Wall clock time and date at job start Tue Mar 31 2020 03:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47847 * 110.99676 * 2 1 4 4 C 1.54904 * 104.79865 * 146.36459 * 3 2 1 5 5 C 1.55148 * 101.65020 * 322.92788 * 4 3 2 6 6 C 1.47445 * 110.99954 * 120.83549 * 2 1 3 7 7 H 1.09002 * 109.88288 * 117.17548 * 6 2 1 8 8 C 1.50701 * 109.88997 * 356.15432 * 6 2 1 9 9 O 1.21287 * 119.99955 * 308.29091 * 8 6 2 10 10 N 1.34769 * 119.99965 * 128.29247 * 8 6 2 11 11 C 1.46502 * 120.00081 * 180.02562 * 10 8 6 12 12 C 1.53006 * 109.47328 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.70813 * 60.33709 * 12 11 10 14 14 C 1.53711 * 109.74360 * 181.11074 * 12 11 10 15 15 O 1.42969 * 109.14661 * 172.15902 * 14 12 11 16 16 C 1.42959 * 114.16771 * 297.29176 * 15 14 12 17 17 C 1.53297 * 109.22301 * 62.57498 * 16 15 14 18 18 N 1.47146 * 108.38653 * 307.69777 * 17 16 15 19 19 C 1.36938 * 120.98254 * 230.50770 * 18 17 16 20 20 H 1.08005 * 119.99394 * 147.72374 * 19 18 17 21 21 C 1.38803 * 120.00193 * 327.72458 * 19 18 17 22 22 N 1.31618 * 120.00083 * 336.96862 * 21 19 18 23 23 Si 1.86807 * 120.00006 * 156.96929 * 21 19 18 24 24 H 1.48501 * 109.47152 * 180.02562 * 23 21 19 25 25 H 1.48497 * 109.46860 * 300.00232 * 23 21 19 26 26 H 1.48499 * 109.46853 * 60.00125 * 23 21 19 27 27 H 1.09000 * 109.47335 * 308.75753 * 1 2 3 28 28 H 1.08998 * 109.47290 * 68.76621 * 1 2 3 29 29 H 1.09009 * 109.46685 * 188.76322 * 1 2 3 30 30 H 1.09001 * 110.36945 * 265.19082 * 3 2 1 31 31 H 1.09004 * 110.37537 * 27.52790 * 3 2 1 32 32 H 1.09000 * 110.99165 * 81.01787 * 4 3 2 33 33 H 1.09004 * 110.98851 * 204.83694 * 4 3 2 34 34 H 1.09006 * 110.70406 * 277.27300 * 5 4 3 35 35 H 1.08990 * 110.70641 * 154.03795 * 5 4 3 36 36 H 0.96999 * 120.00326 * 359.97438 * 10 8 6 37 37 H 1.08997 * 109.47521 * 59.99804 * 11 10 8 38 38 H 1.09009 * 109.47013 * 299.99792 * 11 10 8 39 39 H 1.09004 * 109.65827 * 52.20114 * 14 12 11 40 40 H 1.08998 * 109.48531 * 292.02277 * 14 12 11 41 41 H 1.09004 * 109.51303 * 302.65231 * 16 15 14 42 42 H 1.08997 * 109.51238 * 182.49901 * 16 15 14 43 43 H 1.09000 * 109.68274 * 187.97637 * 17 16 15 44 44 H 1.09002 * 109.68075 * 67.42301 * 17 16 15 45 45 H 0.96994 * 119.99803 * 354.68305 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3047 1.3029 0.8296 5 6 2.9158 0.2823 1.9315 6 6 1.9974 -0.7056 1.1819 7 1 2.5673 -1.5800 0.8676 8 6 0.8612 -1.1290 2.0767 9 8 0.0299 -0.3179 2.4264 10 7 0.7686 -2.4090 2.4884 11 6 -0.3363 -2.8208 3.3578 12 6 -0.2068 -4.3118 3.6756 13 1 0.7375 -4.4980 4.1872 14 6 -1.3787 -4.7569 4.5651 15 8 -1.3485 -6.1795 4.7036 16 6 -1.5211 -6.8909 3.4756 17 6 -0.3622 -6.5546 2.5303 18 7 -0.2565 -5.0905 2.4280 19 6 -0.2002 -4.4714 1.2078 20 1 -0.6294 -3.4885 1.0808 21 6 0.4086 -5.1069 0.1345 22 7 1.3032 -6.0484 0.3483 23 14 -0.0417 -4.6260 -1.6136 24 1 0.7424 -5.4474 -2.5705 25 1 -1.4916 -4.8600 -1.8333 26 1 0.2657 -3.1888 -1.8263 27 1 -0.3634 0.6433 0.8014 28 1 -0.3634 0.3722 -0.9579 29 1 -0.3633 -1.0158 0.1566 30 1 2.2147 1.7038 -1.0183 31 1 1.2888 2.0593 0.4723 32 1 4.1302 0.9284 0.2243 33 1 3.5494 2.2723 1.2639 34 1 2.3743 0.7749 2.7392 35 1 3.8000 -0.2277 2.3138 36 1 1.4332 -3.0577 2.2085 37 1 -1.2843 -2.6377 2.8520 38 1 -0.3023 -2.2479 4.2846 39 1 -2.3212 -4.4557 4.1077 40 1 -1.2861 -4.2934 5.5473 41 1 -2.4641 -6.5974 3.0143 42 1 -1.5300 -7.9626 3.6739 43 1 -0.5573 -6.9783 1.5451 44 1 0.5667 -6.9628 2.9286 45 1 1.5938 -6.2449 1.2526 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050839555.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:01 Heat of formation + Delta-G solvation = -59.327059 kcal Electronic energy + Delta-G solvation = -26330.829263 eV Core-core repulsion = 22769.625909 eV Total energy + Delta-G solvation = -3561.203354 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.71028 -40.33034 -38.65913 -37.03993 -35.52730 -33.39751 -33.02867 -32.22872 -30.51287 -28.84012 -27.11575 -26.53240 -25.13041 -23.90886 -22.76977 -22.19933 -21.48787 -20.83637 -19.22801 -18.24548 -17.60091 -17.31277 -16.99377 -16.63374 -16.44370 -16.10117 -15.83564 -15.64635 -15.43135 -15.29115 -14.92348 -14.52979 -14.40611 -13.99294 -13.68701 -13.65172 -13.18998 -12.89609 -12.86001 -12.60394 -12.49332 -12.29739 -12.26572 -12.15383 -12.06407 -11.98382 -11.82895 -11.73916 -11.22400 -11.06752 -10.77250 -10.43799 -9.95203 -9.27491 -8.88612 -8.14793 -5.43015 1.53680 1.58355 1.62505 1.78560 2.27436 2.58499 2.90818 3.00951 3.18890 3.36373 3.53187 3.69314 3.80587 3.91337 4.10228 4.15898 4.21646 4.29653 4.30840 4.37578 4.43354 4.50325 4.52178 4.53837 4.59536 4.62905 4.79354 4.80625 4.84443 4.91723 4.94716 4.99423 5.04749 5.07103 5.22076 5.26027 5.54107 5.80369 5.92881 5.94864 6.17437 6.41222 6.62620 6.98603 7.23969 7.72613 8.19759 9.04832 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.015653 B = 0.005983 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.417476 B = 4678.608965 C = 5803.152650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.522 5.522 3 C 0.035 3.965 4 C -0.115 4.115 5 C -0.122 4.122 6 C 0.052 3.948 7 H 0.094 0.906 8 C 0.499 3.501 9 O -0.585 6.585 10 N -0.690 5.690 11 C 0.146 3.854 12 C 0.126 3.874 13 H 0.037 0.963 14 C 0.059 3.941 15 O -0.394 6.394 16 C 0.052 3.948 17 C 0.126 3.874 18 N -0.610 5.610 19 C -0.332 4.332 20 H 0.052 0.948 21 C -0.053 4.053 22 N -0.936 5.936 23 Si 1.089 2.911 24 H -0.294 1.294 25 H -0.290 1.290 26 H -0.277 1.277 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.035 0.965 30 H 0.097 0.903 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.409 0.591 37 H 0.044 0.956 38 H 0.077 0.923 39 H 0.048 0.952 40 H 0.118 0.882 41 H 0.045 0.955 42 H 0.110 0.890 43 H 0.054 0.946 44 H 0.014 0.986 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.682 9.992 4.224 10.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.247 5.247 3 C -0.092 4.092 4 C -0.153 4.153 5 C -0.161 4.161 6 C -0.060 4.060 7 H 0.112 0.888 8 C 0.286 3.714 9 O -0.467 6.467 10 N -0.339 5.339 11 C 0.021 3.979 12 C 0.020 3.980 13 H 0.055 0.945 14 C -0.020 4.020 15 O -0.313 6.313 16 C -0.026 4.026 17 C 0.001 3.999 18 N -0.337 5.337 19 C -0.461 4.461 20 H 0.070 0.930 21 C -0.252 4.252 22 N -0.577 5.577 23 Si 0.917 3.083 24 H -0.220 1.220 25 H -0.217 1.217 26 H -0.203 1.203 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.115 0.885 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.245 0.755 37 H 0.063 0.937 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.136 0.864 41 H 0.063 0.937 42 H 0.127 0.873 43 H 0.073 0.927 44 H 0.032 0.968 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.515 9.841 2.587 10.287 hybrid contribution -0.515 0.025 1.652 1.731 sum 1.000 9.866 4.239 10.785 Atomic orbital electron populations 1.22742 0.87868 1.00692 1.01625 1.64023 1.08426 1.16229 1.36016 1.23280 0.96324 0.87839 1.01800 1.22707 0.97027 0.99772 0.95793 1.22734 0.98807 0.96272 0.98288 1.22641 0.94034 0.99717 0.89573 0.88811 1.21258 0.87274 0.82027 0.80835 1.90578 1.44223 1.52704 1.59157 1.46145 1.28642 1.09842 1.49270 1.21033 0.89830 0.93566 0.93457 1.21637 0.97314 0.90529 0.88482 0.94533 1.23052 0.96908 0.81321 1.00719 1.87819 1.93981 1.18447 1.31016 1.23082 0.97340 0.97012 0.85121 1.21469 0.95442 0.84965 0.98050 1.44357 1.86704 1.01350 1.01325 1.19878 1.34095 1.04174 0.87987 0.93044 1.26600 0.94368 0.98463 1.05743 1.70893 1.27684 1.35380 1.23726 0.83153 0.75559 0.76104 0.73496 1.22022 1.21653 1.20301 0.92912 0.90836 0.94631 0.88488 0.93520 0.89311 0.88188 0.91584 0.88435 0.75455 0.93731 0.90452 0.93405 0.86372 0.93666 0.87250 0.92699 0.96756 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 8.18 127.69 1.04 1.71 16 2 N -0.52 -16.77 5.44 -890.88 -4.85 -21.62 16 3 C 0.03 0.83 6.73 86.77 0.58 1.42 16 4 C -0.12 -2.24 7.08 31.98 0.23 -2.01 16 5 C -0.12 -2.96 6.45 31.78 0.21 -2.75 16 6 C 0.05 1.65 3.84 44.51 0.17 1.82 16 7 H 0.09 3.14 7.95 -2.39 -0.02 3.12 16 8 C 0.50 18.46 4.95 87.66 0.43 18.89 16 9 O -0.58 -23.81 13.74 -3.05 -0.04 -23.85 16 10 N -0.69 -26.19 3.78 -463.04 -1.75 -27.94 16 11 C 0.15 5.33 4.46 86.38 0.39 5.72 16 12 C 0.13 4.77 3.23 45.11 0.15 4.91 16 13 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 14 C 0.06 1.92 6.31 72.22 0.46 2.37 16 15 O -0.39 -14.09 10.74 -148.98 -1.60 -15.69 16 16 C 0.05 1.88 6.98 72.08 0.50 2.38 16 17 C 0.13 5.54 4.92 86.36 0.43 5.97 16 18 N -0.61 -27.51 2.83 -672.95 -1.90 -29.42 16 19 C -0.33 -16.51 6.85 84.03 0.58 -15.94 16 20 H 0.05 2.68 5.96 -2.91 -0.02 2.67 16 21 C -0.05 -2.76 4.73 84.86 0.40 -2.36 16 22 N -0.94 -52.50 12.66 21.65 0.27 -52.23 16 23 Si 1.09 49.99 29.98 68.60 2.06 52.05 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 25 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 26 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 27 H 0.05 1.93 5.79 -2.39 -0.01 1.92 16 28 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.03 1.45 6.95 -2.38 -0.02 1.44 16 30 H 0.10 2.01 8.14 -2.39 -0.02 2.00 16 31 H 0.05 1.15 7.63 -2.38 -0.02 1.13 16 32 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.10 1.47 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.73 7.72 -2.38 -0.02 1.71 16 35 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.41 16.65 7.14 -92.71 -0.66 15.99 16 37 H 0.04 1.82 7.58 -2.39 -0.02 1.80 16 38 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 39 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 41 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 42 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 43 H 0.05 2.69 6.80 -2.39 -0.02 2.67 16 44 H 0.01 0.66 7.71 -2.39 -0.02 0.65 16 45 H 0.26 14.68 6.66 -92.71 -0.62 14.06 16 Total: -1.00 -61.96 342.67 -1.79 -63.75 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.47 Total: 32.81 kcal Atomic # 6 Polarization: 16.58 SS G_CDS: 5.56 Total: 22.13 kcal Atomic # 7 Polarization: -122.97 SS G_CDS: -8.23 Total: -131.20 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -1.64 Total: -39.53 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 2.06 Total: 52.05 kcal Total: -61.96 -1.79 -63.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050839555.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.419 kcal (2) G-P(sol) polarization free energy of solvation -61.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds