Wall clock time and date at job start Tue Mar 31 2020 03:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46850 * 110.99916 * 2 1 4 4 C 1.53027 * 109.52313 * 174.15860 * 3 2 1 5 5 C 1.53112 * 109.28127 * 59.17826 * 4 3 2 6 6 C 1.53122 * 109.16180 * 302.34358 * 5 4 3 7 7 C 1.46844 * 111.00231 * 235.78782 * 2 1 3 8 8 H 1.08995 * 109.45396 * 65.82801 * 7 2 1 9 9 C 1.50697 * 109.45868 * 305.85359 * 7 2 1 10 10 O 1.21280 * 120.00851 * 339.94865 * 9 7 2 11 11 N 1.34787 * 119.99720 * 159.94896 * 9 7 2 12 12 C 1.46494 * 120.00004 * 179.97438 * 11 9 7 13 13 H 1.09008 * 110.88436 * 37.42922 * 12 11 9 14 14 C 1.54908 * 111.00587 * 273.54798 * 12 11 9 15 15 N 1.47425 * 104.92961 * 204.82382 * 14 12 11 16 16 C 1.36938 * 125.65179 * 204.15650 * 15 14 12 17 17 H 1.08005 * 119.99558 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00146 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00086 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99779 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47595 * 59.99628 * 20 18 16 22 22 H 1.48504 * 109.46820 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46978 * 299.99208 * 20 18 16 24 24 C 1.47290 * 108.55742 * 24.15407 * 15 14 12 25 25 C 1.54325 * 107.30599 * 358.92448 * 24 15 14 26 26 H 1.08997 * 110.72163 * 96.18354 * 25 24 15 27 27 O 1.42898 * 110.87178 * 219.38109 * 25 24 15 28 28 H 1.09003 * 109.47198 * 184.20788 * 1 2 3 29 29 H 1.08999 * 109.47497 * 304.21806 * 1 2 3 30 30 H 1.09004 * 109.46797 * 64.21773 * 1 2 3 31 31 H 1.09004 * 109.46361 * 54.13468 * 3 2 1 32 32 H 1.09000 * 109.45081 * 294.16665 * 3 2 1 33 33 H 1.09001 * 109.50713 * 299.23468 * 4 3 2 34 34 H 1.09006 * 109.50459 * 179.11747 * 4 3 2 35 35 H 1.09002 * 109.52542 * 182.44089 * 5 4 3 36 36 H 1.09000 * 109.58063 * 62.28172 * 5 4 3 37 37 H 1.09007 * 109.50313 * 297.71787 * 6 5 4 38 38 H 1.08996 * 109.53955 * 177.61620 * 6 5 4 39 39 H 0.96999 * 119.99460 * 0.02562 * 11 9 7 40 40 H 1.09002 * 110.36632 * 323.71778 * 14 12 11 41 41 H 1.08995 * 110.36781 * 85.93015 * 14 12 11 42 42 H 0.96999 * 120.00175 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.85762 * 239.50064 * 24 15 14 44 44 H 1.08995 * 110.00297 * 118.43011 * 24 15 14 45 45 H 0.96700 * 114.00884 * 293.61196 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5180 1.3342 0.1468 5 6 4.1188 0.5370 -1.0142 6 6 3.5182 -0.8715 -1.0207 7 6 1.9953 -0.7708 -1.1337 8 1 1.7325 -0.2708 -2.0658 9 6 1.3983 -2.1544 -1.1204 10 8 0.9173 -2.5977 -0.0991 11 7 1.3988 -2.8994 -2.2437 12 6 0.8189 -4.2446 -2.2307 13 1 -0.0706 -4.2783 -1.6014 14 6 1.8623 -5.2946 -1.7740 15 7 1.4051 -6.5659 -2.3641 16 6 1.7016 -7.8169 -1.8927 17 1 2.3210 -7.9305 -1.0153 18 6 1.2069 -8.9390 -2.5432 19 7 0.4524 -8.8005 -3.6128 20 14 1.6107 -10.6455 -1.8996 21 1 1.1042 -10.7835 -0.5106 22 1 0.9663 -11.6661 -2.7648 23 1 3.0824 -10.8436 -1.9118 24 6 0.5771 -6.2639 -3.5442 25 6 0.5003 -4.7277 -3.6702 26 1 1.2471 -4.3607 -4.3743 27 8 -0.8095 -4.3140 -4.0642 28 1 -0.3634 -1.0249 0.0754 29 1 -0.3634 0.5779 0.8498 30 1 -0.3633 0.4470 -0.9254 31 1 1.5633 1.9258 0.8329 32 1 1.7325 1.8606 -0.9377 33 1 3.7813 0.8569 1.0907 34 1 3.9098 2.3513 0.1310 35 1 5.1998 0.4715 -0.8903 36 1 3.8897 1.0350 -1.9564 37 1 3.7814 -1.3836 -0.0950 38 1 3.9100 -1.4309 -1.8701 39 1 1.7838 -2.5450 -3.0604 40 1 2.8515 -5.0353 -2.1511 41 1 1.8783 -5.3654 -0.6864 42 1 0.1064 -9.5846 -4.0671 43 1 -0.4233 -6.6753 -3.4097 44 1 1.0344 -6.6868 -4.4387 45 1 -1.0577 -4.5909 -4.9568 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077237955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:18 Heat of formation + Delta-G solvation = -77.780129 kcal Electronic energy + Delta-G solvation = -25264.368099 eV Core-core repulsion = 21702.364560 eV Total energy + Delta-G solvation = -3562.003539 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.52543 -39.94003 -38.64946 -36.69064 -35.63442 -34.39621 -33.69131 -32.18126 -30.15622 -28.81616 -27.75592 -26.44016 -24.84656 -23.83600 -22.48156 -21.98639 -21.48088 -20.61530 -19.12100 -18.50406 -18.02675 -17.43126 -16.81051 -16.41744 -16.20529 -15.81700 -15.75593 -15.43029 -15.27413 -14.92114 -14.53541 -14.44034 -14.14611 -13.96209 -13.83563 -13.72866 -13.27879 -13.16948 -12.96291 -12.76971 -12.71055 -12.66890 -12.34762 -12.13827 -11.88921 -11.83895 -11.59952 -11.55454 -11.31430 -11.04740 -10.77938 -10.58938 -10.16201 -9.28053 -8.98525 -7.90186 -5.27364 1.44886 1.48683 1.54586 1.57785 1.94573 2.46771 2.93438 3.10563 3.30443 3.51904 3.58172 3.81011 3.89555 3.99831 4.03049 4.06271 4.17602 4.18671 4.31463 4.42897 4.45153 4.51880 4.55105 4.60290 4.78478 4.80946 4.84472 4.96232 4.99774 5.07484 5.08583 5.21115 5.27552 5.34690 5.41421 5.45442 5.48409 5.64173 5.93487 6.11760 6.13898 6.56560 6.85061 7.03028 7.26173 7.67402 8.30336 9.19572 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.025058 B = 0.003468 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.136594 B = 8071.999905 C = 8498.626330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.543 5.543 3 C 0.056 3.944 4 C -0.118 4.118 5 C -0.114 4.114 6 C -0.107 4.107 7 C 0.080 3.920 8 H 0.084 0.916 9 C 0.512 3.488 10 O -0.565 6.565 11 N -0.701 5.701 12 C 0.156 3.844 13 H 0.066 0.934 14 C 0.133 3.867 15 N -0.622 5.622 16 C -0.251 4.251 17 H 0.080 0.920 18 C -0.060 4.060 19 N -0.948 5.948 20 Si 0.981 3.019 21 H -0.281 1.281 22 H -0.290 1.290 23 H -0.274 1.274 24 C 0.161 3.839 25 C 0.093 3.907 26 H 0.097 0.903 27 O -0.569 6.569 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.032 0.968 31 H 0.083 0.917 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.087 0.913 39 H 0.416 0.584 40 H 0.042 0.958 41 H 0.029 0.971 42 H 0.250 0.750 43 H 0.020 0.980 44 H 0.028 0.972 45 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.744 23.238 -0.980 23.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.269 5.269 3 C -0.071 4.071 4 C -0.156 4.156 5 C -0.151 4.151 6 C -0.146 4.146 7 C -0.032 4.032 8 H 0.101 0.899 9 C 0.299 3.701 10 O -0.442 6.442 11 N -0.354 5.354 12 C 0.050 3.950 13 H 0.084 0.916 14 C 0.006 3.994 15 N -0.350 5.350 16 C -0.380 4.380 17 H 0.098 0.902 18 C -0.253 4.253 19 N -0.596 5.596 20 Si 0.809 3.191 21 H -0.207 1.207 22 H -0.216 1.216 23 H -0.199 1.199 24 C 0.035 3.965 25 C 0.033 3.967 26 H 0.114 0.886 27 O -0.377 6.377 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.050 0.950 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.253 0.747 40 H 0.060 0.940 41 H 0.047 0.953 42 H 0.059 0.941 43 H 0.038 0.962 44 H 0.046 0.954 45 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 5.501 22.763 0.712 23.429 hybrid contribution -0.406 -1.303 -1.168 1.796 sum 5.096 21.461 -0.456 22.062 Atomic orbital electron populations 1.22472 0.87009 1.02454 1.00953 1.61611 1.08166 1.14780 1.42336 1.22239 0.96379 0.87021 1.01492 1.21638 0.93609 1.01359 0.98992 1.21573 1.00707 0.93493 0.99328 1.21601 0.90293 0.99681 1.03001 1.21608 0.97191 0.89733 0.94671 0.89863 1.21146 0.78237 0.88004 0.82676 1.90684 1.46645 1.73658 1.33250 1.45721 1.61097 1.15008 1.13537 1.21670 0.95521 0.81702 0.96148 0.91585 1.21901 0.95728 0.85355 0.96418 1.44564 1.58935 1.00942 1.30556 1.19406 1.26636 0.82640 1.09286 0.90239 1.25646 0.99885 1.01599 0.98179 1.70112 1.38987 1.28910 1.21580 0.85123 0.77952 0.78820 0.77249 1.20727 1.21566 1.19925 1.21668 0.94574 0.90635 0.89622 1.23121 0.85369 0.93790 0.94433 0.88557 1.86430 1.32740 1.79410 1.39081 0.92665 0.90227 0.94984 0.89833 0.93613 0.92326 0.89081 0.90048 0.90345 0.92630 0.89449 0.74707 0.94013 0.95275 0.94083 0.96186 0.95394 0.75301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.10 127.69 1.16 1.62 16 2 N -0.54 -12.55 4.51 -901.61 -4.06 -16.62 16 3 C 0.06 0.87 5.46 86.32 0.47 1.34 16 4 C -0.12 -1.55 6.09 30.64 0.19 -1.37 16 5 C -0.11 -1.40 6.00 30.67 0.18 -1.22 16 6 C -0.11 -1.95 5.36 30.65 0.16 -1.79 16 7 C 0.08 1.74 2.24 44.19 0.10 1.84 16 8 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 9 C 0.51 15.66 6.26 87.65 0.55 16.21 16 10 O -0.56 -22.98 14.27 -3.03 -0.04 -23.03 16 11 N -0.70 -19.85 5.23 -435.96 -2.28 -22.14 16 12 C 0.16 5.92 3.04 46.38 0.14 6.06 16 13 H 0.07 3.00 7.73 -2.38 -0.02 2.98 16 14 C 0.13 5.83 6.92 86.85 0.60 6.43 16 15 N -0.62 -32.90 3.40 -691.30 -2.35 -35.26 16 16 C -0.25 -14.50 10.28 84.03 0.86 -13.64 16 17 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 18 C -0.06 -3.43 5.49 84.86 0.47 -2.96 16 19 N -0.95 -56.46 10.33 21.65 0.22 -56.23 16 20 Si 0.98 46.23 29.55 68.60 2.03 48.26 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 23 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 24 C 0.16 7.79 5.16 86.68 0.45 8.24 16 25 C 0.09 3.31 3.95 31.78 0.13 3.43 16 26 H 0.10 2.74 8.00 -2.39 -0.02 2.72 16 27 O -0.57 -18.66 13.40 -148.98 -2.00 -20.65 16 28 H 0.05 1.75 5.63 -2.39 -0.01 1.73 16 29 H 0.08 1.66 8.09 -2.39 -0.02 1.64 16 30 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.08 1.20 8.09 -2.38 -0.02 1.18 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.42 8.45 8.52 -92.71 -0.79 7.66 16 40 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 43 H 0.02 1.12 7.31 -2.38 -0.02 1.10 16 44 H 0.03 1.45 7.51 -2.39 -0.02 1.43 16 45 H 0.40 9.49 9.12 -74.06 -0.68 8.82 16 Total: -1.00 -75.86 353.06 -3.50 -79.37 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -0.48 Total: 22.11 kcal Atomic # 6 Polarization: 18.73 SS G_CDS: 5.46 Total: 24.19 kcal Atomic # 7 Polarization: -121.77 SS G_CDS: -8.47 Total: -130.24 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -2.04 Total: -43.68 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -75.86 -3.50 -79.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077237955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.586 kcal (2) G-P(sol) polarization free energy of solvation -75.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds