Wall clock time and date at job start Tue Mar 31 2020 03:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46903 * 109.47458 * 2 1 4 4 C 1.47019 * 110.99898 * 287.87122 * 3 2 1 5 5 C 1.53096 * 109.25682 * 177.60297 * 4 3 2 6 6 O 1.43011 * 109.25855 * 56.85323 * 5 4 3 7 7 C 1.43023 * 113.77553 * 301.35444 * 6 5 4 8 8 C 1.47008 * 111.00445 * 164.23690 * 3 2 1 9 9 H 1.09000 * 109.50972 * 62.41163 * 8 3 2 10 10 C 1.50702 * 109.50748 * 302.33042 * 8 3 2 11 11 O 1.21284 * 119.99668 * 331.99624 * 10 8 3 12 12 N 1.34778 * 120.00464 * 152.00144 * 10 8 3 13 13 C 1.46496 * 119.99936 * 179.97438 * 12 10 8 14 14 C 1.53005 * 109.46840 * 179.97438 * 13 12 10 15 15 H 1.08997 * 112.96375 * 55.33120 * 14 13 12 16 16 C 1.53946 * 113.76938 * 187.01401 * 14 13 12 17 17 C 1.53946 * 86.29090 * 138.01986 * 16 14 13 18 18 N 1.47587 * 113.76657 * 283.65658 * 14 13 12 19 19 C 1.36930 * 134.49422 * 40.94857 * 18 14 13 20 20 H 1.07998 * 120.00128 * 0.02562 * 19 18 14 21 21 C 1.38810 * 119.99960 * 180.02562 * 19 18 14 22 22 N 1.31619 * 120.00366 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00121 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47070 * 89.99863 * 23 21 19 25 25 H 1.48495 * 109.47025 * 209.99634 * 23 21 19 26 26 H 1.48499 * 109.47016 * 330.00034 * 23 21 19 27 27 H 1.08997 * 109.46867 * 60.00161 * 1 2 3 28 28 H 1.08994 * 109.47347 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46824 * 300.00290 * 1 2 3 30 30 H 1.08996 * 109.47672 * 239.99695 * 2 1 3 31 31 H 1.09003 * 109.47262 * 120.00033 * 2 1 3 32 32 H 1.09000 * 109.50617 * 297.54477 * 4 3 2 33 33 H 1.09006 * 109.50062 * 57.62591 * 4 3 2 34 34 H 1.09005 * 109.50006 * 176.78458 * 5 4 3 35 35 H 1.08992 * 109.50820 * 296.87206 * 5 4 3 36 36 H 1.09006 * 109.46811 * 298.68522 * 7 6 5 37 37 H 1.09003 * 109.54838 * 178.56005 * 7 6 5 38 38 H 0.97003 * 119.99522 * 359.97438 * 12 10 8 39 39 H 1.08997 * 109.46928 * 60.00304 * 13 12 10 40 40 H 1.08999 * 109.47641 * 299.99886 * 13 12 10 41 41 H 1.08998 * 113.74001 * 252.36800 * 16 14 13 42 42 H 1.09006 * 113.74000 * 23.67660 * 16 14 13 43 43 H 1.08992 * 113.77127 * 90.69493 * 17 16 14 44 44 H 1.09006 * 113.76950 * 221.98092 * 17 16 14 45 45 H 0.97005 * 120.00500 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7983 2.0221 -1.3063 5 6 2.2671 3.4782 -1.2439 6 8 3.6414 3.5147 -0.8498 7 6 3.8941 2.9029 0.4180 8 6 3.4406 1.4414 0.3728 9 1 4.0323 0.8994 -0.3649 10 6 3.6302 0.8135 1.7296 11 8 2.7235 0.8247 2.5350 12 7 4.8073 0.2395 2.0480 13 6 4.9917 -0.3704 3.3672 14 6 6.4057 -0.9460 3.4697 15 1 7.1810 -0.2087 3.2619 16 6 6.6522 -1.7612 4.7521 17 6 7.3969 -2.7638 3.8520 18 7 6.5843 -2.2180 2.7429 19 6 6.1648 -2.6978 1.5310 20 1 5.5595 -2.0789 0.8853 21 6 6.5175 -3.9798 1.1323 22 7 7.2556 -4.7340 1.9189 23 14 5.9446 -4.6348 -0.5207 24 1 6.9513 -4.3024 -1.5607 25 1 5.7841 -6.1088 -0.4404 26 1 4.6432 -4.0136 -0.8751 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.3637 1.4900 -2.0713 33 1 0.7365 1.9911 -1.5510 34 1 2.1578 3.9381 -2.2261 35 1 1.6649 4.0237 -0.5175 36 1 3.3403 3.4321 1.1936 37 1 4.9609 2.9465 0.6378 38 1 5.5324 0.2302 1.4037 39 1 4.2636 -1.1702 3.5026 40 1 4.8496 0.3850 4.1399 41 1 7.2951 -1.2587 5.4748 42 1 5.7426 -2.1635 5.1981 43 1 8.4635 -2.5605 3.7566 44 1 7.1820 -3.8069 4.0845 45 1 7.5024 -5.6298 1.6402 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038437844.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:18 Heat of formation + Delta-G solvation = -38.392237 kcal Electronic energy + Delta-G solvation = -25476.319038 eV Core-core repulsion = 21916.023486 eV Total energy + Delta-G solvation = -3560.295552 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.61357 -40.07101 -39.28914 -37.11699 -35.49722 -34.22561 -32.90100 -31.89244 -29.93093 -29.29290 -27.62940 -25.82696 -25.29755 -23.76869 -23.12634 -22.11154 -21.23441 -20.73498 -18.95273 -18.16204 -17.73784 -17.48211 -17.03724 -16.89952 -16.18055 -16.09434 -15.89618 -15.68483 -15.58797 -15.22540 -14.93740 -14.74568 -14.37660 -13.98396 -13.59543 -13.33592 -13.18526 -12.98031 -12.93338 -12.77603 -12.69224 -12.58141 -12.42456 -12.34455 -11.93851 -11.86646 -11.61944 -11.52777 -11.35412 -10.98848 -10.84376 -10.58751 -10.03941 -9.51487 -8.88634 -7.87939 -5.18823 1.40681 1.41545 1.48896 1.49892 2.02442 2.44851 2.59527 2.89715 3.31899 3.37943 3.65967 3.68333 3.87741 3.89688 3.98200 4.01630 4.13847 4.20390 4.31409 4.35305 4.37540 4.47375 4.56307 4.61647 4.63709 4.71075 4.71942 4.87787 4.89529 4.91618 4.99676 5.06333 5.10267 5.24590 5.32928 5.42518 5.60662 5.71106 5.75215 5.87880 5.97105 6.02049 6.52351 6.94092 7.19032 7.64640 8.60066 9.29157 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014417 B = 0.004802 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.736254 B = 5830.096840 C = 6713.304061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.046 3.954 3 N -0.523 5.523 4 C 0.016 3.984 5 C 0.059 3.941 6 O -0.389 6.389 7 C 0.085 3.915 8 C 0.033 3.967 9 H 0.068 0.932 10 C 0.519 3.481 11 O -0.560 6.560 12 N -0.711 5.711 13 C 0.135 3.865 14 C 0.132 3.868 15 H 0.073 0.927 16 C -0.130 4.130 17 C 0.149 3.851 18 N -0.630 5.630 19 C -0.209 4.209 20 H 0.083 0.917 21 C -0.070 4.070 22 N -0.953 5.953 23 Si 0.963 3.037 24 H -0.286 1.286 25 H -0.299 1.299 26 H -0.274 1.274 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.034 0.966 31 H 0.049 0.951 32 H 0.042 0.958 33 H 0.111 0.889 34 H 0.127 0.873 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.119 0.881 38 H 0.407 0.593 39 H 0.040 0.960 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.023 0.977 44 H 0.037 0.963 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.488 16.300 -3.928 18.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.082 4.082 3 N -0.250 5.250 4 C -0.112 4.112 5 C -0.017 4.017 6 O -0.308 6.308 7 C 0.008 3.992 8 C -0.079 4.079 9 H 0.086 0.914 10 C 0.304 3.696 11 O -0.438 6.438 12 N -0.361 5.361 13 C 0.010 3.990 14 C 0.026 3.974 15 H 0.091 0.909 16 C -0.169 4.169 17 C 0.024 3.976 18 N -0.356 5.356 19 C -0.338 4.338 20 H 0.101 0.899 21 C -0.262 4.262 22 N -0.603 5.603 23 Si 0.792 3.208 24 H -0.213 1.213 25 H -0.226 1.226 26 H -0.199 1.199 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.129 0.871 34 H 0.145 0.855 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.137 0.863 38 H 0.242 0.758 39 H 0.058 0.942 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.095 0.905 43 H 0.041 0.959 44 H 0.056 0.944 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.301 16.426 -3.354 19.172 hybrid contribution 0.643 -1.824 -1.559 2.484 sum -8.657 14.603 -4.913 17.673 Atomic orbital electron populations 1.21634 0.92635 1.02087 1.02634 1.22145 0.98201 0.88041 0.99787 1.62083 1.14334 1.18348 1.30211 1.23016 1.03642 0.96103 0.88412 1.22923 0.81655 0.94633 1.02530 1.87998 1.27596 1.78564 1.36594 1.22512 1.02428 0.87825 0.86471 1.22310 0.91746 0.99829 0.94005 0.91425 1.20458 0.82001 0.78103 0.89007 1.90666 1.41815 1.59504 1.51833 1.46009 1.15150 1.57121 1.17869 1.21541 0.97122 0.96205 0.84134 1.22689 0.93968 0.89395 0.91313 0.90937 1.23551 1.00802 0.97018 0.95505 1.22231 0.93013 0.97038 0.85314 1.46481 1.58887 1.12531 1.17729 1.19243 1.24473 0.96842 0.93260 0.89934 1.25464 1.01591 0.97657 1.01527 1.69989 1.42993 1.09386 1.37924 0.85306 0.77935 0.77082 0.80434 1.21342 1.22559 1.19938 0.90850 0.91754 0.92698 0.94774 0.93285 0.93949 0.87127 0.85483 0.91702 0.91879 0.86327 0.75775 0.94197 0.89960 0.88668 0.90489 0.95866 0.94422 0.94615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 9.96 71.98 0.72 -2.27 16 2 C 0.05 1.29 5.36 86.30 0.46 1.75 16 3 N -0.52 -13.58 4.23 -874.40 -3.70 -17.28 16 4 C 0.02 0.30 5.47 86.31 0.47 0.77 16 5 C 0.06 1.00 7.01 72.01 0.50 1.50 16 6 O -0.39 -8.55 10.82 -148.98 -1.61 -10.17 16 7 C 0.09 1.92 6.28 72.01 0.45 2.37 16 8 C 0.03 0.90 2.37 44.18 0.10 1.00 16 9 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 10 C 0.52 16.79 5.74 87.66 0.50 17.29 16 11 O -0.56 -21.84 15.59 -3.04 -0.05 -21.89 16 12 N -0.71 -22.53 5.35 -463.06 -2.48 -25.00 16 13 C 0.13 4.55 5.54 86.38 0.48 5.03 16 14 C 0.13 4.69 4.32 45.09 0.19 4.88 16 15 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 16 C -0.13 -4.38 7.86 31.25 0.25 -4.14 16 17 C 0.15 6.75 7.53 86.41 0.65 7.40 16 18 N -0.63 -29.86 3.59 -690.48 -2.48 -32.34 16 19 C -0.21 -11.07 10.51 84.03 0.88 -10.19 16 20 H 0.08 4.14 7.49 -2.91 -0.02 4.12 16 21 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 22 N -0.95 -56.96 11.41 21.65 0.25 -56.71 16 23 Si 0.96 45.55 29.55 68.60 2.03 47.58 16 24 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 25 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 26 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 27 H 0.07 1.30 6.73 -2.39 -0.02 1.28 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.03 0.93 8.05 -2.39 -0.02 0.91 16 31 H 0.05 1.72 5.96 -2.39 -0.01 1.70 16 32 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.11 1.67 6.63 -2.38 -0.02 1.66 16 34 H 0.13 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.41 12.19 8.35 -92.71 -0.77 11.41 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.08 2.61 8.10 -2.38 -0.02 2.59 16 43 H 0.02 1.06 8.14 -2.39 -0.02 1.05 16 44 H 0.04 1.96 7.18 -2.38 -0.02 1.94 16 45 H 0.24 14.40 8.31 -92.70 -0.77 13.63 16 Total: -1.00 -69.55 357.96 -1.70 -71.26 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.20 Total: 22.59 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: 6.14 Total: 21.97 kcal Atomic # 7 Polarization: -122.93 SS G_CDS: -8.41 Total: -131.34 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -1.66 Total: -32.06 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -69.55 -1.70 -71.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038437844.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.867 kcal (2) G-P(sol) polarization free energy of solvation -69.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds