Wall clock time and date at job start Tue Mar 31 2020 03:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42896 * 114.00301 * 2 1 4 4 H 1.08997 * 110.92055 * 26.09941 * 3 2 1 5 5 C 1.54909 * 111.00270 * 262.19829 * 3 2 1 6 6 N 1.47426 * 104.83381 * 204.91666 * 5 3 2 7 7 C 1.36937 * 125.65098 * 204.09440 * 6 5 3 8 8 H 1.08000 * 120.00262 * 180.02562 * 7 6 5 9 9 C 1.38813 * 119.99548 * 0.03593 * 7 6 5 10 10 N 1.31615 * 120.00732 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99599 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46881 * 90.00394 * 11 9 7 13 13 H 1.48499 * 109.47149 * 210.00031 * 11 9 7 14 14 H 1.48496 * 109.47418 * 330.00294 * 11 9 7 15 15 C 1.47018 * 108.70104 * 24.12870 * 6 5 3 16 16 C 1.54322 * 107.27336 * 358.94171 * 15 6 5 17 17 H 1.09002 * 110.71963 * 96.17078 * 16 15 6 18 18 N 1.46502 * 110.72235 * 219.26811 * 16 15 6 19 19 C 1.34774 * 119.99871 * 271.16020 * 18 16 15 20 20 O 1.21279 * 120.00430 * 359.97438 * 19 18 16 21 21 C 1.50702 * 119.99953 * 180.02562 * 19 18 16 22 22 H 1.09002 * 110.36915 * 42.34152 * 21 19 18 23 23 C 1.54382 * 110.40641 * 279.99403 * 21 19 18 24 24 C 1.54260 * 105.05955 * 217.36768 * 23 21 19 25 25 C 1.54379 * 105.06020 * 0.02562 * 24 23 21 26 26 N 1.48551 * 104.59633 * 23.85182 * 25 24 23 27 27 C 1.46903 * 111.00128 * 200.95996 * 26 25 24 28 28 H 1.09005 * 109.46795 * 300.00243 * 1 2 3 29 29 H 1.08999 * 109.47705 * 59.99863 * 1 2 3 30 30 H 1.09003 * 109.47601 * 180.02562 * 1 2 3 31 31 H 1.08998 * 110.36917 * 86.07377 * 5 3 2 32 32 H 1.09009 * 110.46209 * 323.80013 * 5 3 2 33 33 H 0.96996 * 120.00556 * 179.97438 * 10 9 7 34 34 H 1.08998 * 109.88222 * 239.52595 * 15 6 5 35 35 H 1.09004 * 109.88300 * 118.35961 * 15 6 5 36 36 H 0.96999 * 120.00288 * 91.15371 * 18 16 15 37 37 H 1.08999 * 110.32843 * 336.26318 * 23 21 19 38 38 H 1.09007 * 110.32193 * 98.37277 * 23 21 19 39 39 H 1.09003 * 110.32678 * 118.90060 * 24 23 21 40 40 H 1.09004 * 110.32641 * 241.10895 * 24 23 21 41 41 H 1.09005 * 110.40986 * 142.63155 * 25 24 23 42 42 H 1.09006 * 110.41076 * 264.95516 * 25 24 23 43 43 H 1.09005 * 109.46651 * 175.41950 * 27 26 25 44 44 H 1.08992 * 109.46879 * 295.41452 * 27 26 25 45 45 H 1.08996 * 109.47033 * 55.42175 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3333 2.0329 0.4479 5 6 2.4154 1.7327 -1.4328 6 7 3.4909 2.7227 -1.2414 7 6 3.8431 3.7010 -2.1326 8 1 4.6494 4.3802 -1.8983 9 6 3.1635 3.8197 -3.3372 10 7 2.1804 2.9925 -3.6226 11 14 3.6434 5.1546 -4.5526 12 1 4.6830 4.6329 -5.4758 13 1 2.4491 5.5656 -5.3336 14 1 4.1796 6.3264 -3.8148 15 6 4.1233 2.4853 0.0644 16 6 3.3825 1.3032 0.7241 17 1 3.9119 0.3675 0.5443 18 7 3.2146 1.5336 2.1611 19 6 4.1699 1.1340 3.0238 20 8 5.1682 0.5831 2.6106 21 6 3.9970 1.3705 4.5020 22 1 2.9742 1.1462 4.8051 23 6 4.3570 2.8286 4.8596 24 6 5.0614 2.7431 6.2293 25 6 5.0683 1.2406 6.5838 26 7 4.9624 0.5466 5.2746 27 6 4.4654 -0.8253 5.4446 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.5685 2.1872 -1.9469 32 1 2.7847 0.8756 -1.9960 33 1 1.7053 3.0757 -4.4641 34 1 4.0316 3.3746 0.6879 35 1 5.1749 2.2333 -0.0733 36 1 2.4160 1.9739 2.4917 37 1 5.0317 3.2462 4.1123 38 1 3.4537 3.4343 4.9338 39 1 6.0819 3.1188 6.1543 40 1 4.5038 3.3064 6.9776 41 1 5.9998 0.9719 7.0822 42 1 4.2151 0.9953 7.2162 43 1 4.3202 -1.2830 4.4660 44 1 5.1909 -1.4066 6.0136 45 1 3.5163 -0.8041 5.9803 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081435447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:06 Heat of formation + Delta-G solvation = -35.117997 kcal Electronic energy + Delta-G solvation = -25224.281192 eV Core-core repulsion = 21664.127621 eV Total energy + Delta-G solvation = -3560.153570 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.19370 -38.67542 -37.49720 -35.86956 -33.98620 -32.40795 -31.78325 -29.80571 -28.61888 -26.98617 -26.08525 -25.82702 -24.31271 -22.44584 -21.17821 -20.66213 -20.21183 -19.64647 -17.56773 -16.93744 -16.46915 -16.10256 -15.50503 -15.25630 -14.69293 -14.46019 -14.31392 -14.27323 -14.14854 -13.95805 -13.37428 -13.10545 -12.94786 -12.57365 -12.23079 -12.13866 -11.90185 -11.74566 -11.61040 -11.42603 -11.27421 -11.24619 -11.02402 -10.85435 -10.82931 -10.73970 -10.18881 -9.90103 -9.81478 -9.57293 -9.04688 -8.70188 -8.67598 -8.57685 -6.89229 -5.69096 -3.12019 2.85585 3.16863 3.39452 3.44477 3.46068 3.95501 4.12680 4.40019 4.43450 4.50994 4.72222 4.92165 4.97355 5.19400 5.21140 5.24356 5.31265 5.41152 5.43262 5.49116 5.56364 5.61107 5.64933 5.69124 5.70672 5.78454 5.84405 5.86618 5.93458 5.94352 6.09799 6.23743 6.52285 6.54219 6.71497 6.76792 6.94162 7.26491 7.56388 7.72258 7.75747 7.82005 8.27288 8.52271 9.16599 9.77041 10.39751 11.34709 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019176 B = 0.003881 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.843223 B = 7213.285462 C = 8202.002309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.381 6.381 3 C 0.055 3.945 4 H 0.066 0.934 5 C 0.142 3.858 6 N -0.601 5.601 7 C -0.222 4.222 8 H 0.080 0.920 9 C -0.010 4.010 10 N -0.923 5.923 11 Si 0.917 3.083 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.131 3.869 16 C 0.137 3.863 17 H 0.101 0.899 18 N -0.718 5.718 19 C 0.520 3.480 20 O -0.516 6.516 21 C 0.043 3.957 22 H 0.071 0.929 23 C -0.114 4.114 24 C -0.122 4.122 25 C 0.032 3.968 26 N -0.489 5.489 27 C 0.015 3.985 28 H 0.032 0.968 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.026 0.974 33 H 0.253 0.747 34 H 0.029 0.971 35 H 0.033 0.967 36 H 0.395 0.605 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.737 -3.089 19.748 20.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.299 6.299 3 C -0.004 4.004 4 H 0.084 0.916 5 C 0.016 3.984 6 N -0.329 5.329 7 C -0.350 4.350 8 H 0.098 0.902 9 C -0.206 4.206 10 N -0.572 5.572 11 Si 0.747 3.253 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.206 1.206 15 C 0.004 3.996 16 C 0.032 3.968 17 H 0.119 0.881 18 N -0.370 5.370 19 C 0.305 3.695 20 O -0.390 6.390 21 C -0.069 4.069 22 H 0.089 0.911 23 C -0.152 4.152 24 C -0.160 4.160 25 C -0.096 4.096 26 N -0.213 5.213 27 C -0.134 4.134 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.130 0.870 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.228 0.772 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -1.419 -3.659 18.969 19.370 hybrid contribution -1.196 1.002 -0.087 1.563 sum -2.615 -2.657 18.881 19.246 Atomic orbital electron populations 1.22702 0.81698 1.01901 0.99867 1.87853 1.19124 1.27810 1.95076 1.24034 0.92649 0.83663 1.00083 0.91560 1.22286 0.94635 0.92039 0.89436 1.44310 1.37311 1.35444 1.15793 1.19103 1.13826 1.06101 0.95991 0.90198 1.24797 0.98526 0.99376 0.97861 1.69749 1.24571 1.38767 1.24094 0.86036 0.77315 0.80925 0.81004 1.21520 1.21648 1.20646 1.21606 0.95874 0.94069 0.88079 1.22134 0.96635 1.00110 0.77905 0.88136 1.46008 1.22327 1.61537 1.07115 1.20177 0.83290 0.78667 0.87404 1.90711 1.28403 1.40914 1.78931 1.22661 0.96047 0.95527 0.92653 0.91102 1.22247 1.01373 0.93545 0.98035 1.22286 1.01704 0.95696 0.96347 1.23164 1.01502 0.93962 0.90987 1.65089 1.42589 1.01510 1.12134 1.22534 0.98170 0.90230 1.02419 0.94897 0.93525 0.90341 0.87032 0.95564 0.93622 0.95273 0.94885 0.77196 0.90125 0.90393 0.90557 0.91007 0.89707 0.93747 0.90850 0.90903 0.95508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.85 101.05 1.10 1.59 16 2 O -0.38 -6.99 10.51 -35.23 -0.37 -7.36 16 3 C 0.06 1.06 3.17 -24.58 -0.08 0.98 16 4 H 0.07 1.17 7.70 -51.93 -0.40 0.77 16 5 C 0.14 3.47 5.62 -2.53 -0.01 3.45 16 6 N -0.60 -15.54 3.39 -170.07 -0.58 -16.12 16 7 C -0.22 -6.20 10.27 -15.06 -0.15 -6.35 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 10 N -0.92 -26.59 10.09 55.49 0.56 -26.04 16 11 Si 0.92 21.96 29.55 -169.99 -5.02 16.94 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.13 2.88 6.99 -3.07 -0.02 2.86 16 16 C 0.14 2.62 3.01 -66.10 -0.20 2.42 16 17 H 0.10 2.15 7.62 -51.93 -0.40 1.76 16 18 N -0.72 -10.92 5.12 -52.03 -0.27 -11.19 16 19 C 0.52 8.22 6.72 -10.99 -0.07 8.15 16 20 O -0.52 -10.44 16.24 5.56 0.09 -10.35 16 21 C 0.04 0.51 2.68 -67.21 -0.18 0.33 16 22 H 0.07 0.70 7.98 -51.93 -0.41 0.29 16 23 C -0.11 -1.14 6.54 -25.35 -0.17 -1.30 16 24 C -0.12 -1.02 7.00 -25.35 -0.18 -1.20 16 25 C 0.03 0.28 6.49 -2.19 -0.01 0.27 16 26 N -0.49 -5.98 4.92 -231.70 -1.14 -7.11 16 27 C 0.02 0.16 9.44 60.07 0.57 0.73 16 28 H 0.03 0.40 8.12 -51.93 -0.42 -0.03 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.11 2.99 5.87 -51.93 -0.30 2.69 16 32 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.39 4.82 8.55 -40.82 -0.35 4.47 16 37 H 0.08 0.96 7.85 -51.93 -0.41 0.55 16 38 H 0.08 0.62 8.14 -51.92 -0.42 0.19 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.04 0.34 7.91 -51.93 -0.41 -0.07 16 43 H 0.07 0.93 7.96 -51.93 -0.41 0.51 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.03 0.24 7.98 -51.93 -0.41 -0.17 16 LS Contribution 360.40 15.07 5.43 5.43 Total: -1.00 -33.09 360.40 -8.51 -41.59 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.70 Total: 2.64 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: 0.49 Total: 11.56 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: -1.42 Total: -60.45 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.28 Total: -17.70 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.09 -8.51 -41.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081435447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.473 kcal (2) G-P(sol) polarization free energy of solvation -33.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds