Wall clock time and date at job start Tue Mar 31 2020 03:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46903 * 109.47458 * 2 1 4 4 C 1.47019 * 110.99898 * 287.87122 * 3 2 1 5 5 C 1.53096 * 109.25682 * 177.60297 * 4 3 2 6 6 O 1.43011 * 109.25855 * 56.85323 * 5 4 3 7 7 C 1.43023 * 113.77553 * 301.35444 * 6 5 4 8 8 C 1.47008 * 111.00445 * 164.23690 * 3 2 1 9 9 H 1.09000 * 109.50972 * 62.41163 * 8 3 2 10 10 C 1.50702 * 109.50748 * 302.33042 * 8 3 2 11 11 O 1.21284 * 119.99668 * 331.99624 * 10 8 3 12 12 N 1.34778 * 120.00464 * 152.00144 * 10 8 3 13 13 C 1.46496 * 119.99936 * 179.97438 * 12 10 8 14 14 C 1.53005 * 109.46840 * 179.97438 * 13 12 10 15 15 H 1.08997 * 112.96375 * 55.33120 * 14 13 12 16 16 C 1.53946 * 113.76938 * 187.01401 * 14 13 12 17 17 C 1.53946 * 86.29090 * 138.01986 * 16 14 13 18 18 N 1.47587 * 113.76657 * 283.65658 * 14 13 12 19 19 C 1.36930 * 134.49422 * 40.94857 * 18 14 13 20 20 H 1.07998 * 120.00128 * 0.02562 * 19 18 14 21 21 C 1.38810 * 119.99960 * 180.02562 * 19 18 14 22 22 N 1.31619 * 120.00366 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00121 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47070 * 89.99863 * 23 21 19 25 25 H 1.48495 * 109.47025 * 209.99634 * 23 21 19 26 26 H 1.48499 * 109.47016 * 330.00034 * 23 21 19 27 27 H 1.08997 * 109.46867 * 60.00161 * 1 2 3 28 28 H 1.08994 * 109.47347 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46824 * 300.00290 * 1 2 3 30 30 H 1.08996 * 109.47672 * 239.99695 * 2 1 3 31 31 H 1.09003 * 109.47262 * 120.00033 * 2 1 3 32 32 H 1.09000 * 109.50617 * 297.54477 * 4 3 2 33 33 H 1.09006 * 109.50062 * 57.62591 * 4 3 2 34 34 H 1.09005 * 109.50006 * 176.78458 * 5 4 3 35 35 H 1.08992 * 109.50820 * 296.87206 * 5 4 3 36 36 H 1.09006 * 109.46811 * 298.68522 * 7 6 5 37 37 H 1.09003 * 109.54838 * 178.56005 * 7 6 5 38 38 H 0.97003 * 119.99522 * 359.97438 * 12 10 8 39 39 H 1.08997 * 109.46928 * 60.00304 * 13 12 10 40 40 H 1.08999 * 109.47641 * 299.99886 * 13 12 10 41 41 H 1.08998 * 113.74001 * 252.36800 * 16 14 13 42 42 H 1.09006 * 113.74000 * 23.67660 * 16 14 13 43 43 H 1.08992 * 113.77127 * 90.69493 * 17 16 14 44 44 H 1.09006 * 113.76950 * 221.98092 * 17 16 14 45 45 H 0.97005 * 120.00500 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7983 2.0221 -1.3063 5 6 2.2671 3.4782 -1.2439 6 8 3.6414 3.5147 -0.8498 7 6 3.8941 2.9029 0.4180 8 6 3.4406 1.4414 0.3728 9 1 4.0323 0.8994 -0.3649 10 6 3.6302 0.8135 1.7296 11 8 2.7235 0.8247 2.5350 12 7 4.8073 0.2395 2.0480 13 6 4.9917 -0.3704 3.3672 14 6 6.4057 -0.9460 3.4697 15 1 7.1810 -0.2087 3.2619 16 6 6.6522 -1.7612 4.7521 17 6 7.3969 -2.7638 3.8520 18 7 6.5843 -2.2180 2.7429 19 6 6.1648 -2.6978 1.5310 20 1 5.5595 -2.0789 0.8853 21 6 6.5175 -3.9798 1.1323 22 7 7.2556 -4.7340 1.9189 23 14 5.9446 -4.6348 -0.5207 24 1 6.9513 -4.3024 -1.5607 25 1 5.7841 -6.1088 -0.4404 26 1 4.6432 -4.0136 -0.8751 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.3637 1.4900 -2.0713 33 1 0.7365 1.9911 -1.5510 34 1 2.1578 3.9381 -2.2261 35 1 1.6649 4.0237 -0.5175 36 1 3.3403 3.4321 1.1936 37 1 4.9609 2.9465 0.6378 38 1 5.5324 0.2302 1.4037 39 1 4.2636 -1.1702 3.5026 40 1 4.8496 0.3850 4.1399 41 1 7.2951 -1.2587 5.4748 42 1 5.7426 -2.1635 5.1981 43 1 8.4635 -2.5605 3.7566 44 1 7.1820 -3.8069 4.0845 45 1 7.5024 -5.6298 1.6402 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038437844.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:19 Heat of formation + Delta-G solvation = -14.753367 kcal Electronic energy + Delta-G solvation = -25475.293980 eV Core-core repulsion = 21916.023486 eV Total energy + Delta-G solvation = -3559.270494 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.46669 -38.74599 -37.80925 -36.09849 -34.05083 -32.26646 -31.81521 -30.96031 -28.13907 -27.76160 -26.62771 -24.75983 -23.40529 -22.35196 -22.06128 -20.94688 -19.95312 -19.11590 -17.50465 -16.65937 -16.62311 -16.33819 -15.78172 -15.27804 -15.06342 -14.95484 -14.55546 -14.38743 -14.15168 -13.89727 -13.47940 -13.45532 -12.95043 -12.79536 -12.33097 -12.03552 -11.89984 -11.74629 -11.52801 -11.46415 -11.15606 -11.06421 -10.90368 -10.77129 -10.67622 -10.59689 -10.09032 -9.95930 -9.79632 -9.59859 -9.27671 -8.84217 -8.62528 -8.47394 -6.93462 -5.80747 -3.13035 2.79043 3.24341 3.33383 3.38015 3.40651 3.56401 3.87596 4.38419 4.65655 4.77805 4.80131 4.92444 5.02600 5.04602 5.14129 5.22771 5.35621 5.36346 5.38491 5.48199 5.53185 5.58368 5.60071 5.67420 5.75041 5.84356 5.87917 6.02467 6.05131 6.22290 6.27538 6.37354 6.58605 6.67693 6.74562 6.84562 6.85935 6.90840 7.20310 7.37158 7.54533 7.84055 7.93466 8.50580 8.99199 9.66744 10.55497 11.36090 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014417 B = 0.004802 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.736254 B = 5830.096840 C = 6713.304061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.045 3.955 3 N -0.513 5.513 4 C 0.016 3.984 5 C 0.062 3.938 6 O -0.380 6.380 7 C 0.079 3.921 8 C 0.030 3.970 9 H 0.069 0.931 10 C 0.516 3.484 11 O -0.527 6.527 12 N -0.713 5.713 13 C 0.125 3.875 14 C 0.125 3.875 15 H 0.050 0.950 16 C -0.155 4.155 17 C 0.158 3.842 18 N -0.603 5.603 19 C -0.219 4.219 20 H 0.077 0.923 21 C -0.006 4.006 22 N -0.918 5.918 23 Si 0.905 3.095 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.283 1.283 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.034 0.966 31 H 0.085 0.915 32 H 0.044 0.956 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.104 0.896 38 H 0.402 0.598 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.027 0.973 44 H 0.073 0.927 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.817 13.952 -3.050 16.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.082 4.082 3 N -0.239 5.239 4 C -0.112 4.112 5 C -0.015 4.015 6 O -0.298 6.298 7 C 0.002 3.998 8 C -0.083 4.083 9 H 0.087 0.913 10 C 0.300 3.700 11 O -0.403 6.403 12 N -0.364 5.364 13 C 0.000 4.000 14 C 0.018 3.982 15 H 0.067 0.933 16 C -0.194 4.194 17 C 0.033 3.967 18 N -0.329 5.329 19 C -0.346 4.346 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.565 5.565 23 Si 0.736 3.264 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.208 1.208 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.122 0.878 38 H 0.237 0.763 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.045 0.955 44 H 0.091 0.909 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.626 14.030 -2.468 16.653 hybrid contribution 0.464 -1.162 -1.865 2.246 sum -8.162 12.868 -4.333 15.842 Atomic orbital electron populations 1.21689 0.94434 1.01520 1.02099 1.22202 0.96670 0.87690 1.01630 1.62030 1.14737 1.18831 1.28314 1.22883 1.02358 0.95889 0.90074 1.22704 0.82743 0.95135 1.00929 1.88002 1.26167 1.78792 1.36844 1.22528 1.01602 0.89367 0.86339 1.22315 0.91177 0.98806 0.95960 0.91285 1.20039 0.82752 0.78839 0.88357 1.90686 1.40877 1.58206 1.50558 1.46033 1.14817 1.57398 1.18111 1.21758 0.98843 0.96524 0.82840 1.22512 0.92975 0.90591 0.92141 0.93282 1.23757 1.01012 0.99088 0.95563 1.22256 0.92809 0.97720 0.83874 1.46133 1.58716 1.09930 1.18141 1.18892 1.26079 0.97051 0.92596 0.90545 1.24743 1.00256 0.96849 0.98433 1.69810 1.40855 1.09473 1.36388 0.86228 0.78103 0.78379 0.83690 1.21654 1.21568 1.20823 0.93157 0.92260 0.91598 0.94759 0.89697 0.93779 0.89060 0.88313 0.92021 0.91437 0.87829 0.76317 0.91072 0.92127 0.92749 0.90505 0.95499 0.90861 0.93661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.96 37.16 0.37 -1.30 16 2 C 0.05 0.65 5.36 -3.82 -0.02 0.63 16 3 N -0.51 -7.00 4.23 -227.73 -0.96 -7.97 16 4 C 0.02 0.17 5.47 -3.71 -0.02 0.15 16 5 C 0.06 0.62 7.01 37.21 0.26 0.88 16 6 O -0.38 -4.66 10.82 -35.23 -0.38 -5.04 16 7 C 0.08 0.97 6.28 37.20 0.23 1.20 16 8 C 0.03 0.42 2.37 -68.76 -0.16 0.25 16 9 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 10 C 0.52 8.52 5.74 -10.98 -0.06 8.46 16 11 O -0.53 -10.31 15.59 5.55 0.09 -10.22 16 12 N -0.71 -11.68 5.35 -60.29 -0.32 -12.01 16 13 C 0.12 2.19 5.54 -4.04 -0.02 2.17 16 14 C 0.13 2.34 4.32 -66.86 -0.29 2.05 16 15 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 16 C -0.16 -2.77 7.86 -25.79 -0.20 -2.97 16 17 C 0.16 3.57 7.53 -2.78 -0.02 3.55 16 18 N -0.60 -14.36 3.59 -169.59 -0.61 -14.97 16 19 C -0.22 -5.76 10.51 -15.06 -0.16 -5.92 16 20 H 0.08 1.93 7.49 -52.49 -0.39 1.54 16 21 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 22 N -0.92 -26.64 11.41 55.49 0.63 -26.01 16 23 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H 0.05 0.51 6.73 -51.93 -0.35 0.16 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.03 0.48 8.05 -51.93 -0.42 0.06 16 31 H 0.08 1.46 5.96 -51.93 -0.31 1.15 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.84 6.63 -51.93 -0.34 0.49 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.40 6.31 8.35 -40.82 -0.34 5.97 16 39 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 1.84 7.18 -51.93 -0.37 1.47 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 357.96 15.07 5.39 5.39 Total: -1.00 -31.56 357.96 -8.96 -40.51 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -7.58 Total: 4.63 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -0.19 Total: 8.89 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -1.26 Total: -60.95 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.29 Total: -15.26 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.56 -8.96 -40.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038437844.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.761 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds