 1.1754 2.0892 0.0660 32 1 3.8001 2.1033 0.9906 33 1 2.3753 1.9574 2.0685 34 1 4.0528 -2.0967 2.8708 35 1 5.1769 -0.8573 5.1458 36 1 3.4732 -1.2344 5.4973 37 1 5.6559 -2.4228 7.0248 38 1 3.9993 -3.0592 7.1927 39 1 7.5521 -6.9919 8.7160 40 1 6.8206 -5.9978 6.1951 41 1 7.5245 -4.3692 6.3641 42 1 5.5296 -5.3024 4.2483 43 1 7.2213 -4.8145 3.9842 44 1 1.2890 -0.6502 2.0102 45 1 2.2148 -1.7477 0.9408 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035599068.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:27 Heat of formation + Delta-G solvation = -76.049771 kcal Electronic energy + Delta-G solvation = -24519.357693 eV Core-core repulsion = 20957.429187 eV Total energy + Delta-G solvation = -3561.928505 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.30279 -40.16708 -39.07234 -36.52731 -35.79300 -33.50218 -33.18767 -32.27394 -30.23641 -29.15050 -27.36269 -26.54182 -25.00025 -23.86960 -22.89551 -21.83556 -21.64411 -20.78619 -18.91660 -18.41036 -17.51601 -17.37748 -16.93792 -16.88312 -16.17702 -16.09226 -15.79895 -15.50383 -15.11705 -14.99196 -14.82350 -14.59845 -14.45151 -14.35773 -13.99016 -13.59675 -13.24165 -13.03553 -12.74382 -12.63392 -12.53694 -12.50638 -12.30745 -12.23209 -12.15830 -12.06336 -11.88103 -11.70420 -11.35420 -10.98587 -10.81103 -10.55634 -10.14862 -9.35338 -8.77383 -7.92699 -5.40278 1.45534 1.47426 1.55531 1.58064 2.08795 2.47155 2.76579 3.03067 3.22577 3.42598 3.47667 3.65214 3.84438 3.97252 4.05841 4.20176 4.25055 4.28759 4.37761 4.47157 4.49878 4.51454 4.53157 4.60572 4.69295 4.70467 4.76323 4.88031 4.89205 4.91188 5.01140 5.04894 5.05866 5.23054 5.23269 5.37531 5.54378 5.60246 5.89047 6.02720 6.24335 6.31799 6.51334 7.04695 7.18822 7.72631 8.26144 9.13510 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.028935 B = 0.002795 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.460043 B =10016.687482 C =10294.714243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.540 5.540 3 C 0.043 3.957 4 C -0.122 4.122 5 C -0.114 4.114 6 H 0.129 0.871 7 C 0.521 3.479 8 O -0.584 6.584 9 N -0.709 5.709 10 C 0.140 3.860 11 C 0.080 3.920 12 H 0.071 0.929 13 C 0.116 3.884 14 N -0.613 5.613 15 C -0.266 4.266 16 H 0.073 0.927 17 C -0.051 4.051 18 N -0.936 5.936 19 Si 0.972 3.028 20 H -0.265 1.265 21 H -0.287 1.287 22 H -0.294 1.294 23 C 0.142 3.858 24 C 0.054 3.946 25 O -0.389 6.389 26 C 0.057 3.943 27 H 0.081 0.919 28 H 0.024 0.976 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.415 0.585 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.016 0.984 38 H 0.072 0.928 39 H 0.252 0.748 40 H 0.068 0.932 41 H -0.002 1.002 42 H 0.053 0.947 43 H 0.109 0.891 44 H 0.043 0.957 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.445 10.452 -18.607 23.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.264 5.264 3 C -0.085 4.085 4 C -0.161 4.161 5 C -0.135 4.135 6 H 0.147 0.853 7 C 0.308 3.692 8 O -0.464 6.464 9 N -0.360 5.360 10 C 0.015 3.985 11 C 0.021 3.979 12 H 0.089 0.911 13 C -0.010 4.010 14 N -0.338 5.338 15 C -0.395 4.395 16 H 0.091 0.909 17 C -0.246 4.246 18 N -0.582 5.582 19 Si 0.799 3.201 20 H -0.189 1.189 21 H -0.214 1.214 22 H -0.221 1.221 23 C 0.017 3.983 24 C -0.023 4.023 25 O -0.309 6.309 26 C -0.071 4.071 27 H 0.099 0.901 28 H 0.043 0.957 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.252 0.748 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.034 0.966 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.016 0.984 42 H 0.071 0.929 43 H 0.127 0.873 44 H 0.061 0.939 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.147 10.883 -18.554 23.783 hybrid contribution -0.161 -0.899 1.785 2.005 sum -10.308 9.984 -16.769 22.071 Atomic orbital electron populations 1.22623 0.86610 1.02818 1.01111 1.63673 1.09054 1.14664 1.39049 1.22922 0.98137 0.89221 0.98218 1.22641 1.00775 0.94568 0.98111 1.22479 1.00867 0.98743 0.91454 0.85293 1.20840 0.75610 0.82008 0.90721 1.90684 1.54660 1.40839 1.60259 1.45867 1.68139 1.11551 1.10441 1.21175 1.00570 0.94071 0.82647 1.22632 0.87572 0.94976 0.92743 0.91078 1.21607 0.98124 0.86802 0.94516 1.44363 1.35446 1.11079 1.42895 1.19584 0.93600 1.09593 1.16747 0.90931 1.25840 0.95708 1.03341 0.99733 1.70196 1.04603 1.34568 1.48859 0.85146 0.78499 0.79108 0.77304 1.18878 1.21360 1.22114 1.21324 0.88106 0.99863 0.89056 1.23158 1.00122 0.82251 0.96788 1.87804 1.42967 1.28818 1.71262 1.23015 0.93211 0.99410 0.91502 0.90064 0.95728 0.90667 0.89015 0.91715 0.89545 0.92046 0.74818 0.92136 0.89584 0.96592 0.90998 0.93915 0.91400 0.98423 0.92903 0.87286 0.93902 0.87944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.12 127.69 1.16 1.37 16 2 N -0.54 -8.19 5.44 -911.69 -4.96 -13.16 16 3 C 0.04 0.59 6.90 86.65 0.60 1.19 16 4 C -0.12 -2.12 6.07 31.78 0.19 -1.93 16 5 C -0.11 -1.99 3.43 -10.15 -0.03 -2.03 16 6 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 7 C 0.52 12.87 7.14 87.66 0.63 13.50 16 8 O -0.58 -19.32 15.72 -3.03 -0.05 -19.37 16 9 N -0.71 -16.52 5.50 -463.05 -2.55 -19.07 16 10 C 0.14 3.95 5.35 86.38 0.46 4.42 16 11 C 0.08 2.60 2.81 30.69 0.09 2.69 16 12 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 13 C 0.12 4.73 6.02 86.35 0.52 5.25 16 14 N -0.61 -30.46 3.05 -697.54 -2.13 -32.59 16 15 C -0.27 -14.30 9.65 84.03 0.81 -13.49 16 16 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16 17 C -0.05 -2.78 4.95 84.86 0.42 -2.36 16 18 N -0.94 -54.68 11.14 21.65 0.24 -54.44 16 19 Si 0.97 43.79 29.59 68.60 2.03 45.82 16 20 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 21 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 22 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 23 C 0.14 6.76 5.45 86.35 0.47 7.23 16 24 C 0.05 1.95 6.98 72.08 0.50 2.46 16 25 O -0.39 -13.48 10.33 -148.98 -1.54 -15.02 16 26 C 0.06 0.89 6.18 86.77 0.54 1.42 16 27 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.02 0.33 8.10 -2.39 -0.02 0.31 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 0.82 7.58 -2.39 -0.02 0.80 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 1.33 7.40 -2.39 -0.02 1.32 16 34 H 0.42 7.87 8.47 -92.71 -0.79 7.08 16 35 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 37 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.07 2.77 7.96 -2.38 -0.02 2.75 16 39 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 40 H 0.07 3.58 6.14 -2.39 -0.01 3.56 16 41 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 42 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 44 H 0.04 0.76 7.67 -2.39 -0.02 0.74 16 45 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -68.06 357.50 -2.42 -70.48 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.18 Total: 17.63 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 6.36 Total: 19.72 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -9.40 Total: -119.25 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -1.59 Total: -34.39 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -68.06 -2.42 -70.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035599068.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.573 kcal (2) G-P(sol) polarization free energy of solvation -68.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds