Wall clock time and date at job start Tue Mar 31 2020 03:58:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.42895 * 113.99942 * 2 1
4 4 H 1.08994 * 110.91914 * 26.09675 * 3 2 1
5 5 C 1.55127 * 111.16331 * 262.16368 * 3 2 1
6 6 N 1.47423 * 104.94761 * 205.13274 * 5 3 2
7 7 C 1.36936 * 125.64771 * 204.04157 * 6 5 3
8 8 H 1.07999 * 119.99832 * 179.97438 * 7 6 5
9 9 C 1.38808 * 120.00209 * 359.95958 * 7 6 5
10 10 N 1.31621 * 119.99858 * 359.97438 * 9 7 6
11 11 Si 1.86801 * 119.99945 * 180.02562 * 9 7 6
12 12 H 1.48496 * 109.47100 * 59.99809 * 11 9 7
13 13 H 1.48498 * 109.46864 * 179.97438 * 11 9 7
14 14 H 1.48502 * 109.47065 * 299.99675 * 11 9 7
15 15 C 1.47027 * 108.70006 * 24.00392 * 6 5 3
16 16 C 1.54322 * 107.27305 * 358.94289 * 15 6 5
17 17 H 1.08996 * 110.72294 * 96.34299 * 16 15 6
18 18 N 1.46499 * 110.71872 * 219.44202 * 16 15 6
19 19 C 1.34771 * 119.99934 * 271.15322 * 18 16 15
20 20 O 1.21277 * 120.00207 * 0.02562 * 19 18 16
21 21 C 1.50700 * 120.00017 * 179.97438 * 19 18 16
22 22 H 1.09000 * 110.42149 * 320.86466 * 21 19 18
23 23 C 1.54910 * 110.36935 * 83.17556 * 21 19 18
24 24 C 1.55151 * 101.64951 * 155.90061 * 23 21 19
25 25 C 1.54311 * 103.01892 * 324.34544 * 24 23 21
26 26 N 1.47449 * 107.23418 * 22.28649 * 25 24 23
27 27 C 1.46901 * 110.99907 * 123.25722 * 26 25 24
28 28 H 1.09002 * 109.46917 * 60.00445 * 1 2 3
29 29 H 1.08998 * 109.47396 * 180.02562 * 1 2 3
30 30 H 1.08997 * 109.47070 * 300.00355 * 1 2 3
31 31 H 1.09003 * 110.41324 * 86.20352 * 5 3 2
32 32 H 1.09000 * 110.20498 * 323.96063 * 5 3 2
33 33 H 0.96998 * 119.99918 * 179.97438 * 10 9 7
34 34 H 1.09001 * 109.87975 * 239.52146 * 15 6 5
35 35 H 1.09003 * 110.00389 * 118.43125 * 15 6 5
36 36 H 0.96998 * 119.99789 * 91.15832 * 18 16 15
37 37 H 1.08997 * 110.98941 * 37.81468 * 23 21 19
38 38 H 1.08999 * 111.02481 * 274.00178 * 23 21 19
39 39 H 1.09000 * 110.70111 * 205.96297 * 24 23 21
40 40 H 1.08994 * 110.85229 * 82.80062 * 24 23 21
41 41 H 1.09005 * 109.89258 * 262.87907 * 25 24 23
42 42 H 1.08998 * 109.88733 * 141.68924 * 25 24 23
43 43 H 1.09002 * 109.47401 * 59.87266 * 27 26 25
44 44 H 1.09001 * 109.46874 * 299.87279 * 27 26 25
45 45 H 1.09004 * 109.46970 * 179.87412 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 1 1.3332 2.0328 0.4479
5 6 2.4182 1.7368 -1.4331
6 7 3.4968 2.7232 -1.2408
7 6 3.8517 3.7014 -2.1308
8 1 4.6597 4.3784 -1.8954
9 6 3.1734 3.8228 -3.3358
10 7 2.1893 2.9973 -3.6230
11 14 3.6581 5.1568 -4.5502
12 1 5.0748 4.9681 -4.9535
13 1 2.7871 5.0740 -5.7501
14 1 3.4981 6.4885 -3.9127
15 6 4.1276 2.4832 0.0654
16 6 3.3824 1.3033 0.7243
17 1 3.9105 0.3664 0.5471
18 7 3.2108 1.5357 2.1605
19 6 4.1626 1.1351 3.0264
20 8 5.1614 0.5825 2.6167
21 6 3.9864 1.3747 4.5038
22 1 3.5353 2.3513 4.6795
23 6 3.1156 0.2576 5.1311
24 6 3.5664 0.3050 6.6149
25 6 5.0699 0.6364 6.5110
26 7 5.2868 1.2756 5.2001
27 6 5.9029 2.6001 5.3557
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3634 -1.0276 0.0005
30 1 -0.3633 0.5139 0.8899
31 1 1.5730 2.1943 -1.9475
32 1 2.7853 0.8778 -1.9947
33 1 1.7150 3.0824 -4.4648
34 1 4.0385 3.3727 0.6891
35 1 5.1789 2.2289 -0.0693
36 1 2.4121 1.9779 2.4882
37 1 3.3420 -0.7108 4.6850
38 1 2.0547 0.4899 5.0378
39 1 3.4173 -0.6626 7.0940
40 1 3.0358 1.0877 7.1568
41 1 5.6572 -0.2794 6.5786
42 1 5.3546 1.3218 7.3093
43 1 6.8640 2.4969 5.8595
44 1 5.2481 3.2379 5.9495
45 1 6.0538 3.0483 4.3736
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001081435448.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:58:07
Heat of formation + Delta-G solvation = -60.787300 kcal
Electronic energy + Delta-G solvation = -25201.170324 eV
Core-core repulsion = 21639.903649 eV
Total energy + Delta-G solvation = -3561.266675 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-41.34935 -40.04747 -38.74377 -37.49772 -35.57427 -33.73427 -32.99315 -31.08055
-30.15651 -28.64669 -27.49365 -26.64536 -26.08075 -23.62931 -22.38240 -22.05282
-21.67197 -20.90225 -19.15457 -18.42409 -17.88102 -17.29648 -16.98346 -16.39180
-16.19621 -15.96792 -15.75941 -15.42373 -15.30700 -14.98992 -14.71577 -14.33040
-14.25717 -13.96464 -13.72119 -13.56237 -13.19789 -13.12524 -12.98006 -12.70250
-12.58305 -12.45953 -12.34682 -12.26937 -12.09167 -12.06570 -11.90227 -11.64079
-11.58108 -10.88229 -10.79173 -10.52594 -10.07609 -9.26213 -8.98400 -7.81351
-5.29054 1.46750 1.50601 1.56827 1.64866 1.98323 2.44833 2.74790
3.07998 3.29313 3.52466 3.61009 3.67232 3.80099 3.95697 3.99151
4.04293 4.10502 4.21296 4.35736 4.43575 4.46472 4.48319 4.57480
4.61970 4.67333 4.78797 4.82943 4.89257 4.90719 4.94454 4.96498
4.99516 5.08889 5.28728 5.31889 5.43197 5.47084 5.67419 5.87814
6.09094 6.18388 6.31795 6.61953 7.03776 7.33217 7.68183 8.30994
9.19860
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.019916 B = 0.003857 C = 0.003345
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1405.591502 B = 7257.403797 C = 8368.024954
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.396 6.396
3 C 0.079 3.921
4 H 0.092 0.908
5 C 0.147 3.853
6 N -0.618 5.618
7 C -0.247 4.247
8 H 0.082 0.918
9 C -0.060 4.060
10 N -0.947 5.947
11 Si 0.985 3.015
12 H -0.282 1.282
13 H -0.290 1.290
14 H -0.272 1.272
15 C 0.133 3.867
16 C 0.154 3.846
17 H 0.073 0.927
18 N -0.704 5.704
19 C 0.517 3.483
20 O -0.568 6.568
21 C 0.060 3.940
22 H 0.101 0.899
23 C -0.114 4.114
24 C -0.130 4.130
25 C 0.041 3.959
26 N -0.547 5.547
27 C 0.024 3.976
28 H 0.035 0.965
29 H 0.103 0.897
30 H 0.063 0.937
31 H 0.089 0.911
32 H -0.014 1.014
33 H 0.251 0.749
34 H 0.041 0.959
35 H 0.011 0.989
36 H 0.414 0.586
37 H 0.060 0.940
38 H 0.107 0.893
39 H 0.092 0.908
40 H 0.091 0.909
41 H 0.070 0.930
42 H 0.076 0.924
43 H 0.078 0.922
44 H 0.049 0.951
45 H 0.047 0.953
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.532 -2.517 22.568 23.155
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 O -0.314 6.314
3 C 0.020 3.980
4 H 0.110 0.890
5 C 0.021 3.979
6 N -0.346 5.346
7 C -0.376 4.376
8 H 0.099 0.901
9 C -0.253 4.253
10 N -0.595 5.595
11 Si 0.812 3.188
12 H -0.208 1.208
13 H -0.216 1.216
14 H -0.198 1.198
15 C 0.006 3.994
16 C 0.048 3.952
17 H 0.091 0.909
18 N -0.357 5.357
19 C 0.303 3.697
20 O -0.445 6.445
21 C -0.052 4.052
22 H 0.119 0.881
23 C -0.152 4.152
24 C -0.168 4.168
25 C -0.086 4.086
26 N -0.272 5.272
27 C -0.124 4.124
28 H 0.054 0.946
29 H 0.121 0.879
30 H 0.082 0.918
31 H 0.106 0.894
32 H 0.004 0.996
33 H 0.060 0.940
34 H 0.059 0.941
35 H 0.029 0.971
36 H 0.251 0.749
37 H 0.079 0.921
38 H 0.126 0.874
39 H 0.110 0.890
40 H 0.109 0.891
41 H 0.089 0.911
42 H 0.094 0.906
43 H 0.097 0.903
44 H 0.068 0.932
45 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -3.396 -3.311 21.816 22.326
hybrid contribution -0.339 1.317 -0.835 1.596
sum -3.735 -1.994 20.981 21.404
Atomic orbital electron populations
1.22999 0.79205 1.03936 1.00792 1.87847 1.21840 1.26824 1.94934
1.23625 0.93121 0.84905 0.96384 0.88995 1.22095 0.93155 0.90193
0.92498 1.44545 1.37904 1.35369 1.16784 1.19422 1.14171 1.06930
0.97063 0.90066 1.25658 0.98575 1.01595 0.99457 1.69987 1.25251
1.40058 1.24254 0.85064 0.77155 0.78678 0.77867 1.20844 1.21585
1.19769 1.21647 0.94884 0.95707 0.87137 1.21582 0.95848 0.97464
0.80319 0.90863 1.45791 1.23473 1.61406 1.05063 1.21176 0.82038
0.77221 0.89219 1.90678 1.30524 1.43093 1.80197 1.22540 0.91520
1.01933 0.89214 0.88110 1.22694 0.99910 0.96774 0.95864 1.22780
0.94689 1.04031 0.95291 1.22912 0.97194 0.99758 0.88707 1.62925
1.22237 1.22320 1.19689 1.22536 1.00125 0.88613 1.01125 0.94624
0.87891 0.91842 0.89366 0.99594 0.93979 0.94120 0.97145 0.74924
0.92066 0.87431 0.88987 0.89069 0.91146 0.90609 0.90325 0.93208
0.93451
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.69 10.85 113.37 1.23 1.92 16
2 O -0.40 -14.24 10.52 -148.98 -1.57 -15.80 16
3 C 0.08 3.04 3.18 32.07 0.10 3.14 16
4 H 0.09 3.06 7.69 -2.39 -0.02 3.05 16
5 C 0.15 7.46 5.63 86.93 0.49 7.95 16
6 N -0.62 -33.12 3.40 -691.54 -2.35 -35.47 16
7 C -0.25 -14.17 10.27 84.03 0.86 -13.30 16
8 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16
9 C -0.06 -3.40 5.49 84.86 0.47 -2.94 16
10 N -0.95 -56.03 10.09 21.65 0.22 -55.81 16
11 Si 0.99 45.58 29.55 68.60 2.03 47.61 16
12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16
13 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16
14 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16
15 C 0.13 6.06 7.00 86.73 0.61 6.66 16
16 C 0.15 6.02 3.00 46.18 0.14 6.15 16
17 H 0.07 3.29 7.62 -2.39 -0.02 3.28 16
18 N -0.70 -20.68 5.12 -436.92 -2.24 -22.92 16
19 C 0.52 16.15 7.11 87.66 0.62 16.77 16
20 O -0.57 -23.91 16.27 -3.02 -0.05 -23.96 16
21 C 0.06 1.28 2.84 44.64 0.13 1.40 16
22 H 0.10 1.63 7.78 -2.39 -0.02 1.62 16
23 C -0.11 -1.83 6.48 31.98 0.21 -1.62 16
24 C -0.13 -1.49 6.94 31.78 0.22 -1.27 16
25 C 0.04 0.66 6.90 86.64 0.60 1.25 16
26 N -0.55 -12.58 4.69 -890.99 -4.18 -16.76 16
27 C 0.02 0.47 9.12 127.69 1.16 1.64 16
28 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16
29 H 0.10 2.18 8.14 -2.39 -0.02 2.17 16
30 H 0.06 1.29 8.12 -2.39 -0.02 1.27 16
31 H 0.09 4.91 5.87 -2.39 -0.01 4.90 16
32 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16
33 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16
34 H 0.04 1.75 8.03 -2.39 -0.02 1.73 16
35 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16
36 H 0.41 8.94 8.54 -92.71 -0.79 8.14 16
37 H 0.06 1.27 8.05 -2.39 -0.02 1.25 16
38 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16
39 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16
40 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16
41 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16
42 H 0.08 0.91 7.58 -2.39 -0.02 0.89 16
43 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16
44 H 0.05 0.73 8.10 -2.39 -0.02 0.71 16
45 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16
Total: -1.00 -76.23 360.72 -1.12 -77.36
By element:
Atomic # 1 Polarization: 17.83 SS G_CDS: 0.18 Total: 18.00 kcal
Atomic # 6 Polarization: 20.92 SS G_CDS: 6.84 Total: 27.76 kcal
Atomic # 7 Polarization: -122.41 SS G_CDS: -8.55 Total: -130.96 kcal
Atomic # 8 Polarization: -38.15 SS G_CDS: -1.62 Total: -39.77 kcal
Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal
Total: -76.23 -1.12 -77.36 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001081435448.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.568 kcal
(2) G-P(sol) polarization free energy of solvation -76.233 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.666 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.122 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.355 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.787 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds