Wall clock time and date at job start Tue Mar 31 2020 03:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47847 * 110.99676 * 2 1 4 4 C 1.54904 * 104.79865 * 146.36459 * 3 2 1 5 5 C 1.55148 * 101.65020 * 322.92788 * 4 3 2 6 6 C 1.47445 * 110.99954 * 120.83549 * 2 1 3 7 7 H 1.09002 * 109.88288 * 117.17548 * 6 2 1 8 8 C 1.50701 * 109.88997 * 356.15432 * 6 2 1 9 9 O 1.21287 * 119.99955 * 308.29091 * 8 6 2 10 10 N 1.34769 * 119.99965 * 128.29247 * 8 6 2 11 11 C 1.46502 * 120.00081 * 180.02562 * 10 8 6 12 12 C 1.53006 * 109.47328 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.70813 * 60.33709 * 12 11 10 14 14 C 1.53711 * 109.74360 * 181.11074 * 12 11 10 15 15 O 1.42969 * 109.14661 * 172.15902 * 14 12 11 16 16 C 1.42959 * 114.16771 * 297.29176 * 15 14 12 17 17 C 1.53297 * 109.22301 * 62.57498 * 16 15 14 18 18 N 1.47146 * 108.38653 * 307.69777 * 17 16 15 19 19 C 1.36938 * 120.98254 * 230.50770 * 18 17 16 20 20 H 1.08005 * 119.99394 * 147.72374 * 19 18 17 21 21 C 1.38803 * 120.00193 * 327.72458 * 19 18 17 22 22 N 1.31618 * 120.00083 * 336.96862 * 21 19 18 23 23 Si 1.86807 * 120.00006 * 156.96929 * 21 19 18 24 24 H 1.48501 * 109.47152 * 180.02562 * 23 21 19 25 25 H 1.48497 * 109.46860 * 300.00232 * 23 21 19 26 26 H 1.48499 * 109.46853 * 60.00125 * 23 21 19 27 27 H 1.09000 * 109.47335 * 308.75753 * 1 2 3 28 28 H 1.08998 * 109.47290 * 68.76621 * 1 2 3 29 29 H 1.09009 * 109.46685 * 188.76322 * 1 2 3 30 30 H 1.09001 * 110.36945 * 265.19082 * 3 2 1 31 31 H 1.09004 * 110.37537 * 27.52790 * 3 2 1 32 32 H 1.09000 * 110.99165 * 81.01787 * 4 3 2 33 33 H 1.09004 * 110.98851 * 204.83694 * 4 3 2 34 34 H 1.09006 * 110.70406 * 277.27300 * 5 4 3 35 35 H 1.08990 * 110.70641 * 154.03795 * 5 4 3 36 36 H 0.96999 * 120.00326 * 359.97438 * 10 8 6 37 37 H 1.08997 * 109.47521 * 59.99804 * 11 10 8 38 38 H 1.09009 * 109.47013 * 299.99792 * 11 10 8 39 39 H 1.09004 * 109.65827 * 52.20114 * 14 12 11 40 40 H 1.08998 * 109.48531 * 292.02277 * 14 12 11 41 41 H 1.09004 * 109.51303 * 302.65231 * 16 15 14 42 42 H 1.08997 * 109.51238 * 182.49901 * 16 15 14 43 43 H 1.09000 * 109.68274 * 187.97637 * 17 16 15 44 44 H 1.09002 * 109.68075 * 67.42301 * 17 16 15 45 45 H 0.96994 * 119.99803 * 354.68305 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3047 1.3029 0.8296 5 6 2.9158 0.2823 1.9315 6 6 1.9974 -0.7056 1.1819 7 1 2.5673 -1.5800 0.8676 8 6 0.8612 -1.1290 2.0767 9 8 0.0299 -0.3179 2.4264 10 7 0.7686 -2.4090 2.4884 11 6 -0.3363 -2.8208 3.3578 12 6 -0.2068 -4.3118 3.6756 13 1 0.7375 -4.4980 4.1872 14 6 -1.3787 -4.7569 4.5651 15 8 -1.3485 -6.1795 4.7036 16 6 -1.5211 -6.8909 3.4756 17 6 -0.3622 -6.5546 2.5303 18 7 -0.2565 -5.0905 2.4280 19 6 -0.2002 -4.4714 1.2078 20 1 -0.6294 -3.4885 1.0808 21 6 0.4086 -5.1069 0.1345 22 7 1.3032 -6.0484 0.3483 23 14 -0.0417 -4.6260 -1.6136 24 1 0.7424 -5.4474 -2.5705 25 1 -1.4916 -4.8600 -1.8333 26 1 0.2657 -3.1888 -1.8263 27 1 -0.3634 0.6433 0.8014 28 1 -0.3634 0.3722 -0.9579 29 1 -0.3633 -1.0158 0.1566 30 1 2.2147 1.7038 -1.0183 31 1 1.2888 2.0593 0.4723 32 1 4.1302 0.9284 0.2243 33 1 3.5494 2.2723 1.2639 34 1 2.3743 0.7749 2.7392 35 1 3.8000 -0.2277 2.3138 36 1 1.4332 -3.0577 2.2085 37 1 -1.2843 -2.6377 2.8520 38 1 -0.3023 -2.2479 4.2846 39 1 -2.3212 -4.4557 4.1077 40 1 -1.2861 -4.2934 5.5473 41 1 -2.4641 -6.5974 3.0143 42 1 -1.5300 -7.9626 3.6739 43 1 -0.5573 -6.9783 1.5451 44 1 0.5667 -6.9628 2.9286 45 1 1.5938 -6.2449 1.2526 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050839555.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:02 Heat of formation + Delta-G solvation = -38.706937 kcal Electronic energy + Delta-G solvation = -26329.935108 eV Core-core repulsion = 22769.625909 eV Total energy + Delta-G solvation = -3560.309198 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.31994 -38.77480 -37.32154 -35.41856 -33.82221 -31.94684 -31.64068 -30.52020 -29.28447 -27.09078 -25.68801 -25.18113 -23.33515 -22.40935 -21.34857 -21.17189 -19.82804 -19.33298 -17.48644 -16.81271 -16.08866 -15.77466 -15.61264 -15.17444 -14.96777 -14.76455 -14.34304 -14.07241 -13.82248 -13.62971 -13.43814 -13.06368 -12.84779 -12.69099 -12.33481 -11.99000 -11.77620 -11.55598 -11.29450 -11.25860 -11.08467 -10.98612 -10.76729 -10.71887 -10.60725 -10.54955 -10.17207 -10.03427 -9.61630 -9.53062 -9.10905 -8.57094 -8.35205 -7.92574 -6.99111 -6.15358 -3.44220 2.99285 3.47119 3.49780 3.65140 3.72523 4.24649 4.34072 4.47192 4.63969 4.75259 4.94752 5.05405 5.27801 5.29768 5.46703 5.50105 5.52854 5.59238 5.71629 5.72716 5.78320 5.84246 5.86846 5.87149 5.93320 5.96307 5.99796 6.08415 6.11612 6.18533 6.24912 6.32659 6.40649 6.55152 6.74392 6.93752 7.06409 7.07301 7.16817 7.66997 7.91863 8.15317 8.43650 8.75614 8.90411 9.66690 10.12028 11.07938 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.015653 B = 0.005983 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.417476 B = 4678.608965 C = 5803.152650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.507 5.507 3 C 0.039 3.961 4 C -0.126 4.126 5 C -0.127 4.127 6 C 0.055 3.945 7 H 0.103 0.897 8 C 0.499 3.501 9 O -0.565 6.565 10 N -0.685 5.685 11 C 0.139 3.861 12 C 0.126 3.874 13 H 0.039 0.961 14 C 0.056 3.944 15 O -0.391 6.391 16 C 0.042 3.958 17 C 0.122 3.878 18 N -0.597 5.597 19 C -0.354 4.354 20 H 0.063 0.937 21 C -0.012 4.012 22 N -0.909 5.909 23 Si 1.053 2.947 24 H -0.286 1.286 25 H -0.295 1.295 26 H -0.282 1.282 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.415 0.585 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.084 0.916 41 H 0.045 0.955 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.027 0.973 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.415 8.676 3.523 9.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.232 5.232 3 C -0.089 4.089 4 C -0.164 4.164 5 C -0.166 4.166 6 C -0.057 4.057 7 H 0.121 0.879 8 C 0.284 3.716 9 O -0.445 6.445 10 N -0.336 5.336 11 C 0.014 3.986 12 C 0.019 3.981 13 H 0.057 0.943 14 C -0.023 4.023 15 O -0.309 6.309 16 C -0.036 4.036 17 C -0.003 4.003 18 N -0.323 5.323 19 C -0.483 4.483 20 H 0.080 0.920 21 C -0.216 4.216 22 N -0.547 5.547 23 Si 0.882 3.118 24 H -0.211 1.211 25 H -0.222 1.222 26 H -0.209 1.209 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.253 0.747 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.102 0.898 41 H 0.063 0.937 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.045 0.955 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.265 8.507 1.862 8.800 hybrid contribution -0.407 0.390 1.826 1.911 sum 0.857 8.897 3.689 9.669 Atomic orbital electron populations 1.22935 0.86856 1.03067 1.01174 1.63988 1.09312 1.13928 1.35959 1.23136 0.95543 0.89888 1.00311 1.22685 0.97875 0.99047 0.96790 1.22722 0.99067 0.96546 0.98261 1.22566 0.94508 0.99021 0.89557 0.87928 1.20844 0.87033 0.82562 0.81139 1.90594 1.43308 1.52308 1.58329 1.46104 1.28788 1.09693 1.48974 1.21091 0.90881 0.93704 0.92920 1.21507 0.96440 0.90557 0.89607 0.94341 1.22954 0.98108 0.81874 0.99381 1.87812 1.94124 1.17745 1.31239 1.23174 0.99173 0.95388 0.85877 1.21580 0.94614 0.85492 0.98660 1.44174 1.86636 1.00757 1.00774 1.19932 1.36229 1.04963 0.87143 0.91972 1.25851 0.94165 0.98138 1.03429 1.70811 1.25796 1.33574 1.24547 0.83685 0.75770 0.76351 0.76009 1.21104 1.22181 1.20861 0.91932 0.92397 0.91302 0.90156 0.93337 0.90439 0.90783 0.90715 0.90285 0.74685 0.91640 0.92554 0.93364 0.89835 0.93700 0.89999 0.90017 0.95463 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 8.18 60.07 0.49 0.62 16 2 N -0.51 -8.39 5.44 -232.94 -1.27 -9.66 16 3 C 0.04 0.51 6.73 -2.30 -0.02 0.50 16 4 C -0.13 -1.42 7.08 -24.59 -0.17 -1.59 16 5 C -0.13 -1.66 6.45 -24.91 -0.16 -1.82 16 6 C 0.05 0.89 3.84 -67.88 -0.26 0.63 16 7 H 0.10 1.72 7.95 -51.93 -0.41 1.31 16 8 C 0.50 9.21 4.95 -10.99 -0.05 9.16 16 9 O -0.56 -11.50 13.74 5.55 0.08 -11.42 16 10 N -0.68 -12.93 3.78 -60.29 -0.23 -13.15 16 11 C 0.14 2.57 4.46 -4.04 -0.02 2.55 16 12 C 0.13 2.42 3.23 -67.20 -0.22 2.20 16 13 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 14 C 0.06 0.97 6.31 37.53 0.24 1.21 16 15 O -0.39 -7.42 10.74 -35.23 -0.38 -7.79 16 16 C 0.04 0.78 6.98 37.31 0.26 1.04 16 17 C 0.12 2.66 4.92 -3.54 -0.02 2.65 16 18 N -0.60 -13.38 2.83 -164.06 -0.46 -13.85 16 19 C -0.35 -8.69 6.85 -15.06 -0.10 -8.79 16 20 H 0.06 1.59 5.96 -52.48 -0.31 1.28 16 21 C -0.01 -0.30 4.73 -17.43 -0.08 -0.39 16 22 N -0.91 -24.92 12.66 55.49 0.70 -24.21 16 23 Si 1.05 24.27 29.98 -169.99 -5.10 19.18 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 27 H 0.06 1.14 5.79 -51.93 -0.30 0.84 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 1.39 6.95 -51.92 -0.36 1.03 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.64 7.63 -51.93 -0.40 0.25 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.04 7.72 -51.93 -0.40 0.64 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.41 8.31 7.14 -40.82 -0.29 8.02 16 37 H 0.07 1.34 7.58 -51.93 -0.39 0.94 16 38 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.08 1.96 6.80 -51.93 -0.35 1.61 16 44 H 0.03 0.62 7.71 -51.93 -0.40 0.22 16 45 H 0.27 7.43 6.66 -40.82 -0.27 7.16 16 LS Contribution 342.67 15.07 5.16 5.16 Total: -1.00 -28.60 342.67 -8.95 -37.55 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -7.34 Total: 10.23 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -0.11 Total: 7.97 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -1.26 Total: -60.87 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.30 Total: -19.21 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -5.10 Total: 19.18 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.60 -8.95 -37.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050839555.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.158 kcal (2) G-P(sol) polarization free energy of solvation -28.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds