Wall clock time and date at job start Tue Mar 31 2020 03:58:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.42895 * 113.99942 * 2 1
4 4 H 1.08994 * 110.91914 * 26.09675 * 3 2 1
5 5 C 1.55127 * 111.16331 * 262.16368 * 3 2 1
6 6 N 1.47423 * 104.94761 * 205.13274 * 5 3 2
7 7 C 1.36936 * 125.64771 * 204.04157 * 6 5 3
8 8 H 1.07999 * 119.99832 * 179.97438 * 7 6 5
9 9 C 1.38808 * 120.00209 * 359.95958 * 7 6 5
10 10 N 1.31621 * 119.99858 * 359.97438 * 9 7 6
11 11 Si 1.86801 * 119.99945 * 180.02562 * 9 7 6
12 12 H 1.48496 * 109.47100 * 59.99809 * 11 9 7
13 13 H 1.48498 * 109.46864 * 179.97438 * 11 9 7
14 14 H 1.48502 * 109.47065 * 299.99675 * 11 9 7
15 15 C 1.47027 * 108.70006 * 24.00392 * 6 5 3
16 16 C 1.54322 * 107.27305 * 358.94289 * 15 6 5
17 17 H 1.08996 * 110.72294 * 96.34299 * 16 15 6
18 18 N 1.46499 * 110.71872 * 219.44202 * 16 15 6
19 19 C 1.34771 * 119.99934 * 271.15322 * 18 16 15
20 20 O 1.21277 * 120.00207 * 0.02562 * 19 18 16
21 21 C 1.50700 * 120.00017 * 179.97438 * 19 18 16
22 22 H 1.09000 * 110.42149 * 320.86466 * 21 19 18
23 23 C 1.54910 * 110.36935 * 83.17556 * 21 19 18
24 24 C 1.55151 * 101.64951 * 155.90061 * 23 21 19
25 25 C 1.54311 * 103.01892 * 324.34544 * 24 23 21
26 26 N 1.47449 * 107.23418 * 22.28649 * 25 24 23
27 27 C 1.46901 * 110.99907 * 123.25722 * 26 25 24
28 28 H 1.09002 * 109.46917 * 60.00445 * 1 2 3
29 29 H 1.08998 * 109.47396 * 180.02562 * 1 2 3
30 30 H 1.08997 * 109.47070 * 300.00355 * 1 2 3
31 31 H 1.09003 * 110.41324 * 86.20352 * 5 3 2
32 32 H 1.09000 * 110.20498 * 323.96063 * 5 3 2
33 33 H 0.96998 * 119.99918 * 179.97438 * 10 9 7
34 34 H 1.09001 * 109.87975 * 239.52146 * 15 6 5
35 35 H 1.09003 * 110.00389 * 118.43125 * 15 6 5
36 36 H 0.96998 * 119.99789 * 91.15832 * 18 16 15
37 37 H 1.08997 * 110.98941 * 37.81468 * 23 21 19
38 38 H 1.08999 * 111.02481 * 274.00178 * 23 21 19
39 39 H 1.09000 * 110.70111 * 205.96297 * 24 23 21
40 40 H 1.08994 * 110.85229 * 82.80062 * 24 23 21
41 41 H 1.09005 * 109.89258 * 262.87907 * 25 24 23
42 42 H 1.08998 * 109.88733 * 141.68924 * 25 24 23
43 43 H 1.09002 * 109.47401 * 59.87266 * 27 26 25
44 44 H 1.09001 * 109.46874 * 299.87279 * 27 26 25
45 45 H 1.09004 * 109.46970 * 179.87412 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 1 1.3332 2.0328 0.4479
5 6 2.4182 1.7368 -1.4331
6 7 3.4968 2.7232 -1.2408
7 6 3.8517 3.7014 -2.1308
8 1 4.6597 4.3784 -1.8954
9 6 3.1734 3.8228 -3.3358
10 7 2.1893 2.9973 -3.6230
11 14 3.6581 5.1568 -4.5502
12 1 5.0748 4.9681 -4.9535
13 1 2.7871 5.0740 -5.7501
14 1 3.4981 6.4885 -3.9127
15 6 4.1276 2.4832 0.0654
16 6 3.3824 1.3033 0.7243
17 1 3.9105 0.3664 0.5471
18 7 3.2108 1.5357 2.1605
19 6 4.1626 1.1351 3.0264
20 8 5.1614 0.5825 2.6167
21 6 3.9864 1.3747 4.5038
22 1 3.5353 2.3513 4.6795
23 6 3.1156 0.2576 5.1311
24 6 3.5664 0.3050 6.6149
25 6 5.0699 0.6364 6.5110
26 7 5.2868 1.2756 5.2001
27 6 5.9029 2.6001 5.3557
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3634 -1.0276 0.0005
30 1 -0.3633 0.5139 0.8899
31 1 1.5730 2.1943 -1.9475
32 1 2.7853 0.8778 -1.9947
33 1 1.7150 3.0824 -4.4648
34 1 4.0385 3.3727 0.6891
35 1 5.1789 2.2289 -0.0693
36 1 2.4121 1.9779 2.4882
37 1 3.3420 -0.7108 4.6850
38 1 2.0547 0.4899 5.0378
39 1 3.4173 -0.6626 7.0940
40 1 3.0358 1.0877 7.1568
41 1 5.6572 -0.2794 6.5786
42 1 5.3546 1.3218 7.3093
43 1 6.8640 2.4969 5.8595
44 1 5.2481 3.2379 5.9495
45 1 6.0538 3.0483 4.3736
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001081435448.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:58:08
Heat of formation + Delta-G solvation = -34.987322 kcal
Electronic energy + Delta-G solvation = -25200.051553 eV
Core-core repulsion = 21639.903649 eV
Total energy + Delta-G solvation = -3560.147904 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-40.16704 -38.69162 -37.51125 -35.85434 -33.94858 -32.32245 -31.76648 -29.84692
-28.62295 -26.97175 -26.07304 -25.84045 -24.32043 -22.45373 -21.33293 -20.63863
-20.09899 -19.63585 -17.54232 -16.95306 -16.42207 -16.16079 -15.42443 -15.25215
-14.85555 -14.54264 -14.33437 -14.16855 -14.00991 -13.58860 -13.49924 -13.21552
-12.84727 -12.77244 -12.32636 -12.14060 -11.87617 -11.70738 -11.55350 -11.41878
-11.32609 -11.26037 -11.02158 -10.99424 -10.80457 -10.73812 -10.21345 -9.89219
-9.80512 -9.55059 -9.03400 -8.69192 -8.59454 -8.43243 -6.88725 -5.68609
-3.11561 2.87325 3.19236 3.39986 3.44216 3.45556 3.96616 4.13972
4.33249 4.44364 4.50665 4.66814 4.92606 4.98450 5.16507 5.18638
5.24374 5.31942 5.43578 5.45878 5.50123 5.54734 5.56589 5.62289
5.70243 5.71813 5.73364 5.81112 5.85865 5.94525 5.95209 6.11325
6.24915 6.54311 6.66022 6.72848 6.84161 6.96404 7.27666 7.56476
7.73254 7.77977 7.84178 8.27937 8.56937 9.17084 9.77424 10.40337
11.35119
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.019916 B = 0.003857 C = 0.003345
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1405.591502 B = 7257.403797 C = 8368.024954
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.035 3.965
2 O -0.380 6.380
3 C 0.054 3.946
4 H 0.066 0.934
5 C 0.142 3.858
6 N -0.600 5.600
7 C -0.223 4.223
8 H 0.079 0.921
9 C -0.010 4.010
10 N -0.923 5.923
11 Si 0.917 3.083
12 H -0.284 1.284
13 H -0.290 1.290
14 H -0.285 1.285
15 C 0.131 3.869
16 C 0.138 3.862
17 H 0.101 0.899
18 N -0.719 5.719
19 C 0.520 3.480
20 O -0.515 6.515
21 C 0.054 3.946
22 H 0.074 0.926
23 C -0.116 4.116
24 C -0.141 4.141
25 C 0.044 3.956
26 N -0.512 5.512
27 C 0.022 3.978
28 H 0.046 0.954
29 H 0.078 0.922
30 H 0.033 0.967
31 H 0.112 0.888
32 H 0.026 0.974
33 H 0.254 0.746
34 H 0.028 0.972
35 H 0.033 0.967
36 H 0.394 0.606
37 H 0.083 0.917
38 H 0.081 0.919
39 H 0.079 0.921
40 H 0.069 0.931
41 H 0.080 0.920
42 H 0.057 0.943
43 H 0.071 0.929
44 H 0.026 0.974
45 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.007 -3.456 19.967 20.486
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 O -0.298 6.298
3 C -0.005 4.005
4 H 0.084 0.916
5 C 0.017 3.983
6 N -0.328 5.328
7 C -0.351 4.351
8 H 0.097 0.903
9 C -0.205 4.205
10 N -0.572 5.572
11 Si 0.748 3.252
12 H -0.211 1.211
13 H -0.215 1.215
14 H -0.211 1.211
15 C 0.004 3.996
16 C 0.033 3.967
17 H 0.119 0.881
18 N -0.371 5.371
19 C 0.304 3.696
20 O -0.388 6.388
21 C -0.058 4.058
22 H 0.092 0.908
23 C -0.154 4.154
24 C -0.179 4.179
25 C -0.084 4.084
26 N -0.236 5.236
27 C -0.126 4.126
28 H 0.064 0.936
29 H 0.097 0.903
30 H 0.051 0.949
31 H 0.130 0.870
32 H 0.044 0.956
33 H 0.064 0.936
34 H 0.046 0.954
35 H 0.051 0.949
36 H 0.227 0.773
37 H 0.102 0.898
38 H 0.100 0.900
39 H 0.097 0.903
40 H 0.087 0.913
41 H 0.099 0.901
42 H 0.075 0.925
43 H 0.090 0.910
44 H 0.045 0.955
45 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -1.840 -4.258 19.160 19.714
hybrid contribution -0.848 1.675 -0.012 1.878
sum -2.689 -2.583 19.148 19.508
Atomic orbital electron populations
1.22701 0.81712 1.01901 0.99851 1.87855 1.19106 1.27757 1.95061
1.24067 0.92667 0.83665 1.00108 0.91601 1.22320 0.94519 0.92059
0.89445 1.44295 1.37118 1.35599 1.15806 1.19054 1.13789 1.06222
0.96046 0.90272 1.24798 0.98536 0.99369 0.97837 1.69746 1.24540
1.38737 1.24156 0.86109 0.77708 0.81000 0.80426 1.21100 1.21534
1.21144 1.21598 0.95873 0.94071 0.88058 1.22124 0.96572 1.00078
0.77959 0.88122 1.46016 1.22559 1.61501 1.07038 1.20244 0.83227
0.78820 0.87337 1.90700 1.28353 1.40736 1.79025 1.22533 0.90794
0.99746 0.92723 0.90778 1.22649 0.98929 0.98891 0.94953 1.22791
0.96084 1.02506 0.96528 1.22862 0.95866 0.99956 0.89705 1.63064
1.21545 1.21241 1.17723 1.22566 0.99200 0.88845 1.02034 0.93567
0.90333 0.94880 0.87041 0.95599 0.93568 0.95406 0.94903 0.77261
0.89805 0.90005 0.90268 0.91251 0.90145 0.92480 0.90996 0.95546
0.91085
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.50 10.85 101.05 1.10 1.59 16
2 O -0.38 -6.96 10.52 -35.23 -0.37 -7.33 16
3 C 0.05 1.05 3.18 -24.46 -0.08 0.97 16
4 H 0.07 1.17 7.69 -51.93 -0.40 0.77 16
5 C 0.14 3.49 5.63 -2.41 -0.01 3.48 16
6 N -0.60 -15.60 3.40 -169.93 -0.58 -16.18 16
7 C -0.22 -6.25 10.27 -15.06 -0.15 -6.40 16
8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16
9 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16
10 N -0.92 -26.64 10.09 55.49 0.56 -26.08 16
11 Si 0.92 22.00 29.55 -169.99 -5.02 16.97 16
12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
13 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16
14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
15 C 0.13 2.91 7.00 -3.06 -0.02 2.89 16
16 C 0.14 2.65 3.00 -66.09 -0.20 2.45 16
17 H 0.10 2.17 7.62 -51.93 -0.40 1.77 16
18 N -0.72 -11.00 5.12 -52.03 -0.27 -11.27 16
19 C 0.52 8.27 7.11 -10.99 -0.08 8.19 16
20 O -0.51 -10.53 16.27 5.56 0.09 -10.44 16
21 C 0.05 0.64 2.84 -67.34 -0.19 0.45 16
22 H 0.07 0.74 7.78 -51.93 -0.40 0.34 16
23 C -0.12 -1.10 6.48 -24.59 -0.16 -1.26 16
24 C -0.14 -1.07 6.94 -24.91 -0.17 -1.24 16
25 C 0.04 0.40 6.90 -2.84 -0.02 0.38 16
26 N -0.51 -6.27 4.69 -232.97 -1.09 -7.36 16
27 C 0.02 0.23 9.12 60.07 0.55 0.78 16
28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16
29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16
30 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16
31 H 0.11 3.00 5.87 -51.93 -0.31 2.69 16
32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16
33 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16
34 H 0.03 0.60 8.03 -51.93 -0.42 0.18 16
35 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16
36 H 0.39 4.84 8.54 -40.82 -0.35 4.49 16
37 H 0.08 0.93 8.05 -51.93 -0.42 0.51 16
38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16
40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16
41 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16
42 H 0.06 0.44 7.58 -51.93 -0.39 0.04 16
43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
44 H 0.03 0.23 8.10 -51.93 -0.42 -0.19 16
45 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
LS Contribution 360.72 15.07 5.44 5.44
Total: -1.00 -33.30 360.72 -8.48 -41.78
By element:
Atomic # 1 Polarization: 10.27 SS G_CDS: -7.70 Total: 2.58 kcal
Atomic # 6 Polarization: 11.44 SS G_CDS: 0.46 Total: 11.90 kcal
Atomic # 7 Polarization: -59.51 SS G_CDS: -1.38 Total: -60.89 kcal
Atomic # 8 Polarization: -17.50 SS G_CDS: -0.28 Total: -17.78 kcal
Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal
Total LS contribution 5.44 Total: 5.44 kcal
Total: -33.30 -8.48 -41.78 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001081435448.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.793 kcal
(2) G-P(sol) polarization free energy of solvation -33.300 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.506 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.781 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.987 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds