Wall clock time and date at job start Tue Mar 31 2020 03:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.46769 * 2 1 4 4 C 1.47013 * 110.99922 * 66.05312 * 3 2 1 5 5 C 1.53099 * 109.25699 * 182.39006 * 4 3 2 6 6 O 1.43008 * 109.25820 * 303.14724 * 5 4 3 7 7 C 1.43015 * 113.73985 * 58.67227 * 6 5 4 8 8 H 1.08998 * 109.50811 * 61.26441 * 7 6 5 9 9 C 1.50696 * 109.50667 * 181.34985 * 7 6 5 10 10 O 1.21283 * 120.00314 * 5.00216 * 9 7 6 11 11 N 1.34786 * 119.99888 * 184.99743 * 9 7 6 12 12 C 1.46494 * 119.99809 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.46925 * 180.02562 * 12 11 9 14 14 H 1.08996 * 112.96891 * 306.67566 * 13 12 11 15 15 C 1.53946 * 113.76776 * 175.00182 * 13 12 11 16 16 C 1.53952 * 86.29111 * 222.09156 * 15 13 12 17 17 N 1.47576 * 113.77079 * 78.50701 * 13 12 11 18 18 C 1.36937 * 134.49170 * 318.94149 * 17 13 12 19 19 H 1.07998 * 120.00272 * 0.02562 * 18 17 13 20 20 C 1.38817 * 120.00135 * 179.97438 * 18 17 13 21 21 N 1.31616 * 120.00045 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99982 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47281 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47513 * 120.00137 * 22 20 18 25 25 H 1.48507 * 109.46829 * 240.00133 * 22 20 18 26 26 C 1.47016 * 110.99991 * 189.68155 * 3 2 1 27 27 H 1.08992 * 109.47399 * 59.99697 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99524 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00295 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00475 * 2 1 3 32 32 H 1.09004 * 109.50487 * 302.31991 * 4 3 2 33 33 H 1.08999 * 109.51172 * 62.40701 * 4 3 2 34 34 H 1.09005 * 109.50562 * 63.08705 * 5 4 3 35 35 H 1.09002 * 109.50710 * 183.21261 * 5 4 3 36 36 H 0.96996 * 119.99765 * 0.02562 * 11 9 7 37 37 H 1.09000 * 109.47858 * 300.00289 * 12 11 9 38 38 H 1.09004 * 109.47171 * 60.00313 * 12 11 9 39 39 H 1.08998 * 113.74541 * 336.43795 * 15 13 12 40 40 H 1.09000 * 113.74630 * 107.63993 * 15 13 12 41 41 H 1.08998 * 113.76775 * 137.90724 * 16 15 13 42 42 H 1.09002 * 113.76751 * 269.19524 * 16 15 13 43 43 H 0.96997 * 120.00589 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.51068 * 297.54725 * 26 3 2 45 45 H 1.09000 * 109.50502 * 57.67443 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6699 2.0674 1.2543 5 6 2.1453 3.5212 1.1878 6 8 3.5520 3.5463 0.9318 7 6 3.9281 2.8910 -0.2825 8 1 3.4547 3.3909 -1.1275 9 6 5.4257 2.9450 -0.4405 10 8 6.1126 3.4092 0.4447 11 7 6.0020 2.4772 -1.5656 12 6 7.4580 2.5291 -1.7189 13 6 7.8492 1.9401 -3.0757 14 1 7.4415 0.9427 -3.2399 15 6 9.3512 2.0564 -3.3927 16 6 8.9182 2.4458 -4.8178 17 7 7.6413 2.8641 -4.2075 18 6 6.6583 3.7528 -4.5527 19 1 5.7960 3.8790 -3.9148 20 6 6.7706 4.4923 -5.7222 21 7 7.8221 4.3396 -6.4989 22 14 5.4300 5.7050 -6.1927 23 1 4.3635 5.6895 -5.1594 24 1 6.0080 7.0696 -6.2878 25 1 4.8524 5.3195 -7.5054 26 6 3.4708 1.4309 -0.2308 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 0.5889 2.0439 1.3924 33 1 2.1546 1.5632 2.0904 34 1 1.6200 4.0395 0.3855 35 1 1.9392 4.0154 2.1372 36 1 5.4526 2.1061 -2.2736 37 1 7.7926 3.5650 -1.6627 38 1 7.9280 1.9518 -0.9226 39 1 9.8531 2.8587 -2.8519 40 1 9.8859 1.1081 -3.3384 41 1 9.4929 3.2690 -5.2421 42 1 8.8259 1.5975 -5.4961 43 1 7.9005 4.8560 -7.3162 44 1 3.9850 0.9169 0.5814 45 1 3.7044 0.9426 -1.1769 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039045979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:55 Heat of formation + Delta-G solvation = -16.467877 kcal Electronic energy + Delta-G solvation = -24973.515593 eV Core-core repulsion = 21414.170753 eV Total energy + Delta-G solvation = -3559.344840 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.32440 -38.82618 -37.81281 -36.27699 -34.09426 -32.24750 -31.82327 -31.11385 -28.32790 -27.85143 -26.53670 -24.55861 -23.37479 -22.93589 -21.92604 -20.74212 -20.16676 -19.11735 -17.53717 -16.73186 -16.60479 -16.13363 -15.76903 -15.47579 -15.14785 -15.07535 -14.72916 -14.32016 -14.10284 -13.93456 -13.69272 -13.41881 -12.97306 -12.82257 -12.34246 -12.23380 -12.00863 -11.85435 -11.61654 -11.43401 -11.16543 -11.11561 -11.02712 -10.91130 -10.74717 -10.52817 -10.00466 -9.83081 -9.75125 -9.60509 -9.28571 -8.80832 -8.70813 -8.61575 -6.90279 -5.77122 -3.09708 2.80879 3.03027 3.38171 3.43814 3.46052 3.47754 4.06238 4.42684 4.56848 4.64594 4.68273 4.87186 4.89444 5.00487 5.06781 5.13089 5.15392 5.22655 5.32619 5.39743 5.40490 5.52912 5.60730 5.61398 5.63445 5.70044 5.71187 5.90007 5.90613 6.07040 6.30344 6.39352 6.60738 6.61041 6.65371 6.69378 6.82135 6.97913 7.24252 7.40062 7.58982 7.83712 7.97835 8.51102 9.03624 9.70594 10.58377 11.39601 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014632 B = 0.004068 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.144726 B = 6880.605574 C = 7517.611811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.536 5.536 4 C 0.013 3.987 5 C 0.062 3.938 6 O -0.355 6.355 7 C 0.077 3.923 8 H 0.094 0.906 9 C 0.518 3.482 10 O -0.528 6.528 11 N -0.710 5.710 12 C 0.125 3.875 13 C 0.126 3.874 14 H 0.050 0.950 15 C -0.156 4.156 16 C 0.159 3.841 17 N -0.602 5.602 18 C -0.219 4.219 19 H 0.079 0.921 20 C -0.007 4.007 21 N -0.919 5.919 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.031 3.969 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.035 0.965 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.044 0.956 34 H 0.062 0.938 35 H 0.102 0.898 36 H 0.403 0.597 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.026 0.974 43 H 0.252 0.748 44 H 0.049 0.951 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.224 -9.374 12.784 19.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 N -0.261 5.261 4 C -0.115 4.115 5 C -0.016 4.016 6 O -0.273 6.273 7 C 0.016 3.984 8 H 0.112 0.888 9 C 0.302 3.698 10 O -0.404 6.404 11 N -0.362 5.362 12 C 0.000 4.000 13 C 0.018 3.982 14 H 0.067 0.933 15 C -0.195 4.195 16 C 0.034 3.966 17 N -0.328 5.328 18 C -0.347 4.347 19 H 0.097 0.903 20 C -0.203 4.203 21 N -0.566 5.566 22 Si 0.737 3.263 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.218 1.218 26 C -0.097 4.097 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.120 0.880 36 H 0.237 0.763 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.044 0.956 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.962 -8.446 12.960 18.960 hybrid contribution -0.955 -0.127 -0.322 1.015 sum -11.917 -8.573 12.638 19.371 Atomic orbital electron populations 1.21799 0.94565 1.01704 1.02571 1.22113 0.96309 0.88187 1.01177 1.62245 1.12862 1.16496 1.34519 1.22885 1.01858 0.95952 0.90791 1.22739 0.81739 0.94937 1.02150 1.88124 1.22858 1.76596 1.39720 1.21964 0.93464 0.93172 0.89831 0.88820 1.19931 0.88660 0.78570 0.82640 1.90696 1.64253 1.44446 1.41016 1.45874 1.09147 1.62607 1.18553 1.21791 0.78521 1.02161 0.97488 1.22502 0.94308 0.93448 0.87899 0.93305 1.23777 0.94788 1.00124 1.00779 1.22195 0.86446 0.97026 0.90976 1.46079 1.22616 1.42183 1.21971 1.18984 0.98742 1.12719 1.04217 0.90313 1.24755 0.98099 1.00212 0.97264 1.69823 1.28582 1.43755 1.14461 0.86130 0.81033 0.81043 0.78057 1.20492 1.21720 1.21809 1.22656 0.88177 0.96142 1.02744 0.91595 0.92135 0.92725 0.94718 0.90293 0.89208 0.93792 0.91963 0.87986 0.76279 0.90825 0.92102 0.90481 0.92806 0.90816 0.95579 0.93746 0.93280 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.84 37.16 0.37 -0.69 16 2 C 0.05 0.42 5.68 -3.82 -0.02 0.40 16 3 N -0.54 -5.61 4.73 -234.30 -1.11 -6.72 16 4 C 0.01 0.13 5.43 -3.71 -0.02 0.11 16 5 C 0.06 0.67 7.01 37.21 0.26 0.93 16 6 O -0.36 -5.46 10.01 -55.06 -0.55 -6.01 16 7 C 0.08 1.12 3.21 -27.84 -0.09 1.03 16 8 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 9 C 0.52 9.09 7.18 -10.98 -0.08 9.01 16 10 O -0.53 -11.33 16.51 -14.27 -0.24 -11.56 16 11 N -0.71 -11.83 5.49 -60.29 -0.33 -12.16 16 12 C 0.12 2.23 5.54 -4.04 -0.02 2.21 16 13 C 0.13 2.37 4.33 -66.87 -0.29 2.08 16 14 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 15 C -0.16 -2.80 7.86 -25.80 -0.20 -3.01 16 16 C 0.16 3.60 7.52 -2.97 -0.02 3.58 16 17 N -0.60 -14.45 3.57 -170.75 -0.61 -15.06 16 18 C -0.22 -5.82 10.51 -15.06 -0.16 -5.98 16 19 H 0.08 2.01 7.80 -52.49 -0.41 1.60 16 20 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 21 N -0.92 -26.80 11.38 55.49 0.63 -26.17 16 22 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 C 0.03 0.37 4.89 -3.71 -0.02 0.35 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.36 6.51 -51.93 -0.34 0.03 16 30 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16 31 H 0.08 0.65 8.04 -51.93 -0.42 0.23 16 32 H 0.09 0.68 6.37 -51.93 -0.33 0.35 16 33 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.40 6.20 8.36 -40.82 -0.34 5.86 16 37 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 1.87 7.15 -51.93 -0.37 1.50 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.09 0.99 7.97 -51.93 -0.41 0.58 16 LS Contribution 361.51 15.07 5.45 5.45 Total: -1.00 -32.98 361.51 -9.85 -42.82 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -7.67 Total: 2.72 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: -0.39 Total: 9.74 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: -1.42 Total: -60.11 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.79 Total: -17.57 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.98 -9.85 -42.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039045979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.355 kcal (2) G-P(sol) polarization free energy of solvation -32.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds