Wall clock time and date at job start Tue Mar 31 2020 03:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46907 * 109.47089 * 2 1 4 4 C 1.47010 * 110.99952 * 287.65885 * 3 2 1 5 5 C 1.53101 * 109.25814 * 177.60714 * 4 3 2 6 6 O 1.43020 * 109.25670 * 56.84790 * 5 4 3 7 7 C 1.43014 * 113.73491 * 301.32747 * 6 5 4 8 8 C 1.47008 * 111.00041 * 164.02167 * 3 2 1 9 9 H 1.09002 * 109.54683 * 62.43274 * 8 3 2 10 10 C 1.50704 * 109.50561 * 302.32657 * 8 3 2 11 11 O 1.21281 * 120.00256 * 333.60464 * 10 8 3 12 12 N 1.34783 * 119.99871 * 153.60375 * 10 8 3 13 13 C 1.46496 * 119.99835 * 355.87733 * 12 10 8 14 14 C 1.46503 * 119.99647 * 175.87683 * 12 10 8 15 15 C 1.53495 * 114.20406 * 120.00149 * 14 12 10 16 16 N 1.47063 * 87.98578 * 87.51590 * 15 14 12 17 17 C 1.36939 * 136.05703 * 207.07883 * 16 15 14 18 18 H 1.07994 * 119.99978 * 7.00856 * 17 16 15 19 19 C 1.38811 * 119.99919 * 187.00264 * 17 16 15 20 20 N 1.31620 * 119.99901 * 6.73258 * 19 17 16 21 21 Si 1.86799 * 120.00208 * 186.72411 * 19 17 16 22 22 H 1.48500 * 109.47240 * 265.02958 * 21 19 17 23 23 H 1.48498 * 109.47377 * 145.02446 * 21 19 17 24 24 H 1.48504 * 109.46984 * 25.02373 * 21 19 17 25 25 C 1.47064 * 87.88503 * 27.34061 * 16 15 14 26 26 H 1.08999 * 109.47292 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47292 * 299.99976 * 1 2 3 28 28 H 1.09002 * 109.47474 * 59.99654 * 1 2 3 29 29 H 1.08995 * 109.47049 * 240.00520 * 2 1 3 30 30 H 1.08996 * 109.47159 * 119.99718 * 2 1 3 31 31 H 1.08998 * 109.50907 * 57.66946 * 4 3 2 32 32 H 1.09002 * 109.53944 * 297.56273 * 4 3 2 33 33 H 1.08996 * 109.50426 * 296.90852 * 5 4 3 34 34 H 1.09001 * 109.54217 * 176.80250 * 5 4 3 35 35 H 1.08998 * 109.50851 * 298.73650 * 7 6 5 36 36 H 1.09004 * 109.54068 * 178.62550 * 7 6 5 37 37 H 1.09002 * 109.46853 * 274.68997 * 13 12 10 38 38 H 1.08996 * 109.47221 * 34.68886 * 13 12 10 39 39 H 1.08999 * 109.46990 * 154.69645 * 13 12 10 40 40 H 1.08999 * 113.28371 * 346.93045 * 14 12 10 41 41 H 1.08995 * 113.46850 * 332.73677 * 15 14 12 42 42 H 1.09004 * 113.51853 * 202.30330 * 15 14 12 43 43 H 0.97009 * 120.00075 * 179.97438 * 20 19 17 44 44 H 1.09004 * 113.47021 * 87.43554 * 25 16 15 45 45 H 1.09008 * 113.46966 * 217.87564 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.8027 2.0205 -1.3078 5 6 2.2714 3.4767 -1.2456 6 8 3.6443 3.5137 -0.8467 7 6 3.8915 2.9039 0.4231 8 6 3.4392 1.4420 0.3778 9 1 4.0342 0.8995 -0.3570 10 6 3.6240 0.8157 1.7361 11 8 2.7052 0.8021 2.5276 12 7 4.8103 0.2708 2.0712 13 6 5.8914 0.2061 1.0847 14 6 5.0185 -0.2568 3.4219 15 6 5.3654 -1.7514 3.4672 16 7 6.7784 -1.3751 3.3104 17 6 7.9040 -1.9622 2.7971 18 1 7.8310 -2.9042 2.2740 19 6 9.1388 -1.3466 2.9490 20 7 9.2496 -0.2697 3.6977 21 14 10.6434 -2.0465 2.0912 22 1 11.3723 -2.9435 3.0236 23 1 11.5362 -0.9360 1.6732 24 1 10.2177 -2.8165 0.8949 25 6 6.4520 -0.0934 3.9534 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.7418 1.9899 -1.5559 32 1 2.3704 1.4877 -2.0707 33 1 1.6670 4.0229 -0.5214 34 1 2.1654 3.9361 -2.2283 35 1 3.3342 3.4335 1.1959 36 1 4.9572 2.9484 0.6477 37 1 5.7749 -0.6909 0.4763 38 1 5.8520 1.0871 0.4442 39 1 6.8516 0.1736 1.5995 40 1 4.2427 0.0435 4.1261 41 1 4.9699 -2.3146 2.6221 42 1 5.1450 -2.2202 4.4263 43 1 10.1126 0.1604 3.8042 44 1 6.5177 -0.1242 5.0410 45 1 6.9822 0.7560 3.5225 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043176073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:17 Heat of formation + Delta-G solvation = 7.897991 kcal Electronic energy + Delta-G solvation = -25940.342150 eV Core-core repulsion = 22382.053893 eV Total energy + Delta-G solvation = -3558.288257 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.62486 -39.11860 -37.61940 -36.03928 -34.15840 -32.29920 -31.45228 -30.98246 -28.01718 -26.76009 -26.22469 -25.00689 -24.63409 -23.12192 -22.15052 -21.25660 -19.68420 -18.29427 -17.27183 -16.70051 -16.61954 -16.50081 -15.55750 -15.17213 -15.11949 -14.87260 -14.60542 -14.25464 -14.07560 -13.70501 -13.53433 -13.28562 -12.75264 -12.67015 -12.39844 -12.17002 -12.02123 -11.85993 -11.67426 -11.49334 -11.37562 -11.09996 -10.92271 -10.88152 -10.68750 -10.66497 -10.16353 -9.96997 -9.92276 -9.48394 -9.36236 -8.85598 -8.46953 -8.02918 -6.97099 -5.87886 -3.19298 2.79265 3.16192 3.32751 3.38866 3.40521 3.59620 3.85299 4.38172 4.65786 4.67505 4.81691 4.94971 4.96481 5.04546 5.18624 5.21988 5.31631 5.38610 5.39467 5.43793 5.44042 5.54966 5.58922 5.70900 5.77651 5.82010 5.95051 6.07980 6.10202 6.14432 6.17530 6.43913 6.51347 6.63691 6.74268 6.85351 6.88461 6.93494 7.07783 7.24569 7.42660 7.84558 7.90380 8.50896 8.94159 9.60093 10.54705 11.30090 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.020757 B = 0.004235 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.608547 B = 6609.507445 C = 7125.641922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.048 3.952 3 N -0.515 5.515 4 C 0.018 3.982 5 C 0.061 3.939 6 O -0.379 6.379 7 C 0.077 3.923 8 C 0.032 3.968 9 H 0.071 0.929 10 C 0.517 3.483 11 O -0.530 6.530 12 N -0.575 5.575 13 C 0.075 3.925 14 C 0.083 3.917 15 C 0.104 3.896 16 N -0.605 5.605 17 C -0.219 4.219 18 H 0.080 0.920 19 C -0.004 4.004 20 N -0.918 5.918 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.289 1.289 24 H -0.280 1.280 25 C 0.153 3.847 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.031 0.969 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.115 0.885 40 H 0.100 0.900 41 H 0.040 0.960 42 H 0.042 0.958 43 H 0.255 0.745 44 H 0.042 0.958 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.044 5.280 -9.616 17.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.080 4.080 3 N -0.241 5.241 4 C -0.110 4.110 5 C -0.016 4.016 6 O -0.297 6.297 7 C 0.000 4.000 8 C -0.080 4.080 9 H 0.089 0.911 10 C 0.303 3.697 11 O -0.406 6.406 12 N -0.306 5.306 13 C -0.067 4.067 14 C -0.022 4.022 15 C -0.023 4.023 16 N -0.332 5.332 17 C -0.347 4.347 18 H 0.098 0.902 19 C -0.202 4.202 20 N -0.564 5.564 21 Si 0.739 3.261 22 H -0.216 1.216 23 H -0.215 1.215 24 H -0.205 1.205 25 C 0.026 3.974 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.117 0.883 35 H 0.086 0.914 36 H 0.124 0.876 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.134 0.866 40 H 0.117 0.883 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.272 5.580 -9.046 17.795 hybrid contribution 1.313 -1.220 -0.767 1.950 sum -12.959 4.360 -9.813 16.830 Atomic orbital electron populations 1.21696 0.94488 1.01374 1.02238 1.22172 0.96619 0.87938 1.01231 1.61991 1.15283 1.18689 1.28117 1.22866 1.02228 0.96001 0.89951 1.22707 0.82969 0.95057 1.00897 1.88019 1.26087 1.78915 1.36670 1.22553 1.01988 0.89280 0.86189 1.22321 0.90685 0.98942 0.96014 0.91113 1.20052 0.82463 0.78805 0.88338 1.90664 1.40161 1.58185 1.51622 1.47402 1.12538 1.57861 1.12834 1.21993 0.93446 0.99500 0.91779 1.22731 1.00075 0.96237 0.83174 1.22838 0.87064 0.94051 0.98369 1.45875 1.03836 1.15527 1.67952 1.18917 0.83531 1.04668 1.27538 0.90190 1.24804 0.97106 0.98456 0.99790 1.69846 1.23951 1.21534 1.41057 0.86158 0.82918 0.77959 0.79078 1.21630 1.21540 1.20518 1.22405 0.87711 0.91356 0.95894 0.92400 0.91519 0.93143 0.95073 0.89816 0.89145 0.93892 0.92030 0.88340 0.91392 0.87555 0.93260 0.93063 0.86629 0.88255 0.94150 0.94055 0.93505 0.93990 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.97 37.16 0.37 -1.11 16 2 C 0.05 0.61 5.34 -3.82 -0.02 0.59 16 3 N -0.51 -6.75 4.22 -227.73 -0.96 -7.71 16 4 C 0.02 0.18 5.47 -3.71 -0.02 0.16 16 5 C 0.06 0.61 7.01 37.21 0.26 0.87 16 6 O -0.38 -4.82 10.83 -35.23 -0.38 -5.21 16 7 C 0.08 1.02 6.13 37.21 0.23 1.25 16 8 C 0.03 0.46 1.55 -68.75 -0.11 0.35 16 9 H 0.07 0.99 6.74 -51.93 -0.35 0.64 16 10 C 0.52 8.76 5.64 -10.98 -0.06 8.69 16 11 O -0.53 -10.32 15.01 5.56 0.08 -10.24 16 12 N -0.57 -10.17 3.12 -173.56 -0.54 -10.72 16 13 C 0.08 1.30 8.98 59.84 0.54 1.84 16 14 C 0.08 1.59 4.67 -67.68 -0.32 1.27 16 15 C 0.10 2.12 8.31 -8.52 -0.07 2.05 16 16 N -0.61 -14.48 2.45 -184.64 -0.45 -14.93 16 17 C -0.22 -5.74 10.19 -15.06 -0.15 -5.89 16 18 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 19 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 20 N -0.92 -25.76 11.83 55.49 0.66 -25.11 16 21 Si 0.91 21.09 29.56 -169.99 -5.02 16.06 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 C 0.15 3.40 6.24 -8.38 -0.05 3.35 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.45 6.74 -51.93 -0.35 0.10 16 29 H 0.03 0.37 8.05 -51.93 -0.42 -0.05 16 30 H 0.08 1.28 5.91 -51.93 -0.31 0.98 16 31 H 0.09 0.77 6.64 -51.93 -0.34 0.43 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.11 1.35 7.16 -51.93 -0.37 0.98 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.74 5.60 -51.93 -0.29 0.45 16 39 H 0.12 2.43 5.10 -51.93 -0.26 2.17 16 40 H 0.10 1.87 7.32 -51.93 -0.38 1.49 16 41 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.07 1.59 6.82 -51.92 -0.35 1.24 16 LS Contribution 346.96 15.07 5.23 5.23 Total: -1.00 -30.02 346.96 -8.10 -38.12 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -7.20 Total: 1.30 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 0.50 Total: 13.21 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: -1.30 Total: -58.47 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.30 Total: -15.44 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.02 -8.10 -38.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043176073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.016 kcal (2) G-P(sol) polarization free energy of solvation -30.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds