Wall clock time and date at job start Tue Mar 31 2020 03:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47234 * 2 1 4 4 C 1.50695 * 109.47321 * 120.00639 * 2 1 3 5 5 O 1.21278 * 120.00251 * 103.74065 * 4 2 1 6 6 N 1.34779 * 120.00012 * 283.73777 * 4 2 1 7 7 C 1.46509 * 119.99877 * 359.97438 * 6 4 2 8 8 C 1.46500 * 120.00482 * 180.02562 * 6 4 2 9 9 C 1.53948 * 113.74024 * 218.74405 * 8 6 4 10 10 N 1.47813 * 86.03281 * 222.07809 * 9 8 6 11 11 C 1.36940 * 134.45809 * 204.64243 * 10 9 8 12 12 H 1.07998 * 119.99948 * 179.87383 * 11 10 9 13 13 C 1.38818 * 119.99771 * 359.86518 * 11 10 9 14 14 N 1.31611 * 119.99743 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 119.99711 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47665 * 60.00179 * 15 13 11 17 17 H 1.48501 * 109.46798 * 180.02562 * 15 13 11 18 18 H 1.48510 * 109.47138 * 299.99868 * 15 13 11 19 19 C 1.47586 * 91.05205 * 24.55084 * 10 9 8 20 20 N 1.46901 * 109.46812 * 240.00646 * 2 1 3 21 21 C 1.47010 * 111.00503 * 75.90153 * 20 2 1 22 22 C 1.53092 * 109.26086 * 177.60897 * 21 20 2 23 23 O 1.43019 * 109.25857 * 56.84833 * 22 21 20 24 24 C 1.43015 * 113.73843 * 301.32791 * 23 22 21 25 25 C 1.47019 * 110.99518 * 312.26378 * 20 2 1 26 26 H 1.09001 * 109.46501 * 299.99351 * 1 2 3 27 27 H 1.08994 * 109.47485 * 59.99280 * 1 2 3 28 28 H 1.08998 * 109.46801 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47107 * 89.99740 * 7 6 4 30 30 H 1.08999 * 109.46797 * 330.00390 * 7 6 4 31 31 H 1.08997 * 109.47412 * 210.00344 * 7 6 4 32 32 H 1.09001 * 112.93702 * 350.32869 * 8 6 4 33 33 H 1.09003 * 113.76760 * 336.34135 * 9 8 6 34 34 H 1.08995 * 113.76847 * 107.74430 * 9 8 6 35 35 H 0.97001 * 120.00028 * 179.97438 * 14 13 11 36 36 H 1.09001 * 113.76754 * 221.15405 * 19 10 9 37 37 H 1.08994 * 113.77208 * 89.75472 * 19 10 9 38 38 H 1.09005 * 109.50459 * 297.54137 * 21 20 2 39 39 H 1.09003 * 109.50229 * 57.67018 * 21 20 2 40 40 H 1.09000 * 109.50731 * 296.91621 * 22 21 20 41 41 H 1.09003 * 109.54654 * 176.80229 * 22 21 20 42 42 H 1.09000 * 109.50795 * 298.73930 * 24 23 22 43 43 H 1.08998 * 109.54385 * 178.62754 * 24 23 22 44 44 H 1.08998 * 109.51200 * 302.32931 * 25 20 2 45 45 H 1.09004 * 109.50504 * 62.42297 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.4698 -1.8383 1.1432 6 7 1.9957 -0.0926 2.4276 7 6 1.4680 1.2701 2.5327 8 6 2.4846 -0.7830 3.6236 9 6 1.6375 -0.5186 4.8816 10 7 2.9248 -0.4030 5.5989 11 6 3.3157 -0.5701 6.9007 12 1 4.3494 -0.4235 7.1771 13 6 2.3833 -0.9276 7.8649 14 7 1.1237 -1.1065 7.5279 15 14 2.9165 -1.1547 9.6407 16 1 3.4915 0.1156 10.1514 17 1 1.7413 -1.5336 10.4657 18 1 3.9406 -2.2275 9.7167 19 6 3.6195 -0.0378 4.3491 20 7 2.0196 -0.6924 -1.1995 21 6 1.8801 0.1564 -2.3917 22 6 2.4554 -0.5787 -3.6052 23 8 1.7897 -1.8357 -3.7545 24 6 1.9058 -2.6880 -2.6119 25 6 1.3248 -1.9742 -1.3883 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0277 -0.0005 29 1 0.3957 1.2306 2.7247 30 1 1.6506 1.8034 1.5998 31 1 1.9649 1.7900 3.3517 32 1 2.6937 -1.8385 3.4492 33 1 1.0713 0.4120 4.8424 34 1 1.0350 -1.3719 5.1928 35 1 0.4722 -1.3567 8.2016 36 1 4.5964 -0.5080 4.2360 37 1 3.6368 1.0342 4.1532 38 1 0.8255 0.3723 -2.5634 39 1 2.4232 1.0892 -2.2400 40 1 3.5220 -0.7472 -3.4566 41 1 2.3032 0.0224 -4.5016 42 1 2.9565 -2.9177 -2.4345 43 1 1.3561 -3.6123 -2.7891 44 1 1.4627 -2.5967 -0.5043 45 1 0.2613 -1.7924 -1.5432 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044381844.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:00 Heat of formation + Delta-G solvation = -21.344920 kcal Electronic energy + Delta-G solvation = -25266.176487 eV Core-core repulsion = 21706.620162 eV Total energy + Delta-G solvation = -3559.556325 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.66662 -40.40668 -39.17041 -36.92778 -35.95924 -34.05959 -32.18072 -31.83952 -29.55679 -27.95020 -27.59919 -26.63312 -25.90161 -25.00477 -24.10027 -21.60462 -20.68092 -19.86502 -18.87290 -18.32234 -17.64120 -17.21956 -16.97064 -16.74988 -16.41772 -16.04189 -15.82086 -15.75280 -15.64796 -14.93530 -14.77971 -14.51895 -14.05571 -13.71914 -13.47721 -13.29241 -13.27931 -13.18480 -13.12993 -12.82523 -12.79062 -12.70347 -12.57438 -12.33532 -12.06973 -12.01456 -11.95845 -11.54893 -11.47357 -10.88245 -10.87607 -10.40452 -9.54232 -9.28765 -8.97224 -7.93973 -5.28196 1.44940 1.48708 1.54740 1.64593 1.89662 2.47112 2.78833 2.99897 3.24964 3.38147 3.53520 3.81528 3.89006 3.94751 4.00361 4.14102 4.20060 4.25708 4.30300 4.35266 4.37012 4.44181 4.59160 4.66755 4.67666 4.72942 4.77633 4.79051 4.85117 4.89307 4.91642 4.93486 5.05226 5.17493 5.18603 5.24912 5.45018 5.68538 5.85671 5.88476 5.99569 6.19776 6.52700 6.87593 7.24878 7.55996 8.49643 9.22811 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.038663 B = 0.003028 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.033451 B = 9243.586972 C = 9385.551103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.074 3.926 3 H 0.133 0.867 4 C 0.514 3.486 5 O -0.573 6.573 6 N -0.599 5.599 7 C 0.071 3.929 8 C 0.118 3.882 9 C 0.163 3.837 10 N -0.637 5.637 11 C -0.238 4.238 12 H 0.085 0.915 13 C -0.064 4.064 14 N -0.952 5.952 15 Si 0.982 3.018 16 H -0.274 1.274 17 H -0.293 1.293 18 H -0.278 1.278 19 C 0.115 3.885 20 N -0.534 5.534 21 C 0.018 3.982 22 C 0.059 3.941 23 O -0.402 6.402 24 C 0.068 3.932 25 C 0.015 3.985 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.040 0.960 34 H 0.036 0.964 35 H 0.250 0.750 36 H 0.047 0.953 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.107 0.893 40 H 0.053 0.947 41 H 0.123 0.877 42 H 0.049 0.951 43 H 0.109 0.891 44 H 0.079 0.921 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.795 7.103 -22.242 23.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.038 4.038 3 H 0.151 0.849 4 C 0.303 3.697 5 O -0.452 6.452 6 N -0.331 5.331 7 C -0.071 4.071 8 C 0.012 3.988 9 C 0.036 3.964 10 N -0.364 5.364 11 C -0.367 4.367 12 H 0.103 0.897 13 C -0.258 4.258 14 N -0.600 5.600 15 Si 0.810 3.190 16 H -0.200 1.200 17 H -0.219 1.219 18 H -0.204 1.204 19 C -0.011 4.011 20 N -0.259 5.259 21 C -0.109 4.109 22 C -0.017 4.017 23 O -0.321 6.321 24 C -0.009 4.009 25 C -0.113 4.113 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.125 0.875 40 H 0.072 0.928 41 H 0.141 0.859 42 H 0.067 0.933 43 H 0.127 0.873 44 H 0.098 0.902 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.192 6.305 -22.066 22.980 hybrid contribution -0.552 -0.169 1.683 1.779 sum -1.743 6.137 -20.383 21.358 Atomic orbital electron populations 1.22354 0.93445 1.02957 1.04765 1.21676 0.95503 0.98945 0.87641 0.84935 1.21161 0.77451 0.86235 0.84846 1.90606 1.47860 1.20807 1.85950 1.47983 1.61811 1.16874 1.06460 1.22102 0.99585 0.81017 1.04408 1.23213 0.95770 0.96781 0.83005 1.22514 0.89492 0.98300 0.86057 1.46012 1.06481 1.80304 1.03615 1.19355 0.94345 1.39859 0.83103 0.89704 1.25655 0.95570 1.02216 1.02316 1.69991 1.02057 1.54224 1.33770 0.85108 0.76654 0.78239 0.79045 1.19998 1.21902 1.20406 1.23064 0.95721 0.97987 0.84307 1.62026 1.57077 1.04355 1.02491 1.22930 1.01277 0.97242 0.89481 1.22850 0.96155 0.84351 0.98372 1.87939 1.76149 1.28933 1.39083 1.22649 1.00726 0.93359 0.84141 1.22892 0.96429 0.92050 0.99918 0.90036 0.89245 0.93064 0.91461 0.87641 0.91207 0.89352 0.94267 0.94515 0.94117 0.93437 0.92105 0.92797 0.87494 0.92816 0.85948 0.93273 0.87342 0.90223 0.93272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.98 8.19 71.98 0.59 -2.39 16 2 C 0.07 1.50 1.93 44.17 0.09 1.59 16 3 H 0.13 1.93 6.29 -2.39 -0.02 1.91 16 4 C 0.51 15.62 6.86 87.66 0.60 16.22 16 5 O -0.57 -22.42 13.74 -3.02 -0.04 -22.46 16 6 N -0.60 -18.23 3.09 -828.33 -2.56 -20.79 16 7 C 0.07 1.52 7.95 127.77 1.02 2.54 16 8 C 0.12 4.72 4.40 46.75 0.21 4.92 16 9 C 0.16 7.73 6.97 86.44 0.60 8.33 16 10 N -0.64 -33.10 3.70 -716.74 -2.65 -35.76 16 11 C -0.24 -13.53 10.70 84.03 0.90 -12.63 16 12 H 0.09 4.59 7.83 -2.91 -0.02 4.57 16 13 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 14 N -0.95 -57.48 11.39 21.65 0.25 -57.24 16 15 Si 0.98 45.81 29.55 68.60 2.03 47.84 16 16 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 19 C 0.12 4.74 8.46 86.48 0.73 5.48 16 20 N -0.53 -11.58 4.44 -874.34 -3.88 -15.46 16 21 C 0.02 0.27 5.44 86.31 0.47 0.73 16 22 C 0.06 0.92 7.01 72.01 0.50 1.42 16 23 O -0.40 -8.47 10.83 -148.98 -1.61 -10.08 16 24 C 0.07 1.46 7.01 72.02 0.50 1.96 16 25 C 0.02 0.35 4.50 86.32 0.39 0.74 16 26 H 0.08 1.27 6.47 -2.39 -0.02 1.25 16 27 H 0.09 1.11 6.99 -2.39 -0.02 1.10 16 28 H 0.05 1.06 6.37 -2.39 -0.02 1.04 16 29 H 0.07 1.35 7.45 -2.39 -0.02 1.33 16 30 H 0.11 1.41 6.02 -2.39 -0.01 1.39 16 31 H 0.07 1.67 6.35 -2.39 -0.02 1.66 16 32 H 0.09 4.03 7.22 -2.39 -0.02 4.02 16 33 H 0.04 1.79 6.83 -2.39 -0.02 1.77 16 34 H 0.04 2.02 7.16 -2.39 -0.02 2.00 16 35 H 0.25 14.67 8.31 -92.71 -0.77 13.89 16 36 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.06 2.23 6.84 -2.39 -0.02 2.21 16 38 H 0.05 0.72 6.98 -2.38 -0.02 0.70 16 39 H 0.11 1.12 8.04 -2.39 -0.02 1.10 16 40 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.08 2.38 5.89 -2.39 -0.01 2.36 16 45 H 0.05 1.06 6.36 -2.39 -0.02 1.05 16 Total: -1.00 -73.77 341.11 -0.42 -74.20 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.99 Total: 14.05 kcal Atomic # 6 Polarization: 18.64 SS G_CDS: 7.07 Total: 25.70 kcal Atomic # 7 Polarization: -120.39 SS G_CDS: -8.85 Total: -129.24 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -1.65 Total: -32.54 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -73.77 -0.42 -74.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044381844.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.851 kcal (2) G-P(sol) polarization free energy of solvation -73.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds