Wall clock time and date at job start Tue Mar 31 2020 03:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.46769 * 2 1 4 4 C 1.47013 * 110.99922 * 66.05312 * 3 2 1 5 5 C 1.53099 * 109.25699 * 182.39006 * 4 3 2 6 6 O 1.43008 * 109.25820 * 303.14724 * 5 4 3 7 7 C 1.43015 * 113.73985 * 58.67227 * 6 5 4 8 8 H 1.08998 * 109.50811 * 61.26441 * 7 6 5 9 9 C 1.50696 * 109.50667 * 181.34985 * 7 6 5 10 10 O 1.21283 * 120.00314 * 5.00216 * 9 7 6 11 11 N 1.34786 * 119.99888 * 184.99743 * 9 7 6 12 12 C 1.46494 * 119.99809 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.46925 * 180.02562 * 12 11 9 14 14 H 1.08996 * 112.96891 * 306.67566 * 13 12 11 15 15 C 1.53946 * 113.76776 * 175.00182 * 13 12 11 16 16 C 1.53952 * 86.29111 * 222.09156 * 15 13 12 17 17 N 1.47576 * 113.77079 * 78.50701 * 13 12 11 18 18 C 1.36937 * 134.49170 * 318.94149 * 17 13 12 19 19 H 1.07998 * 120.00272 * 0.02562 * 18 17 13 20 20 C 1.38817 * 120.00135 * 179.97438 * 18 17 13 21 21 N 1.31616 * 120.00045 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99982 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47281 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47513 * 120.00137 * 22 20 18 25 25 H 1.48507 * 109.46829 * 240.00133 * 22 20 18 26 26 C 1.47016 * 110.99991 * 189.68155 * 3 2 1 27 27 H 1.08992 * 109.47399 * 59.99697 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99524 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00295 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00475 * 2 1 3 32 32 H 1.09004 * 109.50487 * 302.31991 * 4 3 2 33 33 H 1.08999 * 109.51172 * 62.40701 * 4 3 2 34 34 H 1.09005 * 109.50562 * 63.08705 * 5 4 3 35 35 H 1.09002 * 109.50710 * 183.21261 * 5 4 3 36 36 H 0.96996 * 119.99765 * 0.02562 * 11 9 7 37 37 H 1.09000 * 109.47858 * 300.00289 * 12 11 9 38 38 H 1.09004 * 109.47171 * 60.00313 * 12 11 9 39 39 H 1.08998 * 113.74541 * 336.43795 * 15 13 12 40 40 H 1.09000 * 113.74630 * 107.63993 * 15 13 12 41 41 H 1.08998 * 113.76775 * 137.90724 * 16 15 13 42 42 H 1.09002 * 113.76751 * 269.19524 * 16 15 13 43 43 H 0.96997 * 120.00589 * 179.97438 * 21 20 18 44 44 H 1.09004 * 109.51068 * 297.54725 * 26 3 2 45 45 H 1.09000 * 109.50502 * 57.67443 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6699 2.0674 1.2543 5 6 2.1453 3.5212 1.1878 6 8 3.5520 3.5463 0.9318 7 6 3.9281 2.8910 -0.2825 8 1 3.4547 3.3909 -1.1275 9 6 5.4257 2.9450 -0.4405 10 8 6.1126 3.4092 0.4447 11 7 6.0020 2.4772 -1.5656 12 6 7.4580 2.5291 -1.7189 13 6 7.8492 1.9401 -3.0757 14 1 7.4415 0.9427 -3.2399 15 6 9.3512 2.0564 -3.3927 16 6 8.9182 2.4458 -4.8178 17 7 7.6413 2.8641 -4.2075 18 6 6.6583 3.7528 -4.5527 19 1 5.7960 3.8790 -3.9148 20 6 6.7706 4.4923 -5.7222 21 7 7.8221 4.3396 -6.4989 22 14 5.4300 5.7050 -6.1927 23 1 4.3635 5.6895 -5.1594 24 1 6.0080 7.0696 -6.2878 25 1 4.8524 5.3195 -7.5054 26 6 3.4708 1.4309 -0.2308 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 0.5889 2.0439 1.3924 33 1 2.1546 1.5632 2.0904 34 1 1.6200 4.0395 0.3855 35 1 1.9392 4.0154 2.1372 36 1 5.4526 2.1061 -2.2736 37 1 7.7926 3.5650 -1.6627 38 1 7.9280 1.9518 -0.9226 39 1 9.8531 2.8587 -2.8519 40 1 9.8859 1.1081 -3.3384 41 1 9.4929 3.2690 -5.2421 42 1 8.8259 1.5975 -5.4961 43 1 7.9005 4.8560 -7.3162 44 1 3.9850 0.9169 0.5814 45 1 3.7044 0.9426 -1.1769 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039045979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:55 Heat of formation + Delta-G solvation = -40.496509 kcal Electronic energy + Delta-G solvation = -24974.557553 eV Core-core repulsion = 21414.170753 eV Total energy + Delta-G solvation = -3560.386800 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.46941 -40.14000 -39.35798 -37.18620 -35.58489 -34.20297 -32.86499 -31.83099 -29.92748 -29.47181 -27.62803 -25.49140 -25.27348 -24.04234 -23.17044 -21.69655 -21.40722 -20.79450 -18.96669 -18.18441 -17.87768 -17.20685 -17.06451 -16.66201 -16.51409 -16.24296 -15.86353 -15.70813 -15.39068 -15.27788 -14.98213 -14.60320 -14.54904 -13.89563 -13.58537 -13.29584 -13.04900 -12.95838 -12.87860 -12.74539 -12.68522 -12.56321 -12.49966 -12.26406 -11.87412 -11.80284 -11.76817 -11.49086 -11.33269 -10.86373 -10.82199 -10.70388 -10.08169 -9.49970 -8.86112 -7.84948 -5.16240 1.44693 1.45875 1.46738 1.54611 1.81302 2.48411 2.64242 2.99399 3.35426 3.40985 3.60441 3.69924 3.86714 3.92689 4.00303 4.04387 4.14404 4.24263 4.28288 4.37234 4.48005 4.48705 4.58161 4.63128 4.64010 4.70747 4.73056 4.86435 4.88709 4.98594 5.08179 5.08294 5.11408 5.34852 5.35983 5.39534 5.63766 5.77144 5.81061 5.93426 5.97632 6.00753 6.49620 6.97893 7.14727 7.67883 8.62236 9.32069 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014632 B = 0.004068 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.144726 B = 6880.605574 C = 7517.611811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 N -0.542 5.542 4 C 0.016 3.984 5 C 0.055 3.945 6 O -0.388 6.388 7 C 0.083 3.917 8 H 0.098 0.902 9 C 0.517 3.483 10 O -0.572 6.572 11 N -0.703 5.703 12 C 0.133 3.867 13 C 0.134 3.866 14 H 0.076 0.924 15 C -0.131 4.131 16 C 0.150 3.850 17 N -0.629 5.629 18 C -0.210 4.210 19 H 0.086 0.914 20 C -0.070 4.070 21 N -0.954 5.954 22 Si 0.963 3.037 23 H -0.265 1.265 24 H -0.300 1.300 25 H -0.293 1.293 26 C 0.040 3.960 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.037 0.963 31 H 0.082 0.918 32 H 0.113 0.887 33 H 0.039 0.961 34 H 0.066 0.934 35 H 0.121 0.879 36 H 0.411 0.589 37 H 0.041 0.959 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.037 0.963 42 H 0.024 0.976 43 H 0.244 0.756 44 H 0.041 0.959 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.954 -11.001 14.031 22.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.079 4.079 3 N -0.268 5.268 4 C -0.111 4.111 5 C -0.021 4.021 6 O -0.306 6.306 7 C 0.021 3.979 8 H 0.115 0.885 9 C 0.303 3.697 10 O -0.451 6.451 11 N -0.354 5.354 12 C 0.008 3.992 13 C 0.028 3.972 14 H 0.094 0.906 15 C -0.170 4.170 16 C 0.024 3.976 17 N -0.356 5.356 18 C -0.339 4.339 19 H 0.103 0.897 20 C -0.263 4.263 21 N -0.604 5.604 22 Si 0.793 3.207 23 H -0.190 1.190 24 H -0.228 1.228 25 H -0.221 1.221 26 C -0.089 4.089 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.131 0.869 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.139 0.861 36 H 0.247 0.753 37 H 0.060 0.940 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.113 0.887 41 H 0.056 0.944 42 H 0.042 0.958 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.726 -10.115 14.227 21.603 hybrid contribution -0.418 0.340 -0.635 0.833 sum -13.145 -9.775 13.592 21.285 Atomic orbital electron populations 1.21770 0.93337 1.02592 1.02480 1.22201 0.97260 0.87027 1.01460 1.62287 1.11665 1.17823 1.35041 1.22902 1.03143 0.94823 0.90276 1.23015 0.79621 0.96249 1.03252 1.88080 1.25539 1.77077 1.39917 1.21887 0.91011 0.95061 0.89923 0.88490 1.20501 0.89987 0.77341 0.81920 1.90668 1.65553 1.46421 1.42490 1.45814 1.08799 1.62196 1.18633 1.21597 0.79448 1.00485 0.97673 1.22680 0.94833 0.93267 0.86404 0.90648 1.23573 0.94751 1.01993 0.96685 1.22165 0.86180 0.95733 0.93480 1.46424 1.22460 1.42963 1.23741 1.19338 0.98913 1.12205 1.03455 0.89660 1.25478 1.00162 1.02576 0.98056 1.69999 1.30432 1.45160 1.14806 0.85218 0.79144 0.78503 0.77799 1.18963 1.22801 1.22058 1.22545 0.89203 0.93983 1.03136 0.92254 0.90822 0.92183 0.94471 0.89992 0.86867 0.94226 0.91574 0.86121 0.75337 0.94049 0.89984 0.90546 0.88664 0.94448 0.95844 0.94660 0.94076 0.87574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.84 71.98 0.71 -0.93 16 2 C 0.05 0.69 5.68 86.30 0.49 1.18 16 3 N -0.54 -10.10 4.73 -895.20 -4.23 -14.34 16 4 C 0.02 0.27 5.43 86.31 0.47 0.74 16 5 C 0.05 1.09 7.01 72.02 0.50 1.60 16 6 O -0.39 -11.61 10.01 -130.02 -1.30 -12.91 16 7 C 0.08 2.31 3.21 29.88 0.10 2.40 16 8 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 9 C 0.52 17.77 7.18 87.65 0.63 18.40 16 10 O -0.57 -24.58 16.51 15.92 0.26 -24.32 16 11 N -0.70 -22.43 5.49 -463.06 -2.54 -24.98 16 12 C 0.13 4.55 5.54 86.38 0.48 5.03 16 13 C 0.13 4.74 4.33 45.09 0.20 4.93 16 14 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 15 C -0.13 -4.44 7.86 31.26 0.25 -4.19 16 16 C 0.15 6.77 7.52 86.48 0.65 7.42 16 17 N -0.63 -29.85 3.57 -694.14 -2.48 -32.33 16 18 C -0.21 -11.13 10.51 84.03 0.88 -10.25 16 19 H 0.09 4.28 7.80 -2.91 -0.02 4.26 16 20 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 21 N -0.95 -57.10 11.38 21.65 0.25 -56.86 16 22 Si 0.96 45.68 29.55 68.60 2.03 47.71 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 25 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 26 C 0.04 0.87 4.89 86.31 0.42 1.30 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.61 6.51 -2.39 -0.02 0.60 16 30 H 0.04 0.53 8.12 -2.39 -0.02 0.51 16 31 H 0.08 1.14 8.04 -2.39 -0.02 1.12 16 32 H 0.11 1.37 6.37 -2.39 -0.02 1.35 16 33 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.41 11.83 8.36 -92.71 -0.77 11.05 16 37 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 39 H 0.08 2.61 8.10 -2.39 -0.02 2.59 16 40 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.04 1.95 7.15 -2.39 -0.02 1.93 16 42 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.24 14.36 8.31 -92.71 -0.77 13.59 16 44 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 45 H 0.11 2.00 7.97 -2.39 -0.02 1.98 16 Total: -1.00 -72.59 361.51 -1.59 -74.18 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.19 Total: 19.66 kcal Atomic # 6 Polarization: 17.93 SS G_CDS: 6.24 Total: 24.17 kcal Atomic # 7 Polarization: -119.48 SS G_CDS: -9.01 Total: -128.50 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -1.04 Total: -37.22 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -72.59 -1.59 -74.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039045979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.688 kcal (2) G-P(sol) polarization free energy of solvation -72.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds