Wall clock time and date at job start Tue Mar 31 2020 03:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48813 * 111.17983 * 2 1 4 4 C 1.54938 * 103.34465 * 159.50464 * 3 2 1 5 5 C 1.54594 * 102.92380 * 322.68849 * 4 3 2 6 6 C 1.47899 * 111.00003 * 117.33313 * 2 1 3 7 7 H 1.09000 * 109.92051 * 333.71573 * 6 2 1 8 8 C 1.50703 * 109.91369 * 94.80426 * 6 2 1 9 9 O 1.21278 * 120.00075 * 18.19859 * 8 6 2 10 10 N 1.34776 * 119.99977 * 198.19382 * 8 6 2 11 11 C 1.46498 * 120.00131 * 180.02562 * 10 8 6 12 12 C 1.53004 * 109.47226 * 180.02562 * 11 10 8 13 13 H 1.08996 * 109.67510 * 299.80360 * 12 11 10 14 14 C 1.53298 * 109.68112 * 179.25075 * 12 11 10 15 15 O 1.42959 * 109.22086 * 187.97933 * 14 12 11 16 16 C 1.42959 * 114.17198 * 62.57830 * 15 14 12 17 17 C 1.53295 * 109.22178 * 297.42122 * 16 15 14 18 18 N 1.47144 * 109.67937 * 60.32383 * 12 11 10 19 19 C 1.36941 * 120.98400 * 350.28302 * 18 12 11 20 20 H 1.07997 * 120.00085 * 49.90919 * 19 18 12 21 21 C 1.38820 * 119.99575 * 229.91732 * 19 18 12 22 22 N 1.31625 * 119.99416 * 188.82928 * 21 19 18 23 23 Si 1.86797 * 120.00074 * 8.82533 * 21 19 18 24 24 H 1.48495 * 109.47020 * 84.32407 * 23 21 19 25 25 H 1.48505 * 109.46889 * 204.31972 * 23 21 19 26 26 H 1.48502 * 109.47425 * 324.31705 * 23 21 19 27 27 H 1.08997 * 109.47597 * 302.66153 * 1 2 3 28 28 H 1.09005 * 109.47022 * 62.66611 * 1 2 3 29 29 H 1.09003 * 109.46913 * 182.65767 * 1 2 3 30 30 H 1.08999 * 110.52172 * 41.07034 * 3 2 1 31 31 H 1.09000 * 110.84137 * 278.08968 * 3 2 1 32 32 H 1.09005 * 110.72206 * 204.33156 * 4 3 2 33 33 H 1.09000 * 110.72478 * 81.04735 * 4 3 2 34 34 H 1.08997 * 110.31124 * 263.04493 * 5 4 3 35 35 H 1.08997 * 110.31145 * 140.87337 * 5 4 3 36 36 H 0.97004 * 120.00377 * 0.02562 * 10 8 6 37 37 H 1.08990 * 109.47549 * 300.00803 * 11 10 8 38 38 H 1.09008 * 109.46800 * 60.00518 * 11 10 8 39 39 H 1.09004 * 109.51295 * 307.90229 * 14 12 11 40 40 H 1.08996 * 109.51115 * 68.05293 * 14 12 11 41 41 H 1.09000 * 109.51544 * 177.49575 * 16 15 14 42 42 H 1.08999 * 109.55139 * 57.36524 * 16 15 14 43 43 H 1.08999 * 109.67869 * 292.57784 * 17 16 15 44 44 H 1.09001 * 109.71228 * 172.04024 * 17 16 15 45 45 H 0.96994 * 119.99448 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0067 1.3876 0.0000 4 6 3.4526 1.2109 0.5278 5 6 3.2974 0.1061 1.5980 6 6 1.9990 -0.6340 1.2266 7 1 1.2743 -0.5412 2.0355 8 6 2.2938 -2.0888 0.9662 9 8 2.4079 -2.4900 -0.1726 10 7 2.4306 -2.9440 1.9989 11 6 2.7177 -4.3581 1.7458 12 6 2.8229 -5.1035 3.0779 13 1 3.6278 -4.6755 3.6753 14 6 3.1048 -6.5878 2.8180 15 8 3.0169 -7.3063 4.0508 16 6 1.7229 -7.2716 4.6576 17 6 1.3703 -5.8223 5.0116 18 7 1.5507 -4.9937 3.8089 19 6 0.5634 -4.1460 3.3825 20 1 0.2447 -4.1638 2.3508 21 6 -0.0276 -3.2635 4.2764 22 7 -1.0891 -2.5739 3.9157 23 14 0.6836 -3.0548 5.9910 24 1 1.7936 -2.0691 5.9499 25 1 -0.3762 -2.5687 6.9107 26 1 1.1988 -4.3606 6.4757 27 1 -0.3634 0.5546 0.8651 28 1 -0.3633 0.4719 -0.9130 29 1 -0.3633 -1.0266 0.0477 30 1 1.4271 2.0220 0.6707 31 1 2.0131 1.8010 -1.0085 32 1 3.8147 2.1354 0.9776 33 1 4.1176 0.8831 -0.2712 34 1 3.2095 0.5496 2.5897 35 1 4.1458 -0.5773 1.5622 36 1 2.3390 -2.6232 2.9097 37 1 1.9142 -4.7910 1.1501 38 1 3.6596 -4.4463 1.2043 39 1 2.3703 -6.9802 2.1147 40 1 4.1056 -6.7007 2.4013 41 1 1.7296 -7.8765 5.5643 42 1 0.9829 -7.6667 3.9617 43 1 2.0291 -5.4674 5.8041 44 1 0.3336 -5.7668 5.3436 45 1 -1.5023 -1.9576 4.5404 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050839556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:04 Heat of formation + Delta-G solvation = -33.932772 kcal Electronic energy + Delta-G solvation = -26171.335913 eV Core-core repulsion = 22611.233738 eV Total energy + Delta-G solvation = -3560.102175 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.69770 -38.78568 -37.36491 -35.28721 -33.46247 -32.03324 -31.75923 -31.03659 -29.15927 -27.49266 -25.58488 -25.16425 -23.35124 -22.47316 -21.35010 -21.00198 -19.98423 -19.18669 -17.12212 -16.50647 -16.01608 -15.82909 -15.65264 -15.23397 -14.93308 -14.48428 -14.27143 -14.04517 -13.77656 -13.65884 -13.46379 -13.21719 -12.78178 -12.65583 -12.24801 -12.11594 -11.88992 -11.65397 -11.57142 -11.22382 -11.15629 -10.94809 -10.88354 -10.76957 -10.76368 -10.63620 -10.26665 -9.89508 -9.59866 -9.28577 -8.99063 -8.60395 -8.11017 -8.09576 -6.73027 -6.12331 -3.76082 3.19919 3.33105 3.35688 3.38447 3.77184 4.29675 4.37161 4.45793 4.72459 4.80997 4.82513 5.07729 5.13309 5.39255 5.49001 5.52941 5.60042 5.65290 5.70321 5.72167 5.76899 5.84688 5.87791 5.91510 5.92875 5.94610 5.94809 6.10339 6.15529 6.17953 6.26516 6.32056 6.33122 6.42712 6.63022 6.78844 7.04244 7.23506 7.30794 7.62720 7.92878 8.30424 8.43623 8.76873 9.10182 9.49444 9.97386 10.99732 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.016984 B = 0.005695 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.233831 B = 4915.397164 C = 5754.860072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.497 5.497 3 C 0.035 3.965 4 C -0.120 4.120 5 C -0.119 4.119 6 C 0.048 3.952 7 H 0.080 0.920 8 C 0.523 3.477 9 O -0.544 6.544 10 N -0.694 5.694 11 C 0.143 3.857 12 C 0.124 3.876 13 H 0.044 0.956 14 C 0.055 3.945 15 O -0.390 6.390 16 C 0.042 3.958 17 C 0.102 3.898 18 N -0.606 5.606 19 C -0.264 4.264 20 H 0.079 0.921 21 C 0.045 3.955 22 N -0.899 5.899 23 Si 0.847 3.153 24 H -0.285 1.285 25 H -0.299 1.299 26 H -0.236 1.236 27 H 0.029 0.971 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.408 0.592 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.048 0.952 43 H 0.042 0.958 44 H 0.073 0.927 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.359 3.181 -1.304 8.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.221 5.221 3 C -0.093 4.093 4 C -0.158 4.158 5 C -0.158 4.158 6 C -0.064 4.064 7 H 0.098 0.902 8 C 0.308 3.692 9 O -0.421 6.421 10 N -0.346 5.346 11 C 0.018 3.982 12 C 0.017 3.983 13 H 0.062 0.938 14 C -0.024 4.024 15 O -0.308 6.308 16 C -0.036 4.036 17 C -0.023 4.023 18 N -0.333 5.333 19 C -0.393 4.393 20 H 0.096 0.904 21 C -0.158 4.158 22 N -0.539 5.539 23 Si 0.676 3.324 24 H -0.212 1.212 25 H -0.226 1.226 26 H -0.161 1.161 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.244 0.756 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.091 0.909 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.581 2.633 -2.461 8.394 hybrid contribution -0.628 0.974 2.178 2.467 sum 6.953 3.608 -0.283 7.838 Atomic orbital electron populations 1.22499 0.86990 1.03043 1.00248 1.64393 1.08448 1.13596 1.35624 1.23290 0.94934 0.90106 1.00970 1.22460 0.96891 0.98075 0.98407 1.22335 0.96624 0.97651 0.99192 1.22320 0.97715 0.93290 0.93039 0.90168 1.20099 0.76958 0.87145 0.85044 1.90605 1.50824 1.78676 1.21996 1.45849 1.70943 1.07974 1.09810 1.21009 0.99708 0.81497 0.95945 1.21564 0.90037 0.93834 0.92833 0.93841 1.22897 1.01091 0.92220 0.86158 1.87818 1.31929 1.73217 1.37846 1.23141 0.84736 0.98565 0.97116 1.22364 1.00369 0.89357 0.90181 1.44360 1.12938 1.46943 1.29063 1.18671 1.11683 1.11680 0.97250 0.90395 1.25764 0.96668 0.95262 0.98061 1.69793 1.20527 1.27591 1.35967 0.87645 0.78662 0.80510 0.85622 1.21176 1.22622 1.16085 0.95273 0.91529 0.90639 0.93835 0.89992 0.91029 0.90580 0.90757 0.90700 0.75563 0.91587 0.92547 0.93078 0.89526 0.90002 0.93366 0.94068 0.90851 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.41 60.07 0.57 0.91 16 2 N -0.50 -8.48 4.77 -231.92 -1.11 -9.58 16 3 C 0.03 0.46 6.58 -1.74 -0.01 0.45 16 4 C -0.12 -1.46 7.06 -24.87 -0.18 -1.64 16 5 C -0.12 -1.69 6.56 -25.38 -0.17 -1.85 16 6 C 0.05 0.86 2.87 -67.80 -0.19 0.66 16 7 H 0.08 1.53 7.73 -51.93 -0.40 1.13 16 8 C 0.52 10.67 6.86 -10.98 -0.08 10.59 16 9 O -0.54 -12.68 16.56 5.56 0.09 -12.58 16 10 N -0.69 -13.72 4.09 -60.29 -0.25 -13.97 16 11 C 0.14 2.68 4.51 -4.04 -0.02 2.66 16 12 C 0.12 2.27 3.21 -67.42 -0.22 2.06 16 13 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 14 C 0.06 0.91 6.29 37.31 0.23 1.14 16 15 O -0.39 -6.90 10.74 -35.23 -0.38 -7.28 16 16 C 0.04 0.73 6.99 37.31 0.26 0.99 16 17 C 0.10 2.01 4.27 -3.53 -0.02 2.00 16 18 N -0.61 -12.85 2.45 -164.30 -0.40 -13.25 16 19 C -0.26 -6.48 6.61 -15.05 -0.10 -6.58 16 20 H 0.08 2.21 7.11 -52.49 -0.37 1.83 16 21 C 0.04 1.14 5.33 -17.42 -0.09 1.04 16 22 N -0.90 -24.80 13.97 55.49 0.78 -24.02 16 23 Si 0.85 19.17 26.73 -169.99 -4.54 14.63 16 24 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.30 -7.13 7.11 56.52 0.40 -6.72 16 26 H -0.24 -4.95 3.87 56.52 0.22 -4.73 16 27 H 0.03 0.46 8.01 -51.93 -0.42 0.05 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 30 H 0.04 0.54 7.97 -51.93 -0.41 0.12 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.06 7.68 -51.93 -0.40 0.66 16 36 H 0.41 8.32 7.25 -40.82 -0.30 8.03 16 37 H 0.07 1.38 7.60 -51.93 -0.39 0.99 16 38 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.04 0.83 6.14 -51.93 -0.32 0.51 16 44 H 0.07 1.51 6.84 -51.93 -0.36 1.16 16 45 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 346.27 15.07 5.22 5.22 Total: -1.00 -29.72 346.27 -8.35 -38.07 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -7.76 Total: 10.34 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: -0.01 Total: 12.43 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: -0.98 Total: -60.82 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.29 Total: -19.86 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.54 Total: 14.63 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.72 -8.35 -38.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050839556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.137 kcal (2) G-P(sol) polarization free energy of solvation -29.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds