Wall clock time and date at job start Tue Mar 31 2020 03:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46898 * 109.46965 * 2 1 4 4 C 1.47007 * 111.00364 * 72.14667 * 3 2 1 5 5 C 1.53107 * 109.25937 * 182.39652 * 4 3 2 6 6 O 1.43013 * 109.25511 * 303.14798 * 5 4 3 7 7 C 1.43013 * 113.74011 * 58.66671 * 6 5 4 8 8 C 1.47018 * 110.99778 * 195.78349 * 3 2 1 9 9 H 1.08999 * 109.50346 * 297.57629 * 8 3 2 10 10 C 1.50692 * 109.51030 * 57.66970 * 8 3 2 11 11 O 1.21285 * 119.99964 * 27.98821 * 10 8 3 12 12 N 1.34782 * 120.00246 * 207.71145 * 10 8 3 13 13 C 1.46494 * 120.00193 * 180.27058 * 12 10 8 14 14 C 1.53005 * 109.47144 * 179.97438 * 13 12 10 15 15 H 1.09002 * 112.74067 * 304.67447 * 14 13 12 16 16 C 1.53494 * 113.46873 * 173.92442 * 14 13 12 17 17 C 1.53609 * 83.30791 * 219.17736 * 16 14 13 18 18 N 1.47072 * 88.00531 * 26.02257 * 17 16 14 19 19 C 1.36927 * 136.05731 * 152.96841 * 18 17 16 20 20 H 1.08001 * 120.00150 * 179.97438 * 19 18 17 21 21 C 1.38817 * 120.00364 * 359.95022 * 19 18 17 22 22 N 1.31614 * 119.99793 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00276 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46911 * 60.00035 * 23 21 19 25 25 H 1.48501 * 109.47117 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.46846 * 300.00245 * 23 21 19 27 27 H 1.08994 * 109.47480 * 300.00257 * 1 2 3 28 28 H 1.08995 * 109.46923 * 60.00798 * 1 2 3 29 29 H 1.09008 * 109.46950 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47480 * 239.99743 * 2 1 3 31 31 H 1.09009 * 109.47043 * 119.99278 * 2 1 3 32 32 H 1.09002 * 109.50703 * 302.32265 * 4 3 2 33 33 H 1.08997 * 109.51290 * 62.45617 * 4 3 2 34 34 H 1.08993 * 109.50589 * 63.08174 * 5 4 3 35 35 H 1.08998 * 109.50517 * 183.17420 * 5 4 3 36 36 H 1.09005 * 109.50995 * 181.39306 * 7 6 5 37 37 H 1.08998 * 109.50306 * 61.26889 * 7 6 5 38 38 H 0.97003 * 119.99570 * 0.27347 * 12 10 8 39 39 H 1.08999 * 109.47639 * 300.00242 * 13 12 10 40 40 H 1.09003 * 109.46855 * 60.00508 * 13 12 10 41 41 H 1.09001 * 114.20734 * 332.74349 * 16 14 13 42 42 H 1.08998 * 114.20574 * 105.56950 * 16 14 13 43 43 H 1.09000 * 113.41080 * 271.24256 * 17 16 14 44 44 H 1.08993 * 113.56557 * 140.82605 * 17 16 14 45 45 H 0.97000 * 120.00335 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7985 2.0220 1.3063 5 6 2.2673 3.4782 1.2439 6 8 3.6415 3.5148 0.8493 7 6 3.8928 2.9034 -0.4189 8 6 3.4405 1.4414 -0.3733 9 1 4.0323 0.8995 0.3643 10 6 3.6296 0.8136 -1.7301 11 8 2.7226 0.8247 -2.5352 12 7 4.8086 0.2448 -2.0510 13 6 4.9945 -0.3603 -3.3722 14 6 6.4108 -0.9294 -3.4778 15 1 7.1802 -0.1864 -3.2677 16 6 6.6583 -1.7166 -4.7721 17 6 7.4478 -2.6494 -3.8415 18 7 6.5932 -2.1870 -2.7375 19 6 6.1591 -2.7010 -1.5448 20 1 5.5127 -2.1155 -0.9078 21 6 6.5495 -3.9747 -1.1546 22 7 7.3372 -4.6882 -1.9309 23 14 5.9579 -4.6755 0.4727 24 1 4.4743 -4.7387 0.4743 25 1 6.5113 -6.0416 0.6538 26 1 6.4173 -3.8034 1.5834 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 0.7368 1.9918 1.5510 33 1 2.3642 1.4900 2.0712 34 1 1.6653 4.0235 0.5170 35 1 2.1576 3.9383 2.2259 36 1 4.9594 2.9476 -0.6393 37 1 3.3381 3.4320 -1.1940 38 1 5.5341 0.2360 -1.4071 39 1 4.2691 -1.1621 -3.5100 40 1 4.8494 0.3973 -4.1424 41 1 5.7623 -2.1661 -5.2001 42 1 7.2715 -1.1913 -5.5043 43 1 8.4940 -2.3650 -3.7290 44 1 7.3214 -3.7066 -4.0747 45 1 7.6098 -5.5784 -1.6585 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038437845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:20 Heat of formation + Delta-G solvation = -35.043864 kcal Electronic energy + Delta-G solvation = -25476.705154 eV Core-core repulsion = 21916.554798 eV Total energy + Delta-G solvation = -3560.150356 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.61927 -40.19795 -39.37464 -37.11832 -35.49821 -34.26311 -32.90003 -31.89025 -29.98589 -29.26122 -27.62134 -25.80475 -25.40107 -23.64718 -23.12031 -22.10459 -21.27015 -20.81385 -18.94265 -18.18088 -17.73575 -17.48139 -17.04387 -16.89233 -16.17888 -16.09420 -15.89973 -15.67996 -15.59302 -15.22480 -14.91150 -14.74783 -14.37451 -13.98253 -13.60535 -13.37668 -13.19042 -12.97439 -12.92934 -12.77599 -12.71509 -12.60616 -12.42374 -12.36722 -11.93499 -11.86778 -11.65679 -11.61076 -11.22823 -10.95083 -10.85152 -10.56913 -10.03543 -9.51127 -8.89907 -7.88812 -5.20089 1.40883 1.42899 1.48613 1.50160 2.02934 2.44606 2.59852 2.90077 3.33196 3.42380 3.66223 3.68355 3.87774 3.89455 3.94229 4.00628 4.15046 4.20644 4.31626 4.34696 4.37581 4.47613 4.56482 4.61760 4.64297 4.69236 4.71780 4.87931 4.89606 4.91781 4.99979 5.05664 5.09541 5.24844 5.31799 5.42833 5.58039 5.71315 5.74445 5.88269 5.96357 6.01987 6.52550 6.92346 7.19168 7.63049 8.63291 9.28632 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014393 B = 0.004795 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.919475 B = 5837.825576 C = 6726.135535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.046 3.954 3 N -0.523 5.523 4 C 0.016 3.984 5 C 0.059 3.941 6 O -0.389 6.389 7 C 0.085 3.915 8 C 0.034 3.966 9 H 0.068 0.932 10 C 0.519 3.481 11 O -0.560 6.560 12 N -0.711 5.711 13 C 0.133 3.867 14 C 0.133 3.867 15 H 0.071 0.929 16 C -0.134 4.134 17 C 0.143 3.857 18 N -0.629 5.629 19 C -0.206 4.206 20 H 0.084 0.916 21 C -0.069 4.069 22 N -0.952 5.952 23 Si 0.964 3.036 24 H -0.284 1.284 25 H -0.297 1.297 26 H -0.275 1.275 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.035 0.965 32 H 0.111 0.889 33 H 0.043 0.957 34 H 0.064 0.936 35 H 0.127 0.873 36 H 0.118 0.882 37 H 0.063 0.937 38 H 0.407 0.593 39 H 0.039 0.961 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.101 0.899 43 H 0.023 0.977 44 H 0.035 0.965 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.628 16.149 4.097 18.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.082 4.082 3 N -0.250 5.250 4 C -0.112 4.112 5 C -0.018 4.018 6 O -0.307 6.307 7 C 0.008 3.992 8 C -0.079 4.079 9 H 0.086 0.914 10 C 0.304 3.696 11 O -0.438 6.438 12 N -0.362 5.362 13 C 0.008 3.992 14 C 0.027 3.973 15 H 0.089 0.911 16 C -0.173 4.173 17 C 0.017 3.983 18 N -0.355 5.355 19 C -0.335 4.335 20 H 0.102 0.898 21 C -0.262 4.262 22 N -0.602 5.602 23 Si 0.793 3.207 24 H -0.210 1.210 25 H -0.223 1.223 26 H -0.201 1.201 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.129 0.871 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.145 0.855 36 H 0.136 0.864 37 H 0.081 0.919 38 H 0.242 0.758 39 H 0.058 0.942 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.119 0.881 43 H 0.041 0.959 44 H 0.053 0.947 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.432 16.258 3.546 19.128 hybrid contribution 0.639 -1.811 1.501 2.438 sum -8.793 14.447 5.047 17.649 Atomic orbital electron populations 1.21635 0.92666 1.02083 1.02616 1.22149 0.98183 0.88035 0.99830 1.62080 1.14338 1.18385 1.30200 1.23013 1.03641 0.96085 0.88421 1.22928 0.81653 0.94666 1.02523 1.88000 1.27616 1.78586 1.36542 1.22507 1.02416 0.87853 0.86463 1.22310 0.91758 0.99798 0.94009 0.91388 1.20463 0.82015 0.78085 0.89023 1.90667 1.41863 1.59413 1.51896 1.46018 1.14972 1.57421 1.17743 1.21592 0.97284 0.96268 0.84044 1.22574 0.93897 0.89560 0.91250 0.91123 1.23494 1.00704 0.97760 0.95343 1.22069 0.92757 0.97673 0.85822 1.45976 1.55255 1.14318 1.19957 1.19102 1.22519 0.97477 0.94369 0.89839 1.25493 1.01108 0.97874 1.01702 1.69990 1.40343 1.11178 1.38679 0.85361 0.77585 0.77319 0.80394 1.21011 1.22314 1.20122 0.90858 0.92734 0.91748 0.93276 0.94664 0.87127 0.93911 0.91727 0.85479 0.86377 0.91890 0.75788 0.94223 0.90085 0.90375 0.88116 0.95931 0.94667 0.94567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 9.96 71.98 0.72 -2.25 16 2 C 0.05 1.27 5.36 86.30 0.46 1.73 16 3 N -0.52 -13.54 4.23 -874.40 -3.70 -17.24 16 4 C 0.02 0.30 5.46 86.32 0.47 0.77 16 5 C 0.06 0.99 7.01 72.02 0.50 1.50 16 6 O -0.39 -8.57 10.83 -148.98 -1.61 -10.18 16 7 C 0.09 1.92 6.27 72.02 0.45 2.37 16 8 C 0.03 0.90 2.38 44.18 0.10 1.00 16 9 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 10 C 0.52 16.80 5.74 87.65 0.50 17.30 16 11 O -0.56 -21.88 15.59 -3.05 -0.05 -21.92 16 12 N -0.71 -22.60 5.41 -463.06 -2.50 -25.11 16 13 C 0.13 4.51 5.52 86.38 0.48 4.99 16 14 C 0.13 4.75 4.10 41.79 0.17 4.92 16 15 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 16 C -0.13 -4.52 8.04 30.97 0.25 -4.27 16 17 C 0.14 6.43 7.40 83.22 0.62 7.04 16 18 N -0.63 -29.90 3.65 -713.22 -2.61 -32.51 16 19 C -0.21 -10.91 10.55 84.04 0.89 -10.03 16 20 H 0.08 4.19 7.68 -2.91 -0.02 4.17 16 21 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 22 N -0.95 -56.95 11.51 21.65 0.25 -56.70 16 23 Si 0.96 45.38 29.55 68.60 2.03 47.41 16 24 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 27 H 0.07 1.29 6.73 -2.39 -0.02 1.27 16 28 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.05 1.71 5.96 -2.39 -0.01 1.69 16 31 H 0.04 0.95 8.05 -2.38 -0.02 0.93 16 32 H 0.11 1.66 6.63 -2.39 -0.02 1.65 16 33 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.12 2.25 8.14 -2.38 -0.02 2.24 16 37 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.41 12.25 8.47 -92.71 -0.79 11.47 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.08 2.67 8.12 -2.39 -0.02 2.65 16 42 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.03 1.83 7.12 -2.39 -0.02 1.82 16 45 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -69.50 358.31 -1.92 -71.42 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.19 Total: 23.13 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: 6.08 Total: 21.70 kcal Atomic # 7 Polarization: -122.99 SS G_CDS: -8.56 Total: -131.55 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -1.66 Total: -32.10 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -69.50 -1.92 -71.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038437845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.373 kcal (2) G-P(sol) polarization free energy of solvation -69.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds