Wall clock time and date at job start Tue Mar 31 2020 03:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48813 * 111.17983 * 2 1 4 4 C 1.54938 * 103.34465 * 159.50464 * 3 2 1 5 5 C 1.54594 * 102.92380 * 322.68849 * 4 3 2 6 6 C 1.47899 * 111.00003 * 117.33313 * 2 1 3 7 7 H 1.09000 * 109.92051 * 333.71573 * 6 2 1 8 8 C 1.50703 * 109.91369 * 94.80426 * 6 2 1 9 9 O 1.21278 * 120.00075 * 18.19859 * 8 6 2 10 10 N 1.34776 * 119.99977 * 198.19382 * 8 6 2 11 11 C 1.46498 * 120.00131 * 180.02562 * 10 8 6 12 12 C 1.53004 * 109.47226 * 180.02562 * 11 10 8 13 13 H 1.08996 * 109.67510 * 299.80360 * 12 11 10 14 14 C 1.53298 * 109.68112 * 179.25075 * 12 11 10 15 15 O 1.42959 * 109.22086 * 187.97933 * 14 12 11 16 16 C 1.42959 * 114.17198 * 62.57830 * 15 14 12 17 17 C 1.53295 * 109.22178 * 297.42122 * 16 15 14 18 18 N 1.47144 * 109.67937 * 60.32383 * 12 11 10 19 19 C 1.36941 * 120.98400 * 350.28302 * 18 12 11 20 20 H 1.07997 * 120.00085 * 49.90919 * 19 18 12 21 21 C 1.38820 * 119.99575 * 229.91732 * 19 18 12 22 22 N 1.31625 * 119.99416 * 188.82928 * 21 19 18 23 23 Si 1.86797 * 120.00074 * 8.82533 * 21 19 18 24 24 H 1.48495 * 109.47020 * 84.32407 * 23 21 19 25 25 H 1.48505 * 109.46889 * 204.31972 * 23 21 19 26 26 H 1.48502 * 109.47425 * 324.31705 * 23 21 19 27 27 H 1.08997 * 109.47597 * 302.66153 * 1 2 3 28 28 H 1.09005 * 109.47022 * 62.66611 * 1 2 3 29 29 H 1.09003 * 109.46913 * 182.65767 * 1 2 3 30 30 H 1.08999 * 110.52172 * 41.07034 * 3 2 1 31 31 H 1.09000 * 110.84137 * 278.08968 * 3 2 1 32 32 H 1.09005 * 110.72206 * 204.33156 * 4 3 2 33 33 H 1.09000 * 110.72478 * 81.04735 * 4 3 2 34 34 H 1.08997 * 110.31124 * 263.04493 * 5 4 3 35 35 H 1.08997 * 110.31145 * 140.87337 * 5 4 3 36 36 H 0.97004 * 120.00377 * 0.02562 * 10 8 6 37 37 H 1.08990 * 109.47549 * 300.00803 * 11 10 8 38 38 H 1.09008 * 109.46800 * 60.00518 * 11 10 8 39 39 H 1.09004 * 109.51295 * 307.90229 * 14 12 11 40 40 H 1.08996 * 109.51115 * 68.05293 * 14 12 11 41 41 H 1.09000 * 109.51544 * 177.49575 * 16 15 14 42 42 H 1.08999 * 109.55139 * 57.36524 * 16 15 14 43 43 H 1.08999 * 109.67869 * 292.57784 * 17 16 15 44 44 H 1.09001 * 109.71228 * 172.04024 * 17 16 15 45 45 H 0.96994 * 119.99448 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0067 1.3876 0.0000 4 6 3.4526 1.2109 0.5278 5 6 3.2974 0.1061 1.5980 6 6 1.9990 -0.6340 1.2266 7 1 1.2743 -0.5412 2.0355 8 6 2.2938 -2.0888 0.9662 9 8 2.4079 -2.4900 -0.1726 10 7 2.4306 -2.9440 1.9989 11 6 2.7177 -4.3581 1.7458 12 6 2.8229 -5.1035 3.0779 13 1 3.6278 -4.6755 3.6753 14 6 3.1048 -6.5878 2.8180 15 8 3.0169 -7.3063 4.0508 16 6 1.7229 -7.2716 4.6576 17 6 1.3703 -5.8223 5.0116 18 7 1.5507 -4.9937 3.8089 19 6 0.5634 -4.1460 3.3825 20 1 0.2447 -4.1638 2.3508 21 6 -0.0276 -3.2635 4.2764 22 7 -1.0891 -2.5739 3.9157 23 14 0.6836 -3.0548 5.9910 24 1 1.7936 -2.0691 5.9499 25 1 -0.3762 -2.5687 6.9107 26 1 1.1988 -4.3606 6.4757 27 1 -0.3634 0.5546 0.8651 28 1 -0.3633 0.4719 -0.9130 29 1 -0.3633 -1.0266 0.0477 30 1 1.4271 2.0220 0.6707 31 1 2.0131 1.8010 -1.0085 32 1 3.8147 2.1354 0.9776 33 1 4.1176 0.8831 -0.2712 34 1 3.2095 0.5496 2.5897 35 1 4.1458 -0.5773 1.5622 36 1 2.3390 -2.6232 2.9097 37 1 1.9142 -4.7910 1.1501 38 1 3.6596 -4.4463 1.2043 39 1 2.3703 -6.9802 2.1147 40 1 4.1056 -6.7007 2.4013 41 1 1.7296 -7.8765 5.5643 42 1 0.9829 -7.6667 3.9617 43 1 2.0291 -5.4674 5.8041 44 1 0.3336 -5.7668 5.3436 45 1 -1.5023 -1.9576 4.5404 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050839556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:03 Heat of formation + Delta-G solvation = -56.458682 kcal Electronic energy + Delta-G solvation = -26172.312710 eV Core-core repulsion = 22611.233738 eV Total energy + Delta-G solvation = -3561.078972 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.18468 -40.23563 -38.79254 -36.89862 -35.17395 -33.68221 -33.18575 -32.55628 -30.44113 -29.16379 -26.96380 -26.54069 -25.09584 -23.94774 -22.76937 -22.07983 -21.62393 -20.73521 -18.81168 -18.10787 -17.56542 -17.34317 -16.96617 -16.74476 -16.47673 -15.96859 -15.75815 -15.56792 -15.29812 -15.06866 -14.80077 -14.64715 -14.51468 -14.21431 -13.82175 -13.47582 -13.45274 -13.07011 -12.90928 -12.76883 -12.53585 -12.42306 -12.31161 -12.24711 -12.07970 -12.01579 -11.72281 -11.38224 -11.32769 -10.91670 -10.60256 -10.41087 -9.79278 -9.42714 -8.50084 -8.12368 -5.75603 1.38876 1.47973 1.53045 1.77881 2.30757 2.46484 2.92035 3.10112 3.15702 3.20799 3.62353 3.65371 3.91546 4.00108 4.10004 4.21610 4.26985 4.29494 4.36545 4.40362 4.45050 4.46018 4.58220 4.59558 4.63990 4.71472 4.76364 4.82586 4.83209 4.89868 4.97441 4.97589 5.05626 5.07443 5.23817 5.25749 5.66719 5.77975 5.96914 5.99880 6.24304 6.29664 6.78519 6.93554 7.46011 7.54685 8.06491 9.02550 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.016984 B = 0.005695 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.233831 B = 4915.397164 C = 5754.860072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.519 5.519 3 C 0.033 3.967 4 C -0.112 4.112 5 C -0.117 4.117 6 C 0.050 3.950 7 H 0.058 0.942 8 C 0.517 3.483 9 O -0.579 6.579 10 N -0.693 5.693 11 C 0.146 3.854 12 C 0.125 3.875 13 H 0.058 0.942 14 C 0.059 3.941 15 O -0.391 6.391 16 C 0.049 3.951 17 C 0.097 3.903 18 N -0.617 5.617 19 C -0.238 4.238 20 H 0.029 0.971 21 C 0.000 4.000 22 N -0.945 5.945 23 Si 0.900 3.100 24 H -0.282 1.282 25 H -0.316 1.316 26 H -0.205 1.205 27 H 0.031 0.969 28 H 0.090 0.910 29 H 0.035 0.965 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.405 0.595 37 H 0.035 0.965 38 H 0.079 0.921 39 H 0.044 0.956 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.043 0.957 43 H 0.049 0.951 44 H 0.061 0.939 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.850 3.338 -0.142 10.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.244 5.244 3 C -0.094 4.094 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.063 4.063 7 H 0.076 0.924 8 C 0.303 3.697 9 O -0.459 6.459 10 N -0.343 5.343 11 C 0.022 3.978 12 C 0.020 3.980 13 H 0.075 0.925 14 C -0.020 4.020 15 O -0.309 6.309 16 C -0.029 4.029 17 C -0.028 4.028 18 N -0.345 5.345 19 C -0.368 4.368 20 H 0.047 0.953 21 C -0.198 4.198 22 N -0.588 5.588 23 Si 0.728 3.272 24 H -0.208 1.208 25 H -0.244 1.244 26 H -0.128 1.128 27 H 0.049 0.951 28 H 0.109 0.891 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.124 0.876 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.241 0.759 37 H 0.053 0.947 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.139 0.861 41 H 0.133 0.867 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.110 2.756 -1.289 10.558 hybrid contribution -1.439 0.861 1.715 2.399 sum 8.671 3.617 0.426 9.405 Atomic orbital electron populations 1.22395 0.87370 1.00756 1.01581 1.64382 1.08356 1.16327 1.35289 1.23442 0.95540 0.87953 1.02437 1.22486 0.96091 0.98663 0.97694 1.22387 0.94281 0.97996 1.00851 1.22299 0.99187 0.92053 0.92729 0.92415 1.20685 0.76006 0.88450 0.84529 1.90569 1.52604 1.79525 1.23191 1.45892 1.70482 1.08415 1.09533 1.21027 0.99535 0.80991 0.96295 1.21694 0.88802 0.95475 0.92049 0.92479 1.22955 1.02900 0.90240 0.85858 1.87832 1.31968 1.73066 1.38049 1.23118 0.84529 0.96866 0.98382 1.22420 0.99904 0.90968 0.89462 1.44441 1.13325 1.46919 1.29778 1.18194 1.11811 1.11749 0.95017 0.95325 1.26264 0.96788 0.95150 1.01555 1.69944 1.22467 1.29104 1.37265 0.86808 0.77478 0.81765 0.81178 1.20819 1.24415 1.12837 0.95062 0.89093 0.94615 0.92652 0.88354 0.87644 0.90759 0.89050 0.90798 0.75909 0.94694 0.90276 0.93783 0.86087 0.86702 0.93891 0.93326 0.92094 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 9.41 127.69 1.20 2.15 16 2 N -0.52 -17.83 4.77 -887.65 -4.23 -22.06 16 3 C 0.03 0.81 6.58 86.59 0.57 1.38 16 4 C -0.11 -2.41 7.06 31.80 0.22 -2.19 16 5 C -0.12 -3.13 6.56 31.47 0.21 -2.92 16 6 C 0.05 1.79 2.87 44.31 0.13 1.91 16 7 H 0.06 2.32 7.73 -2.39 -0.02 2.30 16 8 C 0.52 21.83 6.86 87.66 0.60 22.44 16 9 O -0.58 -27.96 16.56 -3.02 -0.05 -28.01 16 10 N -0.69 -28.08 4.09 -463.06 -1.90 -29.98 16 11 C 0.15 5.51 4.51 86.38 0.39 5.90 16 12 C 0.13 4.43 3.21 44.97 0.14 4.57 16 13 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 14 C 0.06 1.79 6.29 72.08 0.45 2.25 16 15 O -0.39 -12.50 10.74 -148.98 -1.60 -14.10 16 16 C 0.05 1.53 6.99 72.08 0.50 2.03 16 17 C 0.10 3.61 4.27 86.35 0.37 3.98 16 18 N -0.62 -25.78 2.45 -673.72 -1.65 -27.43 16 19 C -0.24 -12.03 6.61 84.03 0.56 -11.47 16 20 H 0.03 1.75 7.11 -2.91 -0.02 1.73 16 21 C 0.00 0.02 5.33 84.86 0.45 0.47 16 22 N -0.95 -54.44 13.97 21.65 0.30 -54.14 16 23 Si 0.90 39.42 26.73 68.60 1.83 41.26 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 25 H -0.32 -14.72 7.11 99.48 0.71 -14.01 16 26 H -0.20 -7.89 3.87 99.48 0.39 -7.51 16 27 H 0.03 1.03 8.01 -2.39 -0.02 1.01 16 28 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 29 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 1.24 7.97 -2.39 -0.02 1.22 16 31 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.07 1.99 7.68 -2.39 -0.02 1.97 16 36 H 0.40 16.80 7.25 -92.71 -0.67 16.13 16 37 H 0.03 1.53 7.60 -2.39 -0.02 1.51 16 38 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 39 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 41 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 42 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.05 1.78 6.14 -2.39 -0.01 1.76 16 44 H 0.06 2.42 6.84 -2.39 -0.02 2.40 16 45 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -67.24 346.27 -1.51 -68.75 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: -0.02 Total: 35.21 kcal Atomic # 6 Polarization: 24.70 SS G_CDS: 5.80 Total: 30.49 kcal Atomic # 7 Polarization: -126.13 SS G_CDS: -7.47 Total: -133.60 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -1.65 Total: -42.11 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 1.83 Total: 41.26 kcal Total: -67.24 -1.51 -68.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050839556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.291 kcal (2) G-P(sol) polarization free energy of solvation -67.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds