Wall clock time and date at job start Tue Mar 31 2020 03:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47234 * 2 1 4 4 C 1.50695 * 109.47321 * 120.00639 * 2 1 3 5 5 O 1.21278 * 120.00251 * 103.74065 * 4 2 1 6 6 N 1.34779 * 120.00012 * 283.73777 * 4 2 1 7 7 C 1.46509 * 119.99877 * 359.97438 * 6 4 2 8 8 C 1.46500 * 120.00482 * 180.02562 * 6 4 2 9 9 C 1.53948 * 113.74024 * 218.74405 * 8 6 4 10 10 N 1.47813 * 86.03281 * 222.07809 * 9 8 6 11 11 C 1.36940 * 134.45809 * 204.64243 * 10 9 8 12 12 H 1.07998 * 119.99948 * 179.87383 * 11 10 9 13 13 C 1.38818 * 119.99771 * 359.86518 * 11 10 9 14 14 N 1.31611 * 119.99743 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 119.99711 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47665 * 60.00179 * 15 13 11 17 17 H 1.48501 * 109.46798 * 180.02562 * 15 13 11 18 18 H 1.48510 * 109.47138 * 299.99868 * 15 13 11 19 19 C 1.47586 * 91.05205 * 24.55084 * 10 9 8 20 20 N 1.46901 * 109.46812 * 240.00646 * 2 1 3 21 21 C 1.47010 * 111.00503 * 75.90153 * 20 2 1 22 22 C 1.53092 * 109.26086 * 177.60897 * 21 20 2 23 23 O 1.43019 * 109.25857 * 56.84833 * 22 21 20 24 24 C 1.43015 * 113.73843 * 301.32791 * 23 22 21 25 25 C 1.47019 * 110.99518 * 312.26378 * 20 2 1 26 26 H 1.09001 * 109.46501 * 299.99351 * 1 2 3 27 27 H 1.08994 * 109.47485 * 59.99280 * 1 2 3 28 28 H 1.08998 * 109.46801 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47107 * 89.99740 * 7 6 4 30 30 H 1.08999 * 109.46797 * 330.00390 * 7 6 4 31 31 H 1.08997 * 109.47412 * 210.00344 * 7 6 4 32 32 H 1.09001 * 112.93702 * 350.32869 * 8 6 4 33 33 H 1.09003 * 113.76760 * 336.34135 * 9 8 6 34 34 H 1.08995 * 113.76847 * 107.74430 * 9 8 6 35 35 H 0.97001 * 120.00028 * 179.97438 * 14 13 11 36 36 H 1.09001 * 113.76754 * 221.15405 * 19 10 9 37 37 H 1.08994 * 113.77208 * 89.75472 * 19 10 9 38 38 H 1.09005 * 109.50459 * 297.54137 * 21 20 2 39 39 H 1.09003 * 109.50229 * 57.67018 * 21 20 2 40 40 H 1.09000 * 109.50731 * 296.91621 * 22 21 20 41 41 H 1.09003 * 109.54654 * 176.80229 * 22 21 20 42 42 H 1.09000 * 109.50795 * 298.73930 * 24 23 22 43 43 H 1.08998 * 109.54385 * 178.62754 * 24 23 22 44 44 H 1.08998 * 109.51200 * 302.32931 * 25 20 2 45 45 H 1.09004 * 109.50504 * 62.42297 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.4698 -1.8383 1.1432 6 7 1.9957 -0.0926 2.4276 7 6 1.4680 1.2701 2.5327 8 6 2.4846 -0.7830 3.6236 9 6 1.6375 -0.5186 4.8816 10 7 2.9248 -0.4030 5.5989 11 6 3.3157 -0.5701 6.9007 12 1 4.3494 -0.4235 7.1771 13 6 2.3833 -0.9276 7.8649 14 7 1.1237 -1.1065 7.5279 15 14 2.9165 -1.1547 9.6407 16 1 3.4915 0.1156 10.1514 17 1 1.7413 -1.5336 10.4657 18 1 3.9406 -2.2275 9.7167 19 6 3.6195 -0.0378 4.3491 20 7 2.0196 -0.6924 -1.1995 21 6 1.8801 0.1564 -2.3917 22 6 2.4554 -0.5787 -3.6052 23 8 1.7897 -1.8357 -3.7545 24 6 1.9058 -2.6880 -2.6119 25 6 1.3248 -1.9742 -1.3883 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0277 -0.0005 29 1 0.3957 1.2306 2.7247 30 1 1.6506 1.8034 1.5998 31 1 1.9649 1.7900 3.3517 32 1 2.6937 -1.8385 3.4492 33 1 1.0713 0.4120 4.8424 34 1 1.0350 -1.3719 5.1928 35 1 0.4722 -1.3567 8.2016 36 1 4.5964 -0.5080 4.2360 37 1 3.6368 1.0342 4.1532 38 1 0.8255 0.3723 -2.5634 39 1 2.4232 1.0892 -2.2400 40 1 3.5220 -0.7472 -3.4566 41 1 2.3032 0.0224 -4.5016 42 1 2.9565 -2.9177 -2.4345 43 1 1.3561 -3.6123 -2.7891 44 1 1.4627 -2.5967 -0.5043 45 1 0.2613 -1.7924 -1.5432 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044381844.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:00 Heat of formation + Delta-G solvation = 3.285508 kcal Electronic energy + Delta-G solvation = -25265.108432 eV Core-core repulsion = 21706.620162 eV Total energy + Delta-G solvation = -3558.488269 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.55396 -39.25570 -37.70135 -35.94571 -34.53836 -32.10015 -31.39379 -30.84729 -27.71979 -26.93690 -26.60767 -24.83641 -24.53592 -24.20441 -22.59384 -20.48043 -19.43244 -18.48134 -17.33697 -16.77565 -16.63048 -16.15884 -15.83747 -15.35757 -15.14075 -14.99271 -14.82342 -14.60496 -14.03483 -13.77312 -13.71734 -13.17843 -12.61043 -12.56928 -12.40359 -12.38535 -12.02151 -11.85633 -11.73886 -11.57253 -11.42042 -11.31014 -11.21733 -10.89703 -10.72359 -10.66090 -10.24982 -10.10025 -9.96929 -9.57647 -9.27353 -8.82615 -8.44686 -8.13136 -6.93629 -5.80949 -3.13746 2.84321 3.09328 3.38541 3.42459 3.43612 3.65204 3.79828 4.43138 4.53222 4.65248 4.78363 4.81794 4.92069 4.99686 5.03657 5.15181 5.17636 5.25169 5.37125 5.38970 5.42734 5.46412 5.50345 5.55329 5.60564 5.73548 5.75627 5.82932 5.89212 5.96360 6.07328 6.15643 6.42612 6.55720 6.71175 6.78038 6.79700 6.98764 7.16792 7.32949 7.49197 7.76693 7.92985 8.48548 9.00077 9.66266 10.53240 11.36217 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.038663 B = 0.003028 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.033451 B = 9243.586972 C = 9385.551103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.064 3.936 3 H 0.104 0.896 4 C 0.521 3.479 5 O -0.531 6.531 6 N -0.599 5.599 7 C 0.076 3.924 8 C 0.092 3.908 9 C 0.157 3.843 10 N -0.606 5.606 11 C -0.224 4.224 12 H 0.081 0.919 13 C -0.006 4.006 14 N -0.921 5.921 15 Si 0.915 3.085 16 H -0.285 1.285 17 H -0.289 1.289 18 H -0.283 1.283 19 C 0.108 3.892 20 N -0.515 5.515 21 C 0.016 3.984 22 C 0.066 3.934 23 O -0.390 6.390 24 C 0.065 3.935 25 C 0.010 3.990 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.031 0.969 34 H 0.076 0.924 35 H 0.255 0.745 36 H 0.047 0.953 37 H 0.035 0.965 38 H 0.044 0.956 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.096 0.904 42 H 0.061 0.939 43 H 0.097 0.903 44 H 0.110 0.890 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.891 4.876 -20.672 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.048 4.048 3 H 0.122 0.878 4 C 0.307 3.693 5 O -0.408 6.408 6 N -0.332 5.332 7 C -0.067 4.067 8 C -0.011 4.011 9 C 0.031 3.969 10 N -0.333 5.333 11 C -0.351 4.351 12 H 0.099 0.901 13 C -0.203 4.203 14 N -0.568 5.568 15 Si 0.745 3.255 16 H -0.211 1.211 17 H -0.215 1.215 18 H -0.210 1.210 19 C -0.019 4.019 20 N -0.240 5.240 21 C -0.112 4.112 22 C -0.012 4.012 23 O -0.308 6.308 24 C -0.012 4.012 25 C -0.118 4.118 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.133 0.867 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.079 0.921 43 H 0.115 0.885 44 H 0.128 0.872 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.299 4.035 -20.449 20.884 hybrid contribution -0.552 0.518 1.289 1.495 sum -1.851 4.553 -19.161 19.781 Atomic orbital electron populations 1.22384 0.94943 1.03565 1.03230 1.21686 0.94579 0.98588 0.89959 0.87848 1.20282 0.78468 0.86598 0.83945 1.90612 1.46119 1.18752 1.85287 1.48016 1.61828 1.15635 1.07692 1.21840 0.99294 0.83102 1.02499 1.24015 0.97209 0.97762 0.82132 1.22658 0.90075 0.99584 0.84573 1.45695 1.04794 1.79673 1.03108 1.18953 0.93972 1.40539 0.81669 0.90101 1.24798 0.95438 1.01869 0.98214 1.69800 1.01122 1.52933 1.32918 0.86165 0.77253 0.78012 0.84114 1.21146 1.21517 1.20980 1.22965 0.95784 0.96636 0.86490 1.62078 1.56626 1.03938 1.01323 1.22834 1.00325 0.97071 0.90995 1.22621 0.96602 0.84923 0.97017 1.87953 1.75808 1.27941 1.39140 1.22685 1.01308 0.92824 0.84356 1.23052 0.95932 0.91889 1.00929 0.90771 0.91664 0.91312 0.92433 0.91771 0.90270 0.86702 0.95111 0.90585 0.93509 0.93507 0.94738 0.93758 0.89695 0.92245 0.88608 0.92104 0.88541 0.87173 0.93915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 8.19 37.16 0.30 -1.50 16 2 C 0.06 0.74 1.93 -68.86 -0.13 0.60 16 3 H 0.10 1.01 6.29 -51.93 -0.33 0.68 16 4 C 0.52 8.14 6.86 -10.99 -0.08 8.06 16 5 O -0.53 -10.16 13.74 5.56 0.08 -10.08 16 6 N -0.60 -9.45 3.09 -175.75 -0.54 -9.99 16 7 C 0.08 0.93 7.95 59.85 0.48 1.40 16 8 C 0.09 1.83 4.40 -70.15 -0.31 1.52 16 9 C 0.16 3.65 6.97 -2.84 -0.02 3.63 16 10 N -0.61 -15.53 3.70 -177.90 -0.66 -16.19 16 11 C -0.22 -6.28 10.70 -15.06 -0.16 -6.44 16 12 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 13 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 14 N -0.92 -27.09 11.39 55.49 0.63 -26.46 16 15 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 C 0.11 2.25 8.46 -2.97 -0.03 2.23 16 20 N -0.51 -6.10 4.44 -227.71 -1.01 -7.11 16 21 C 0.02 0.15 5.44 -3.72 -0.02 0.13 16 22 C 0.07 0.59 7.01 37.21 0.26 0.85 16 23 O -0.39 -4.43 10.83 -35.23 -0.38 -4.81 16 24 C 0.07 0.71 7.01 37.21 0.26 0.97 16 25 C 0.01 0.11 4.50 -3.70 -0.02 0.10 16 26 H 0.07 0.70 6.47 -51.93 -0.34 0.36 16 27 H 0.06 0.54 6.99 -51.93 -0.36 0.18 16 28 H 0.07 0.76 6.37 -51.93 -0.33 0.43 16 29 H 0.06 0.66 7.45 -51.93 -0.39 0.27 16 30 H 0.06 0.58 6.02 -51.93 -0.31 0.27 16 31 H 0.08 1.05 6.35 -51.93 -0.33 0.72 16 32 H 0.12 2.50 7.22 -51.93 -0.37 2.13 16 33 H 0.03 0.70 6.83 -51.93 -0.35 0.34 16 34 H 0.08 1.99 7.16 -51.93 -0.37 1.62 16 35 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.04 0.67 6.84 -51.93 -0.36 0.32 16 38 H 0.04 0.39 6.98 -51.93 -0.36 0.03 16 39 H 0.08 0.64 8.04 -51.93 -0.42 0.22 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.11 1.58 5.89 -51.93 -0.31 1.28 16 45 H 0.04 0.49 6.36 -51.93 -0.33 0.15 16 LS Contribution 341.11 15.07 5.14 5.14 Total: -1.00 -32.92 341.11 -8.24 -41.16 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.92 Total: 0.04 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 0.45 Total: 11.27 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: -1.58 Total: -59.76 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.31 Total: -14.89 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.92 -8.24 -41.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044381844.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.443 kcal (2) G-P(sol) polarization free energy of solvation -32.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds