Wall clock time and date at job start Tue Mar 31 2020 03:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47842 * 110.99863 * 2 1 4 4 C 1.55115 * 104.90564 * 146.23854 * 3 2 1 5 5 C 1.55145 * 101.56151 * 323.16261 * 4 3 2 6 6 H 1.08995 * 110.70209 * 276.96813 * 5 4 3 7 7 C 1.50697 * 110.70791 * 153.90431 * 5 4 3 8 8 O 1.21281 * 119.99785 * 2.40347 * 7 5 4 9 9 N 1.34775 * 120.00045 * 182.40792 * 7 5 4 10 10 C 1.46498 * 120.00082 * 179.97438 * 9 7 5 11 11 C 1.53005 * 109.47110 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.67361 * 59.93372 * 11 10 9 13 13 C 1.53293 * 109.68146 * 180.49238 * 11 10 9 14 14 O 1.42955 * 109.22241 * 172.03083 * 13 11 10 15 15 C 1.42969 * 114.16292 * 297.41608 * 14 13 11 16 16 C 1.52877 * 109.29784 * 62.45228 * 15 14 13 17 17 N 1.47149 * 109.68081 * 299.42036 * 11 10 9 18 18 C 1.36939 * 120.98471 * 9.71758 * 17 11 10 19 19 H 1.07999 * 119.99629 * 328.83194 * 18 17 11 20 20 C 1.38810 * 119.99705 * 149.10711 * 18 17 11 21 21 N 1.31626 * 119.99502 * 163.81028 * 20 18 17 22 22 Si 1.86801 * 120.00328 * 343.81042 * 20 18 17 23 23 H 1.48501 * 109.46825 * 86.07689 * 22 20 18 24 24 H 1.48500 * 109.46771 * 206.07488 * 22 20 18 25 25 H 1.48496 * 109.47083 * 326.07879 * 22 20 18 26 26 C 1.47438 * 111.00158 * 120.84678 * 2 1 3 27 27 H 1.08994 * 109.47236 * 299.15268 * 1 2 3 28 28 H 1.09006 * 109.46879 * 59.15800 * 1 2 3 29 29 H 1.08997 * 109.46880 * 179.15456 * 1 2 3 30 30 H 1.09001 * 110.38174 * 265.19657 * 3 2 1 31 31 H 1.09000 * 110.37669 * 27.42682 * 3 2 1 32 32 H 1.09000 * 111.15203 * 205.04804 * 4 3 2 33 33 H 1.09001 * 110.92316 * 81.17061 * 4 3 2 34 34 H 0.97000 * 119.99430 * 359.97438 * 9 7 5 35 35 H 1.09005 * 109.46930 * 60.00096 * 10 9 7 36 36 H 1.08998 * 109.46910 * 299.99886 * 10 9 7 37 37 H 1.09003 * 109.50882 * 291.94877 * 13 11 10 38 38 H 1.08994 * 109.51172 * 52.09975 * 13 11 10 39 39 H 1.09003 * 109.51082 * 182.50393 * 15 14 13 40 40 H 1.08996 * 109.51157 * 302.60445 * 15 14 13 41 41 H 1.09001 * 109.61782 * 188.11381 * 16 15 14 42 42 H 1.08996 * 109.52496 * 67.69965 * 16 15 14 43 43 H 0.96999 * 119.99577 * 179.97438 * 21 20 18 44 44 H 1.08996 * 109.89444 * 117.33777 * 26 2 1 45 45 H 1.09005 * 110.02517 * 356.21765 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3052 1.3062 0.8330 5 6 2.9159 0.2821 1.9315 6 1 2.3752 0.7723 2.7411 7 6 4.1384 -0.4231 2.4600 8 8 5.2383 -0.1207 2.0481 9 7 4.0093 -1.3898 3.3902 10 6 5.1977 -2.0757 3.9035 11 6 4.7764 -3.1189 4.9405 12 1 4.1089 -3.8465 4.4788 13 6 6.0176 -3.8312 5.4899 14 8 5.6346 -4.6670 6.5846 15 6 5.0861 -3.9579 7.6983 16 6 3.8022 -3.2505 7.2642 17 7 4.0885 -2.4555 6.0595 18 6 3.7305 -1.1359 5.9842 19 1 4.3278 -0.4465 5.4060 20 6 2.6031 -0.6833 6.6557 21 7 2.4291 0.6061 6.8547 22 14 1.3329 -1.9041 7.2768 23 1 1.7333 -2.3947 8.6200 24 1 0.0089 -1.2376 7.3677 25 1 1.2467 -3.0502 6.3366 26 6 1.9974 -0.7058 1.1817 27 1 -0.3633 0.5006 0.8974 28 1 -0.3633 0.5269 -0.8824 29 1 -0.3633 -1.0275 -0.0152 30 1 2.2147 1.7040 -1.0182 31 1 1.2881 2.0596 0.4707 32 1 3.5482 2.2746 1.2704 33 1 4.1321 0.9343 0.2280 34 1 3.1296 -1.6313 3.7197 35 1 5.8637 -1.3493 4.3692 36 1 5.7160 -2.5690 3.0812 37 1 6.4644 -4.4414 4.7050 38 1 6.7404 -3.0909 5.8325 39 1 4.8628 -4.6593 8.5023 40 1 5.8060 -3.2187 8.0496 41 1 3.4576 -2.5945 8.0636 42 1 3.0353 -3.9922 7.0410 43 1 1.6411 0.9224 7.3236 44 1 2.5698 -1.5785 0.8674 45 1 1.1772 -1.0142 1.8300 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051240589.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:33 Heat of formation + Delta-G solvation = -40.270737 kcal Electronic energy + Delta-G solvation = -25841.462824 eV Core-core repulsion = 22281.085814 eV Total energy + Delta-G solvation = -3560.377010 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.87628 -38.89044 -37.75496 -35.47205 -33.68103 -32.16852 -31.69554 -31.03890 -29.04336 -27.57626 -26.04941 -25.22707 -23.48768 -22.54291 -21.57204 -20.92208 -19.97508 -19.33512 -17.23983 -16.64278 -16.10414 -16.00998 -15.81583 -15.24742 -15.01878 -14.68180 -14.39545 -14.26389 -14.01721 -13.74523 -13.50507 -13.30709 -13.03043 -12.63914 -12.49137 -12.04061 -11.92018 -11.75070 -11.63157 -11.58848 -11.18266 -11.15978 -11.02690 -10.79431 -10.63589 -10.57634 -10.40537 -9.85923 -9.69588 -9.49230 -9.17011 -8.73805 -8.36971 -8.28685 -7.07124 -6.10453 -3.54663 3.15953 3.21162 3.34103 3.35438 3.75239 4.02203 4.26495 4.35508 4.60958 4.64736 4.81069 5.11484 5.15118 5.31525 5.35016 5.39925 5.43568 5.50480 5.54208 5.58256 5.66501 5.75075 5.76841 5.80567 5.86198 5.88029 5.91008 6.00682 6.06641 6.10004 6.16647 6.22126 6.31641 6.41438 6.47320 6.69425 6.89248 7.01363 7.10663 7.56365 7.75819 8.17765 8.22570 8.72583 8.85294 9.51948 9.89595 11.03380 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.015786 B = 0.005307 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.293302 B = 5274.426569 C = 6174.211860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.533 5.533 3 C 0.039 3.961 4 C -0.106 4.106 5 C -0.131 4.131 6 H 0.106 0.894 7 C 0.526 3.474 8 O -0.561 6.561 9 N -0.693 5.693 10 C 0.136 3.864 11 C 0.128 3.872 12 H 0.046 0.954 13 C 0.054 3.946 14 O -0.388 6.388 15 C 0.046 3.954 16 C 0.089 3.911 17 N -0.606 5.606 18 C -0.266 4.266 19 H 0.097 0.903 20 C 0.029 3.971 21 N -0.903 5.903 22 Si 0.883 3.117 23 H -0.286 1.286 24 H -0.304 1.304 25 H -0.272 1.272 26 C 0.054 3.946 27 H 0.029 0.971 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.411 0.589 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.052 0.948 39 H 0.085 0.915 40 H 0.051 0.949 41 H 0.083 0.917 42 H 0.033 0.967 43 H 0.264 0.736 44 H 0.080 0.920 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.271 -3.920 -8.115 9.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.257 5.257 3 C -0.088 4.088 4 C -0.145 4.145 5 C -0.154 4.154 6 H 0.125 0.875 7 C 0.312 3.688 8 O -0.440 6.440 9 N -0.344 5.344 10 C 0.012 3.988 11 C 0.021 3.979 12 H 0.064 0.936 13 C -0.025 4.025 14 O -0.307 6.307 15 C -0.032 4.032 16 C -0.036 4.036 17 N -0.333 5.333 18 C -0.394 4.394 19 H 0.114 0.886 20 C -0.171 4.171 21 N -0.545 5.545 22 Si 0.714 3.286 23 H -0.214 1.214 24 H -0.232 1.232 25 H -0.197 1.197 26 C -0.074 4.074 27 H 0.048 0.952 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.248 0.752 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.070 0.930 41 H 0.101 0.899 42 H 0.051 0.949 43 H 0.074 0.926 44 H 0.098 0.902 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.444 -4.029 -8.793 9.682 hybrid contribution -1.706 0.032 1.649 2.373 sum -2.150 -3.997 -7.143 8.463 Atomic orbital electron populations 1.22557 0.87766 1.02069 1.00639 1.63594 1.07858 1.14639 1.39645 1.23142 0.95877 0.89232 1.00552 1.22598 0.97481 0.98752 0.95640 1.22541 0.95884 0.97487 0.99453 0.87545 1.20071 0.90039 0.79705 0.79032 1.90626 1.27608 1.65424 1.60350 1.45932 1.11144 1.37378 1.39934 1.21126 0.88201 0.94534 0.94947 1.21456 0.93851 0.93576 0.88977 0.93603 1.22912 0.96027 0.94211 0.89327 1.87830 1.82194 1.34203 1.26435 1.22986 0.96126 0.95909 0.88170 1.22002 0.95414 0.95078 0.91082 1.44425 1.69416 1.09067 1.10413 1.19020 1.06592 0.82326 1.31456 0.88571 1.25350 0.97418 0.95368 0.98963 1.69800 1.28990 1.12667 1.43004 0.87015 0.81401 0.81321 0.78908 1.21352 1.23188 1.19722 1.22771 0.97584 0.96916 0.90168 0.95210 0.91493 0.91390 0.90092 0.93430 0.90370 0.89418 0.75154 0.91240 0.92104 0.89341 0.92920 0.89735 0.93039 0.89940 0.94920 0.92614 0.90163 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.12 60.07 0.55 0.75 16 2 N -0.53 -6.92 5.45 -239.38 -1.30 -8.23 16 3 C 0.04 0.48 6.73 -2.19 -0.01 0.47 16 4 C -0.11 -1.52 6.17 -24.48 -0.15 -1.67 16 5 C -0.13 -2.08 3.33 -89.94 -0.30 -2.38 16 6 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 7 C 0.53 9.83 7.01 -10.99 -0.08 9.75 16 8 O -0.56 -11.96 15.73 5.56 0.09 -11.88 16 9 N -0.69 -12.77 3.74 -60.29 -0.23 -13.00 16 10 C 0.14 2.44 4.45 -4.04 -0.02 2.42 16 11 C 0.13 2.31 3.21 -67.42 -0.22 2.09 16 12 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 13 C 0.05 0.88 6.29 37.31 0.23 1.11 16 14 O -0.39 -6.85 10.74 -35.23 -0.38 -7.23 16 15 C 0.05 0.80 6.97 37.09 0.26 1.06 16 16 C 0.09 1.82 4.35 -3.75 -0.02 1.80 16 17 N -0.61 -12.98 2.78 -164.55 -0.46 -13.44 16 18 C -0.27 -6.55 7.51 -15.06 -0.11 -6.66 16 19 H 0.10 2.60 6.01 -52.49 -0.32 2.29 16 20 C 0.03 0.76 5.29 -17.43 -0.09 0.67 16 21 N -0.90 -25.46 13.97 55.49 0.78 -24.69 16 22 Si 0.88 20.61 24.28 -169.99 -4.13 16.48 16 23 H -0.29 -6.53 6.42 56.52 0.36 -6.16 16 24 H -0.30 -7.34 7.11 56.52 0.40 -6.93 16 25 H -0.27 -6.24 6.80 56.52 0.38 -5.85 16 26 C 0.05 0.75 6.46 -2.84 -0.02 0.73 16 27 H 0.03 0.33 8.10 -51.93 -0.42 -0.09 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.55 7.78 -51.93 -0.40 0.15 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.09 1.36 7.45 -51.93 -0.39 0.97 16 34 H 0.41 7.76 7.32 -40.82 -0.30 7.46 16 35 H 0.07 1.40 7.57 -51.93 -0.39 1.00 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.08 1.81 4.86 -51.93 -0.25 1.55 16 42 H 0.03 0.67 6.90 -51.93 -0.36 0.32 16 43 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.08 1.15 7.81 -51.93 -0.41 0.74 16 45 H 0.06 0.84 7.59 -51.93 -0.39 0.45 16 LS Contribution 343.15 15.07 5.17 5.17 Total: -1.00 -29.61 343.15 -7.90 -37.51 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -7.47 Total: 9.16 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 0.02 Total: 10.13 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -1.21 Total: -59.35 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.29 Total: -19.11 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.13 Total: 16.48 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.61 -7.90 -37.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051240589.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.760 kcal (2) G-P(sol) polarization free energy of solvation -29.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds