Wall clock time and date at job start Tue Mar 31 2020 03:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47890 * 111.01436 * 2 1 4 4 C 1.54913 * 104.77214 * 146.33234 * 3 2 1 5 5 C 1.55141 * 101.68621 * 322.98384 * 4 3 2 6 6 H 1.08994 * 110.70610 * 277.24774 * 5 4 3 7 7 C 1.50701 * 110.70292 * 154.18956 * 5 4 3 8 8 O 1.21284 * 120.00188 * 354.37898 * 7 5 4 9 9 N 1.34777 * 119.99912 * 174.37060 * 7 5 4 10 10 C 1.46504 * 120.00253 * 184.88384 * 9 7 5 11 11 C 1.52996 * 109.47217 * 184.94570 * 10 9 7 12 12 H 1.09001 * 109.67661 * 299.96770 * 11 10 9 13 13 C 1.53297 * 109.68264 * 179.41330 * 11 10 9 14 14 O 1.42963 * 109.22496 * 187.97354 * 13 11 10 15 15 C 1.42963 * 114.16474 * 62.57706 * 14 13 11 16 16 C 1.53289 * 109.22343 * 297.42197 * 15 14 13 17 17 N 1.47149 * 109.68430 * 60.48359 * 11 10 9 18 18 C 1.36933 * 120.98133 * 350.28118 * 17 11 10 19 19 H 1.08002 * 120.00083 * 34.75725 * 18 17 11 20 20 C 1.38812 * 120.00165 * 214.75383 * 18 17 11 21 21 N 1.31616 * 120.00003 * 6.48329 * 20 18 17 22 22 Si 1.86803 * 119.99950 * 186.48303 * 20 18 17 23 23 H 1.48497 * 109.47239 * 5.17001 * 22 20 18 24 24 H 1.48494 * 109.47024 * 125.17448 * 22 20 18 25 25 H 1.48504 * 109.46809 * 245.17182 * 22 20 18 26 26 C 1.47436 * 111.00522 * 120.88275 * 2 1 3 27 27 H 1.09004 * 109.47064 * 299.11492 * 1 2 3 28 28 H 1.09001 * 109.47490 * 59.12131 * 1 2 3 29 29 H 1.09001 * 109.47140 * 179.11847 * 1 2 3 30 30 H 1.08991 * 110.35573 * 27.52949 * 3 2 1 31 31 H 1.08994 * 110.41152 * 265.16576 * 3 2 1 32 32 H 1.08996 * 110.98810 * 204.87227 * 4 3 2 33 33 H 1.08999 * 110.99103 * 81.09289 * 4 3 2 34 34 H 0.97005 * 120.00097 * 4.89227 * 9 7 5 35 35 H 1.08997 * 109.46970 * 304.94416 * 10 9 7 36 36 H 1.09000 * 109.46592 * 64.94761 * 10 9 7 37 37 H 1.09001 * 109.51051 * 307.90068 * 13 11 10 38 38 H 1.09006 * 109.51045 * 68.04812 * 13 11 10 39 39 H 1.09001 * 109.51095 * 177.49358 * 15 14 13 40 40 H 1.09001 * 109.51363 * 57.34470 * 15 14 13 41 41 H 1.08999 * 109.68691 * 292.57388 * 16 15 14 42 42 H 1.09004 * 109.71502 * 172.04451 * 16 15 14 43 43 H 0.96997 * 120.00177 * 179.97438 * 21 20 18 44 44 H 1.09006 * 109.89171 * 117.33191 * 26 2 1 45 45 H 1.09010 * 109.88627 * 356.14874 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3805 0.0000 4 6 3.3047 1.3022 0.8304 5 6 2.9158 0.2809 1.9316 6 1 2.3745 0.7728 2.7396 7 6 4.1388 -0.4217 2.4624 8 8 5.2208 -0.2260 1.9505 9 7 4.0303 -1.2674 3.5063 10 6 5.2321 -1.8676 4.0908 11 6 4.8265 -2.8737 5.1697 12 1 4.2602 -2.3661 5.9506 13 6 6.0803 -3.5156 5.7746 14 8 5.6907 -4.5817 6.6439 15 6 5.0024 -5.6495 5.9884 16 6 3.6934 -5.1168 5.3945 17 7 4.0032 -3.9367 4.5719 18 6 3.5395 -3.8312 3.2878 19 1 4.1428 -3.3472 2.5339 20 6 2.2942 -4.3462 2.9550 21 7 1.5056 -4.8209 3.8957 22 14 1.7377 -4.3656 1.1719 23 1 2.8460 -3.8961 0.3022 24 1 1.3582 -5.7487 0.7868 25 1 0.5663 -3.4674 1.0092 26 6 1.9974 -0.7065 1.1812 27 1 -0.3633 0.5000 0.8978 28 1 -0.3634 0.5274 -0.8820 29 1 -0.3633 -1.0276 -0.0158 30 1 1.2894 2.0594 0.4723 31 1 2.2160 1.7045 -1.0179 32 1 3.5494 2.2712 1.2654 33 1 4.1306 0.9284 0.2252 34 1 3.1564 -1.4787 3.8705 35 1 5.7985 -2.3785 3.3122 36 1 5.8487 -1.0866 4.5356 37 1 6.7096 -3.9085 4.9760 38 1 6.6349 -2.7677 6.3415 39 1 4.7814 -6.4369 6.7090 40 1 5.6276 -6.0502 5.1905 41 1 3.0131 -4.8356 6.1984 42 1 3.2312 -5.8853 4.7748 43 1 0.6352 -5.1804 3.6632 44 1 2.5698 -1.5791 0.8662 45 1 1.1755 -1.0132 1.8283 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051240588.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:31 Heat of formation + Delta-G solvation = -45.316168 kcal Electronic energy + Delta-G solvation = -26172.081206 eV Core-core repulsion = 22611.485410 eV Total energy + Delta-G solvation = -3560.595796 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.87115 -38.61150 -37.70015 -35.30437 -33.57192 -32.14619 -31.46537 -30.47237 -29.01391 -27.20102 -26.03332 -25.13816 -23.46947 -22.24243 -21.36918 -20.89302 -19.78774 -19.33789 -17.25528 -16.46582 -16.08458 -15.76958 -15.71636 -15.08895 -14.63442 -14.50258 -14.37392 -14.05843 -13.83179 -13.60039 -13.31098 -13.26310 -12.93306 -12.65776 -12.43058 -11.87645 -11.74361 -11.60211 -11.54101 -11.21125 -11.06447 -10.96231 -10.83081 -10.71820 -10.65796 -10.41397 -10.19979 -10.10690 -9.67466 -9.35344 -8.97275 -8.69907 -8.29024 -8.22736 -6.69749 -5.93084 -3.46450 3.13111 3.25523 3.36543 3.42149 3.74254 4.09386 4.32229 4.51764 4.64279 4.83168 5.07030 5.15597 5.25108 5.35059 5.38547 5.46607 5.49083 5.55197 5.58757 5.71574 5.72113 5.84152 5.91036 5.94655 5.99994 6.02754 6.10907 6.14475 6.22893 6.26294 6.31743 6.38883 6.50829 6.74522 6.98900 7.05234 7.10258 7.12379 7.46992 7.70317 7.85002 8.20010 8.29944 8.81682 9.04399 9.63068 10.24371 11.13191 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.016645 B = 0.006061 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.764633 B = 4618.399482 C = 5921.696385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.534 5.534 3 C 0.041 3.959 4 C -0.109 4.109 5 C -0.130 4.130 6 H 0.095 0.905 7 C 0.521 3.479 8 O -0.559 6.559 9 N -0.692 5.692 10 C 0.135 3.865 11 C 0.125 3.875 12 H 0.040 0.960 13 C 0.056 3.944 14 O -0.393 6.393 15 C 0.034 3.966 16 C 0.145 3.855 17 N -0.590 5.590 18 C -0.251 4.251 19 H 0.071 0.929 20 C 0.014 3.986 21 N -0.900 5.900 22 Si 0.888 3.112 23 H -0.272 1.272 24 H -0.292 1.292 25 H -0.283 1.283 26 C 0.053 3.947 27 H 0.027 0.973 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.413 0.587 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.040 0.960 41 H 0.029 0.971 42 H 0.090 0.910 43 H 0.255 0.745 44 H 0.086 0.914 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.290 8.400 -0.987 8.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.258 5.258 3 C -0.087 4.087 4 C -0.147 4.147 5 C -0.152 4.152 6 H 0.113 0.887 7 C 0.306 3.694 8 O -0.438 6.438 9 N -0.342 5.342 10 C 0.011 3.989 11 C 0.018 3.982 12 H 0.058 0.942 13 C -0.023 4.023 14 O -0.311 6.311 15 C -0.043 4.043 16 C 0.019 3.981 17 N -0.316 5.316 18 C -0.381 4.381 19 H 0.089 0.911 20 C -0.186 4.186 21 N -0.543 5.543 22 Si 0.718 3.282 23 H -0.197 1.197 24 H -0.219 1.219 25 H -0.209 1.209 26 C -0.075 4.075 27 H 0.046 0.954 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.250 0.750 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.047 0.953 42 H 0.108 0.892 43 H 0.065 0.935 44 H 0.105 0.895 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.063 8.197 -1.602 8.420 hybrid contribution -1.349 0.037 -0.244 1.372 sum -0.286 8.234 -1.847 8.443 Atomic orbital electron populations 1.22560 0.87709 1.02350 1.00315 1.63561 1.07912 1.14202 1.40152 1.23104 0.95561 0.89434 1.00573 1.22601 0.98044 0.98136 0.95911 1.22520 0.95951 0.97626 0.99145 0.88706 1.20094 0.89782 0.79594 0.79968 1.90628 1.28977 1.65338 1.58862 1.45918 1.11231 1.44123 1.32907 1.21162 0.87324 0.94513 0.95902 1.21436 0.92835 0.90096 0.93857 0.94212 1.22868 0.95961 0.89793 0.93696 1.87799 1.76648 1.31059 1.35625 1.23357 0.95819 0.88836 0.96333 1.21397 0.91562 0.90760 0.94332 1.44049 1.60073 1.15299 1.12180 1.19202 0.97530 1.36235 0.85117 0.91145 1.25212 0.95644 1.00747 0.97005 1.69962 1.09571 1.43942 1.30823 0.86500 0.79098 0.77458 0.85185 1.19728 1.21852 1.20947 1.22846 0.97646 0.96864 0.90099 0.95411 0.91477 0.91263 0.93633 0.90075 0.90685 0.89015 0.75008 0.91285 0.92623 0.93512 0.89971 0.90272 0.94131 0.95251 0.89178 0.93522 0.89537 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.12 60.06 0.55 0.80 16 2 N -0.53 -8.16 5.44 -239.48 -1.30 -9.47 16 3 C 0.04 0.51 6.73 -2.27 -0.02 0.50 16 4 C -0.11 -1.50 6.22 -24.59 -0.15 -1.66 16 5 C -0.13 -2.01 3.33 -89.95 -0.30 -2.31 16 6 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 7 C 0.52 9.59 7.00 -10.98 -0.08 9.51 16 8 O -0.56 -11.80 15.65 5.55 0.09 -11.71 16 9 N -0.69 -12.76 3.69 -60.29 -0.22 -12.98 16 10 C 0.14 2.47 4.48 -4.04 -0.02 2.45 16 11 C 0.12 2.40 3.20 -67.42 -0.22 2.18 16 12 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 13 C 0.06 0.98 6.29 37.31 0.23 1.21 16 14 O -0.39 -7.58 10.74 -35.23 -0.38 -7.96 16 15 C 0.03 0.66 6.98 37.31 0.26 0.92 16 16 C 0.14 3.25 5.35 -3.54 -0.02 3.23 16 17 N -0.59 -13.36 3.02 -164.31 -0.50 -13.86 16 18 C -0.25 -6.12 7.00 -15.06 -0.11 -6.22 16 19 H 0.07 1.79 5.99 -52.49 -0.31 1.47 16 20 C 0.01 0.34 5.13 -17.43 -0.09 0.25 16 21 N -0.90 -23.78 11.17 55.49 0.62 -23.16 16 22 Si 0.89 20.63 27.63 -169.99 -4.70 15.94 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C 0.05 0.91 6.20 -2.84 -0.02 0.89 16 27 H 0.03 0.33 8.11 -51.93 -0.42 -0.09 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.50 7.78 -51.93 -0.40 0.10 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 1.46 7.33 -51.93 -0.38 1.08 16 34 H 0.41 7.88 7.56 -40.82 -0.31 7.57 16 35 H 0.07 1.40 7.52 -51.93 -0.39 1.01 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.09 2.23 6.47 -51.93 -0.34 1.89 16 43 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 44 H 0.09 1.74 6.07 -51.93 -0.32 1.43 16 45 H 0.07 1.14 7.58 -51.92 -0.39 0.75 16 LS Contribution 346.12 15.07 5.22 5.22 Total: -1.00 -28.51 346.12 -8.61 -37.12 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -7.47 Total: 9.09 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: 0.03 Total: 11.77 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: -1.40 Total: -59.47 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.29 Total: -19.67 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.70 Total: 15.94 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.51 -8.61 -37.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051240588.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.194 kcal (2) G-P(sol) polarization free energy of solvation -28.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds