Wall clock time and date at job start Tue Mar 31 2020 03:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47890 * 111.01436 * 2 1 4 4 C 1.54913 * 104.77214 * 146.33234 * 3 2 1 5 5 C 1.55141 * 101.68621 * 322.98384 * 4 3 2 6 6 H 1.08994 * 110.70610 * 277.24774 * 5 4 3 7 7 C 1.50701 * 110.70292 * 154.18956 * 5 4 3 8 8 O 1.21284 * 120.00188 * 354.37898 * 7 5 4 9 9 N 1.34777 * 119.99912 * 174.37060 * 7 5 4 10 10 C 1.46504 * 120.00253 * 184.88384 * 9 7 5 11 11 C 1.52996 * 109.47217 * 184.94570 * 10 9 7 12 12 H 1.09001 * 109.67661 * 299.96770 * 11 10 9 13 13 C 1.53297 * 109.68264 * 179.41330 * 11 10 9 14 14 O 1.42963 * 109.22496 * 187.97354 * 13 11 10 15 15 C 1.42963 * 114.16474 * 62.57706 * 14 13 11 16 16 C 1.53289 * 109.22343 * 297.42197 * 15 14 13 17 17 N 1.47149 * 109.68430 * 60.48359 * 11 10 9 18 18 C 1.36933 * 120.98133 * 350.28118 * 17 11 10 19 19 H 1.08002 * 120.00083 * 34.75725 * 18 17 11 20 20 C 1.38812 * 120.00165 * 214.75383 * 18 17 11 21 21 N 1.31616 * 120.00003 * 6.48329 * 20 18 17 22 22 Si 1.86803 * 119.99950 * 186.48303 * 20 18 17 23 23 H 1.48497 * 109.47239 * 5.17001 * 22 20 18 24 24 H 1.48494 * 109.47024 * 125.17448 * 22 20 18 25 25 H 1.48504 * 109.46809 * 245.17182 * 22 20 18 26 26 C 1.47436 * 111.00522 * 120.88275 * 2 1 3 27 27 H 1.09004 * 109.47064 * 299.11492 * 1 2 3 28 28 H 1.09001 * 109.47490 * 59.12131 * 1 2 3 29 29 H 1.09001 * 109.47140 * 179.11847 * 1 2 3 30 30 H 1.08991 * 110.35573 * 27.52949 * 3 2 1 31 31 H 1.08994 * 110.41152 * 265.16576 * 3 2 1 32 32 H 1.08996 * 110.98810 * 204.87227 * 4 3 2 33 33 H 1.08999 * 110.99103 * 81.09289 * 4 3 2 34 34 H 0.97005 * 120.00097 * 4.89227 * 9 7 5 35 35 H 1.08997 * 109.46970 * 304.94416 * 10 9 7 36 36 H 1.09000 * 109.46592 * 64.94761 * 10 9 7 37 37 H 1.09001 * 109.51051 * 307.90068 * 13 11 10 38 38 H 1.09006 * 109.51045 * 68.04812 * 13 11 10 39 39 H 1.09001 * 109.51095 * 177.49358 * 15 14 13 40 40 H 1.09001 * 109.51363 * 57.34470 * 15 14 13 41 41 H 1.08999 * 109.68691 * 292.57388 * 16 15 14 42 42 H 1.09004 * 109.71502 * 172.04451 * 16 15 14 43 43 H 0.96997 * 120.00177 * 179.97438 * 21 20 18 44 44 H 1.09006 * 109.89171 * 117.33191 * 26 2 1 45 45 H 1.09010 * 109.88627 * 356.14874 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3805 0.0000 4 6 3.3047 1.3022 0.8304 5 6 2.9158 0.2809 1.9316 6 1 2.3745 0.7728 2.7396 7 6 4.1388 -0.4217 2.4624 8 8 5.2208 -0.2260 1.9505 9 7 4.0303 -1.2674 3.5063 10 6 5.2321 -1.8676 4.0908 11 6 4.8265 -2.8737 5.1697 12 1 4.2602 -2.3661 5.9506 13 6 6.0803 -3.5156 5.7746 14 8 5.6907 -4.5817 6.6439 15 6 5.0024 -5.6495 5.9884 16 6 3.6934 -5.1168 5.3945 17 7 4.0032 -3.9367 4.5719 18 6 3.5395 -3.8312 3.2878 19 1 4.1428 -3.3472 2.5339 20 6 2.2942 -4.3462 2.9550 21 7 1.5056 -4.8209 3.8957 22 14 1.7377 -4.3656 1.1719 23 1 2.8460 -3.8961 0.3022 24 1 1.3582 -5.7487 0.7868 25 1 0.5663 -3.4674 1.0092 26 6 1.9974 -0.7065 1.1812 27 1 -0.3633 0.5000 0.8978 28 1 -0.3634 0.5274 -0.8820 29 1 -0.3633 -1.0276 -0.0158 30 1 1.2894 2.0594 0.4723 31 1 2.2160 1.7045 -1.0179 32 1 3.5494 2.2712 1.2654 33 1 4.1306 0.9284 0.2252 34 1 3.1564 -1.4787 3.8705 35 1 5.7985 -2.3785 3.3122 36 1 5.8487 -1.0866 4.5356 37 1 6.7096 -3.9085 4.9760 38 1 6.6349 -2.7677 6.3415 39 1 4.7814 -6.4369 6.7090 40 1 5.6276 -6.0502 5.1905 41 1 3.0131 -4.8356 6.1984 42 1 3.2312 -5.8853 4.7748 43 1 0.6352 -5.1804 3.6632 44 1 2.5698 -1.5791 0.8662 45 1 1.1755 -1.0132 1.8283 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051240588.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:31 Heat of formation + Delta-G solvation = -66.400772 kcal Electronic energy + Delta-G solvation = -26172.995503 eV Core-core repulsion = 22611.485410 eV Total energy + Delta-G solvation = -3561.510093 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.26535 -40.12635 -39.04451 -36.91975 -35.29412 -33.52004 -32.99591 -32.12657 -30.21549 -28.96156 -27.35925 -26.44247 -25.24104 -23.70870 -22.81789 -21.99975 -21.44105 -20.79542 -18.84811 -18.02238 -17.62016 -17.29578 -17.08353 -16.52162 -16.25551 -16.09186 -15.83341 -15.42456 -15.37444 -14.96183 -14.89801 -14.54897 -14.46220 -14.26527 -13.70817 -13.40276 -13.09525 -13.00714 -12.92213 -12.78643 -12.55080 -12.46667 -12.27410 -12.17594 -12.09630 -11.99064 -11.90835 -11.77337 -11.30541 -10.88785 -10.61655 -10.56226 -9.83791 -9.38291 -8.57110 -7.89071 -5.42825 1.34398 1.43096 1.50366 1.67183 2.32258 2.42694 2.97188 3.03805 3.28036 3.42959 3.48123 3.63244 3.88036 4.04064 4.17602 4.26153 4.27509 4.32181 4.35871 4.39836 4.48018 4.49423 4.60876 4.62380 4.65368 4.66618 4.75889 4.82400 4.91611 4.96743 5.00328 5.02437 5.12300 5.23272 5.30468 5.58765 5.64683 5.68958 5.84597 6.05220 6.30149 6.38607 6.69481 7.11215 7.32805 7.74963 8.32920 9.15032 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.016645 B = 0.006061 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.764633 B = 4618.399482 C = 5921.696385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.555 5.555 3 C 0.046 3.954 4 C -0.105 4.105 5 C -0.125 4.125 6 H 0.122 0.878 7 C 0.518 3.482 8 O -0.588 6.588 9 N -0.693 5.693 10 C 0.141 3.859 11 C 0.126 3.874 12 H 0.040 0.960 13 C 0.057 3.943 14 O -0.397 6.397 15 C 0.046 3.954 16 C 0.150 3.850 17 N -0.604 5.604 18 C -0.234 4.234 19 H 0.059 0.941 20 C -0.019 4.019 21 N -0.922 5.922 22 Si 0.930 3.070 23 H -0.284 1.284 24 H -0.302 1.302 25 H -0.275 1.275 26 C 0.059 3.941 27 H 0.040 0.960 28 H 0.090 0.910 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.410 0.590 35 H 0.046 0.954 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.042 0.958 41 H 0.009 0.991 42 H 0.062 0.938 43 H 0.250 0.750 44 H 0.047 0.953 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.508 10.233 -0.546 10.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.280 5.280 3 C -0.080 4.080 4 C -0.143 4.143 5 C -0.147 4.147 6 H 0.140 0.860 7 C 0.305 3.695 8 O -0.470 6.470 9 N -0.342 5.342 10 C 0.016 3.984 11 C 0.020 3.980 12 H 0.058 0.942 13 C -0.021 4.021 14 O -0.315 6.315 15 C -0.032 4.032 16 C 0.024 3.976 17 N -0.330 5.330 18 C -0.364 4.364 19 H 0.077 0.923 20 C -0.216 4.216 21 N -0.568 5.568 22 Si 0.761 3.239 23 H -0.210 1.210 24 H -0.230 1.230 25 H -0.201 1.201 26 C -0.070 4.070 27 H 0.059 0.941 28 H 0.109 0.891 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.084 0.916 34 H 0.246 0.754 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.065 0.935 38 H 0.137 0.863 39 H 0.122 0.878 40 H 0.060 0.940 41 H 0.027 0.973 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.288 10.046 -1.155 10.194 hybrid contribution -1.359 -0.517 -0.395 1.507 sum -0.071 9.529 -1.550 9.655 Atomic orbital electron populations 1.22590 0.86362 1.01825 1.02079 1.63511 1.09339 1.15923 1.39207 1.23167 0.95094 0.88340 1.01427 1.22593 0.97939 0.98541 0.95208 1.22563 0.94461 0.97488 1.00217 0.85970 1.20611 0.90370 0.79227 0.79332 1.90610 1.30422 1.66354 1.59584 1.45965 1.11070 1.44073 1.33065 1.21130 0.87360 0.94888 0.94994 1.21570 0.93064 0.89476 0.93900 0.94219 1.22995 0.95016 0.90016 0.94102 1.87805 1.76350 1.31337 1.36055 1.23217 0.93751 0.89278 0.96958 1.21224 0.93002 0.90130 0.93194 1.44237 1.60364 1.16614 1.11806 1.19110 0.96843 1.34626 0.85828 0.92318 1.25523 0.96023 1.01467 0.98592 1.70054 1.09695 1.45416 1.31624 0.85857 0.78573 0.76584 0.82890 1.21015 1.22969 1.20140 1.22625 0.97225 0.96342 0.90788 0.94109 0.89124 0.93037 0.91073 0.88759 0.88212 0.91599 0.75375 0.93535 0.89980 0.93526 0.86329 0.87756 0.94007 0.97279 0.91917 0.94026 0.93491 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.12 127.69 1.16 1.64 16 2 N -0.56 -16.13 5.44 -911.59 -4.96 -21.09 16 3 C 0.05 1.04 6.73 86.77 0.58 1.62 16 4 C -0.10 -2.68 6.22 31.98 0.20 -2.49 16 5 C -0.13 -3.70 3.33 -10.36 -0.03 -3.73 16 6 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 7 C 0.52 18.86 7.00 87.66 0.61 19.47 16 8 O -0.59 -24.78 15.65 -3.04 -0.05 -24.83 16 9 N -0.69 -25.29 3.69 -463.06 -1.71 -27.00 16 10 C 0.14 5.01 4.48 86.38 0.39 5.40 16 11 C 0.13 4.70 3.20 44.97 0.14 4.84 16 12 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 13 C 0.06 1.87 6.29 72.08 0.45 2.32 16 14 O -0.40 -14.40 10.74 -148.98 -1.60 -16.00 16 15 C 0.05 1.69 6.98 72.08 0.50 2.19 16 16 C 0.15 6.76 5.35 86.35 0.46 7.22 16 17 N -0.60 -27.37 3.02 -673.75 -2.03 -29.41 16 18 C -0.23 -11.55 7.00 84.03 0.59 -10.96 16 19 H 0.06 3.05 5.99 -2.91 -0.02 3.04 16 20 C -0.02 -0.97 5.13 84.86 0.44 -0.54 16 21 N -0.92 -49.79 11.17 21.65 0.24 -49.55 16 22 Si 0.93 43.75 27.63 68.60 1.90 45.65 16 23 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 24 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 26 C 0.06 1.98 6.20 86.65 0.54 2.51 16 27 H 0.04 0.87 8.11 -2.39 -0.02 0.85 16 28 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.26 7.78 -2.39 -0.02 1.24 16 31 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.07 2.05 7.33 -2.39 -0.02 2.03 16 34 H 0.41 15.57 7.56 -92.70 -0.70 14.87 16 35 H 0.05 1.88 7.52 -2.39 -0.02 1.86 16 36 H 0.08 2.50 8.14 -2.39 -0.02 2.49 16 37 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.12 3.04 8.14 -2.38 -0.02 3.02 16 39 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 40 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.06 3.17 6.47 -2.38 -0.02 3.15 16 43 H 0.25 13.32 8.31 -92.71 -0.77 12.54 16 44 H 0.05 1.94 6.07 -2.38 -0.01 1.92 16 45 H 0.06 2.05 7.58 -2.38 -0.02 2.03 16 Total: -1.00 -62.34 346.12 -1.90 -64.24 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: 0.28 Total: 28.50 kcal Atomic # 6 Polarization: 23.45 SS G_CDS: 6.04 Total: 29.49 kcal Atomic # 7 Polarization: -118.59 SS G_CDS: -8.46 Total: -127.05 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -1.65 Total: -40.83 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.90 Total: 45.65 kcal Total: -62.34 -1.90 -64.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051240588.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.159 kcal (2) G-P(sol) polarization free energy of solvation -62.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds