Wall clock time and date at job start Tue Mar 31 2020 03:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47837 * 111.00171 * 2 1 4 4 C 1.54910 * 104.79677 * 146.36117 * 3 2 1 5 5 C 1.55141 * 101.65144 * 322.93028 * 4 3 2 6 6 H 1.09001 * 110.85700 * 277.19679 * 5 4 3 7 7 C 1.53009 * 110.70198 * 154.03589 * 5 4 3 8 8 C 1.50699 * 109.46800 * 179.97438 * 7 5 4 9 9 O 1.21283 * 120.00055 * 0.02562 * 8 7 5 10 10 N 1.34776 * 119.99896 * 179.97438 * 8 7 5 11 11 C 1.46496 * 120.00084 * 179.97438 * 10 8 7 12 12 H 1.09008 * 110.91253 * 37.45558 * 11 10 8 13 13 C 1.54908 * 111.00674 * 273.55347 * 11 10 8 14 14 N 1.47425 * 104.92961 * 204.86080 * 13 11 10 15 15 C 1.36938 * 125.65179 * 204.15650 * 14 13 11 16 16 H 1.08005 * 119.99558 * 359.97438 * 15 14 13 17 17 C 1.38811 * 120.00146 * 180.02562 * 15 14 13 18 18 N 1.31620 * 120.00086 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99779 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47294 * 89.99594 * 19 17 15 21 21 H 1.48503 * 109.46797 * 209.99511 * 19 17 15 22 22 H 1.48500 * 109.47035 * 329.99310 * 19 17 15 23 23 C 1.47290 * 108.55742 * 24.15407 * 14 13 11 24 24 C 1.54325 * 107.30599 * 358.92448 * 23 14 13 25 25 H 1.08997 * 110.72163 * 96.18354 * 24 23 14 26 26 O 1.42898 * 110.87178 * 219.38109 * 24 23 14 27 27 C 1.47445 * 110.99798 * 120.84565 * 2 1 3 28 28 H 1.09001 * 109.47348 * 299.15754 * 1 2 3 29 29 H 1.09007 * 109.47077 * 59.15539 * 1 2 3 30 30 H 1.09002 * 109.47489 * 179.15763 * 1 2 3 31 31 H 1.08998 * 110.37771 * 265.19393 * 3 2 1 32 32 H 1.09008 * 110.37178 * 27.42492 * 3 2 1 33 33 H 1.09005 * 110.99106 * 204.84077 * 4 3 2 34 34 H 1.08995 * 110.98921 * 81.02406 * 4 3 2 35 35 H 1.08991 * 109.47092 * 59.94650 * 7 5 4 36 36 H 1.09002 * 109.46674 * 299.94668 * 7 5 4 37 37 H 0.97000 * 119.99844 * 0.02562 * 10 8 7 38 38 H 1.09002 * 110.36632 * 323.75475 * 13 11 10 39 39 H 1.08995 * 110.36781 * 85.96712 * 13 11 10 40 40 H 0.96999 * 120.00175 * 180.02562 * 18 17 15 41 41 H 1.09004 * 109.85762 * 239.50064 * 23 14 13 42 42 H 1.08995 * 110.00297 * 118.43011 * 23 14 13 43 43 H 0.96700 * 114.00884 * 293.61196 * 26 24 23 44 44 H 1.08999 * 109.88889 * 117.33788 * 27 2 1 45 45 H 1.09006 * 110.02199 * 356.21994 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3026 0.8297 5 6 2.9157 0.2821 1.9315 6 1 2.3751 0.7724 2.7412 7 6 4.1569 -0.4339 2.4681 8 6 3.7480 -1.4164 3.5352 9 8 2.5790 -1.5328 3.8364 10 7 4.6813 -2.1664 4.1539 11 6 4.2839 -3.1211 5.1916 12 1 3.3375 -3.5992 4.9387 13 6 4.2059 -2.4340 6.5778 14 7 4.4118 -3.5208 7.5525 15 6 3.9835 -3.5181 8.8532 16 1 3.4444 -2.6671 9.2424 17 6 4.2433 -4.6088 9.6716 18 7 4.9008 -5.6457 9.1974 19 14 3.6583 -4.6054 11.4457 20 1 2.2953 -5.1901 11.5187 21 1 4.5885 -5.4130 12.2751 22 1 3.6264 -3.2103 11.9537 23 6 5.1546 -4.6079 6.8924 24 6 5.3946 -4.1779 5.4298 25 1 6.3824 -3.7315 5.3162 26 8 5.2374 -5.2858 4.5411 27 6 1.9973 -0.7058 1.1818 28 1 -0.3634 0.5007 0.8974 29 1 -0.3633 0.5269 -0.8824 30 1 -0.3634 -1.0275 -0.0151 31 1 2.2147 1.7038 -1.0182 32 1 1.2880 2.0595 0.4707 33 1 3.5495 2.2719 1.2641 34 1 4.1301 0.9281 0.2244 35 1 4.8440 0.2983 2.8919 36 1 4.6496 -0.9660 1.6543 37 1 5.6162 -2.0736 3.9127 38 1 4.9911 -1.6841 6.6742 39 1 3.2266 -1.9773 6.7202 40 1 5.0819 -6.4080 9.7693 41 1 4.5674 -5.5259 6.9173 42 1 6.1095 -4.7652 7.3940 43 1 5.9070 -5.9751 4.6492 44 1 2.5696 -1.5785 0.8674 45 1 1.1770 -1.0142 1.8300 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078005898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:10 Heat of formation + Delta-G solvation = -54.155955 kcal Electronic energy + Delta-G solvation = -24631.666867 eV Core-core repulsion = 21070.687749 eV Total energy + Delta-G solvation = -3560.979118 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.06422 -38.87251 -37.70412 -35.07804 -34.01064 -33.43904 -31.71507 -30.15409 -28.53769 -27.55057 -26.71539 -25.15853 -24.19790 -21.24213 -21.18176 -20.56181 -20.20702 -19.78644 -17.29432 -16.99878 -16.64479 -16.23533 -15.80924 -15.45676 -15.00291 -14.63094 -14.20444 -14.06031 -13.93975 -13.54184 -13.25881 -13.07119 -12.81019 -12.69035 -12.46893 -12.10657 -11.94871 -11.75789 -11.51273 -11.46666 -11.37021 -11.24527 -10.91681 -10.89027 -10.82485 -10.81215 -10.17126 -9.90825 -9.84579 -9.71166 -9.29511 -8.82116 -8.63825 -8.48120 -6.92231 -5.77278 -3.11618 2.84061 3.31799 3.39049 3.43966 3.45615 3.87265 4.36112 4.42867 4.48820 4.61433 4.67238 4.90356 5.06418 5.16447 5.18427 5.26595 5.28749 5.33885 5.42968 5.47987 5.53246 5.56355 5.57242 5.65850 5.69944 5.71423 5.81998 5.86711 5.99513 6.08575 6.13888 6.17568 6.53863 6.62620 6.78962 6.89592 6.90035 7.30739 7.45233 7.69035 7.75110 8.09896 8.16127 8.44890 9.13874 9.74221 10.37652 11.34781 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.025387 B = 0.003007 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.643658 B = 9308.716445 C = 9749.878802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.538 5.538 3 C 0.041 3.959 4 C -0.126 4.126 5 C -0.092 4.092 6 H 0.084 0.916 7 C -0.130 4.130 8 C 0.510 3.490 9 O -0.537 6.537 10 N -0.717 5.717 11 C 0.140 3.860 12 H 0.101 0.899 13 C 0.131 3.869 14 N -0.600 5.600 15 C -0.228 4.228 16 H 0.081 0.919 17 C -0.008 4.008 18 N -0.924 5.924 19 Si 0.915 3.085 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.153 3.847 24 C 0.069 3.931 25 H 0.057 0.943 26 O -0.563 6.563 27 C 0.050 3.950 28 H 0.027 0.973 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.396 0.604 38 H 0.022 0.978 39 H 0.050 0.950 40 H 0.253 0.747 41 H 0.061 0.939 42 H 0.049 0.951 43 H 0.376 0.624 44 H 0.074 0.926 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.003 11.413 -17.969 21.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.262 5.262 3 C -0.087 4.087 4 C -0.164 4.164 5 C -0.111 4.111 6 H 0.102 0.898 7 C -0.170 4.170 8 C 0.296 3.704 9 O -0.414 6.414 10 N -0.368 5.368 11 C 0.034 3.966 12 H 0.119 0.881 13 C 0.003 3.997 14 N -0.328 5.328 15 C -0.356 4.356 16 H 0.098 0.902 17 C -0.204 4.204 18 N -0.572 5.572 19 Si 0.746 3.254 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.028 3.972 24 C 0.009 3.991 25 H 0.075 0.925 26 O -0.368 6.368 27 C -0.077 4.077 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.230 0.770 38 H 0.040 0.960 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.223 0.777 44 H 0.092 0.908 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.214 11.265 -18.214 21.417 hybrid contribution 0.458 -0.001 1.843 1.899 sum 0.244 11.264 -16.371 19.873 Atomic orbital electron populations 1.22529 0.87805 1.02191 1.00344 1.63595 1.07971 1.14094 1.40588 1.23037 0.95594 0.89803 1.00268 1.22795 0.97816 0.99167 0.96645 1.22123 0.95435 0.95989 0.97590 0.89807 1.21684 0.99258 0.98108 0.97975 1.20616 0.86025 0.81380 0.82355 1.90707 1.18078 1.67558 1.65056 1.45965 1.10168 1.40959 1.39672 1.22215 0.98697 0.88124 0.87529 0.88107 1.21834 0.99069 0.91722 0.87051 1.44305 1.65416 1.14969 1.08120 1.19090 1.29964 1.01956 0.84606 0.90155 1.24816 1.00541 0.96362 0.98683 1.69918 1.45037 1.07102 1.35125 0.86064 0.78010 0.77387 0.83983 1.21472 1.21628 1.20623 1.21851 0.97402 0.92459 0.85531 1.23440 0.96325 0.86796 0.92575 0.92509 1.86467 1.57027 1.32831 1.60496 1.22876 0.98688 0.96652 0.89481 0.95397 0.91669 0.91318 0.90373 0.93638 0.90712 0.90408 0.88760 0.88694 0.76981 0.96011 0.93214 0.93647 0.92129 0.93315 0.77671 0.90776 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.12 60.06 0.55 0.74 16 2 N -0.54 -5.84 5.44 -239.51 -1.30 -7.14 16 3 C 0.04 0.36 6.73 -2.30 -0.02 0.34 16 4 C -0.13 -1.01 6.52 -24.59 -0.16 -1.17 16 5 C -0.09 -0.95 2.55 -88.79 -0.23 -1.18 16 6 H 0.08 1.00 8.04 -51.93 -0.42 0.58 16 7 C -0.13 -1.27 5.09 -27.88 -0.14 -1.41 16 8 C 0.51 7.35 7.62 -10.99 -0.08 7.27 16 9 O -0.54 -9.95 14.59 5.55 0.08 -9.87 16 10 N -0.72 -10.30 5.23 -51.73 -0.27 -10.57 16 11 C 0.14 2.62 3.04 -65.79 -0.20 2.42 16 12 H 0.10 2.20 7.73 -51.92 -0.40 1.80 16 13 C 0.13 2.82 6.92 -2.53 -0.02 2.80 16 14 N -0.60 -15.47 3.40 -169.86 -0.58 -16.05 16 15 C -0.23 -6.42 10.28 -15.06 -0.15 -6.58 16 16 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 17 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 18 N -0.92 -26.86 10.33 55.49 0.57 -26.29 16 19 Si 0.92 22.17 29.55 -169.99 -5.02 17.14 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.15 3.63 5.16 -2.92 -0.02 3.62 16 24 C 0.07 1.26 3.95 -24.90 -0.10 1.16 16 25 H 0.06 0.90 8.00 -51.93 -0.42 0.49 16 26 O -0.56 -9.65 13.40 -35.23 -0.47 -10.13 16 27 C 0.05 0.61 5.49 -2.83 -0.02 0.59 16 28 H 0.03 0.27 8.10 -51.93 -0.42 -0.15 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.39 7.78 -51.92 -0.40 -0.02 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.57 8.05 -51.93 -0.42 0.16 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.78 8.06 -51.93 -0.42 0.36 16 37 H 0.40 4.42 8.51 -40.82 -0.35 4.07 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.06 1.63 7.31 -51.93 -0.38 1.25 16 42 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 43 H 0.38 4.87 9.12 45.56 0.42 5.28 16 44 H 0.07 0.93 7.77 -51.93 -0.40 0.53 16 45 H 0.07 0.95 7.11 -51.93 -0.37 0.58 16 LS Contribution 357.46 15.07 5.39 5.39 Total: -1.00 -33.48 357.46 -9.16 -42.64 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -6.88 Total: 6.59 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -0.68 Total: 8.28 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -1.58 Total: -60.04 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.39 Total: -19.99 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.48 -9.16 -42.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078005898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.516 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds