Wall clock time and date at job start Tue Mar 31 2020 03:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42892 * 114.00593 * 2 1 4 4 H 1.09001 * 110.88692 * 32.43093 * 3 2 1 5 5 C 1.54907 * 111.00746 * 268.55150 * 3 2 1 6 6 N 1.47420 * 104.83524 * 204.91501 * 5 3 2 7 7 C 1.36935 * 125.65209 * 204.16221 * 6 5 3 8 8 H 1.08004 * 120.00235 * 179.97438 * 7 6 5 9 9 C 1.38816 * 119.99734 * 359.95746 * 7 6 5 10 10 N 1.31614 * 120.00076 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00049 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47191 * 59.99988 * 11 9 7 13 13 H 1.48491 * 109.47370 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46931 * 300.00230 * 11 9 7 15 15 C 1.47026 * 108.70428 * 24.12518 * 6 5 3 16 16 C 1.54330 * 107.26840 * 358.94103 * 15 6 5 17 17 H 1.08998 * 110.71700 * 96.16950 * 16 15 6 18 18 N 1.46495 * 110.72220 * 219.44076 * 16 15 6 19 19 C 1.34778 * 120.00419 * 273.55342 * 18 16 15 20 20 O 1.21279 * 119.99538 * 359.97438 * 19 18 16 21 21 C 1.50701 * 120.00038 * 179.97438 * 19 18 16 22 22 H 1.08991 * 110.62647 * 61.64657 * 21 19 18 23 23 C 1.55143 * 110.70233 * 184.94293 * 21 19 18 24 24 C 1.54905 * 101.65132 * 154.03609 * 23 21 19 25 25 N 1.47852 * 104.79552 * 322.92898 * 24 23 21 26 26 C 1.46899 * 110.99902 * 146.36546 * 25 24 23 27 27 C 1.47440 * 108.56551 * 24.09317 * 25 24 23 28 28 H 1.08996 * 109.47388 * 59.99216 * 1 2 3 29 29 H 1.08995 * 109.47485 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46862 * 299.99886 * 1 2 3 31 31 H 1.08997 * 110.36783 * 86.07220 * 5 3 2 32 32 H 1.08999 * 110.36448 * 323.74961 * 5 3 2 33 33 H 0.97002 * 119.99964 * 180.02562 * 10 9 7 34 34 H 1.08998 * 109.88351 * 118.35702 * 15 6 5 35 35 H 1.08998 * 109.88379 * 239.52492 * 15 6 5 36 36 H 0.97005 * 119.99930 * 93.54212 * 18 16 15 37 37 H 1.09001 * 110.98926 * 272.12811 * 23 21 19 38 38 H 1.09005 * 110.99341 * 35.94315 * 23 21 19 39 39 H 1.08999 * 110.37245 * 204.10318 * 24 23 21 40 40 H 1.08999 * 110.46868 * 81.80638 * 24 23 21 41 41 H 1.08995 * 109.46881 * 299.15664 * 26 25 24 42 42 H 1.08999 * 109.46937 * 59.15794 * 26 25 24 43 43 H 1.08993 * 109.46888 * 179.15631 * 26 25 24 44 44 H 1.08997 * 109.88873 * 239.60272 * 27 25 24 45 45 H 1.09008 * 110.02003 * 118.49061 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3832 2.0100 0.5461 5 6 2.2696 1.7977 -1.4456 6 7 3.3612 2.7805 -1.3195 7 6 3.6230 3.7995 -2.1961 8 1 4.4500 4.4697 -2.0136 9 6 2.8255 3.9708 -3.3193 10 7 1.8176 3.1542 -3.5415 11 14 3.1821 5.3612 -4.5147 12 1 4.5508 5.1999 -5.0677 13 1 2.1932 5.3280 -5.6219 14 1 3.0854 6.6617 -3.8043 15 6 4.1218 2.4860 -0.0963 16 6 3.4486 1.2736 0.5810 17 1 3.9550 0.3483 0.3067 18 7 3.4237 1.4407 2.0362 19 6 4.4796 1.0510 2.7776 20 8 5.4504 0.5616 2.2399 21 6 4.4541 1.2234 4.2745 22 1 3.6417 0.6447 4.7138 23 6 5.8176 0.8216 4.8961 24 6 5.8299 1.6656 6.1951 25 7 5.1945 2.9465 5.8191 26 6 4.4277 3.5032 6.9417 27 6 4.3269 2.7148 4.6498 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.3762 2.2730 -1.8505 32 1 2.5788 0.9668 -2.0797 33 1 1.2605 3.2737 -4.3266 34 1 5.1534 2.2428 -0.3507 35 1 4.0957 3.3461 0.5727 36 1 2.6471 1.8319 2.4663 37 1 5.8445 -0.2442 5.1227 38 1 6.6429 1.1009 4.2411 39 1 6.8539 1.8335 6.5287 40 1 5.2533 1.1708 6.9766 41 1 3.6392 2.8057 7.2243 42 1 5.0918 3.6644 7.7908 43 1 3.9832 4.4524 6.6427 44 1 4.6541 3.3362 3.8163 45 1 3.2918 2.9468 4.9012 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082368993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:39 Heat of formation + Delta-G solvation = -39.913432 kcal Electronic energy + Delta-G solvation = -25074.347058 eV Core-core repulsion = 21513.985542 eV Total energy + Delta-G solvation = -3560.361516 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.26838 -38.73566 -37.74011 -35.90713 -34.06588 -32.44931 -31.69954 -29.56029 -28.63352 -27.08700 -26.13824 -25.99156 -24.29616 -22.44790 -21.24228 -20.68001 -20.25955 -19.60553 -17.57672 -16.94272 -16.50491 -16.29296 -15.50035 -15.36012 -14.72843 -14.71087 -14.32485 -14.28338 -14.07661 -13.69707 -13.57387 -13.21282 -13.03864 -12.58580 -12.26538 -12.07440 -11.90352 -11.85927 -11.58467 -11.43556 -11.29778 -11.27808 -11.03255 -11.00438 -10.81847 -10.79569 -10.22008 -9.90445 -9.80405 -9.68276 -9.05385 -8.71382 -8.69367 -8.60986 -6.90577 -5.70064 -3.12965 2.77118 3.27496 3.39771 3.43807 3.45261 3.73854 4.10304 4.25941 4.44266 4.49975 4.71918 5.02636 5.04995 5.07789 5.12472 5.21523 5.24253 5.34339 5.42155 5.49775 5.58601 5.60141 5.62686 5.68063 5.68403 5.75067 5.82970 5.85018 5.94904 6.06921 6.09895 6.20535 6.48582 6.63781 6.69543 6.75961 6.89632 7.23931 7.54583 7.67188 7.71999 7.77998 8.25824 8.40181 9.15593 9.76015 10.38534 11.33781 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.016717 B = 0.003844 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.580845 B = 7282.823066 C = 8182.142314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.382 6.382 3 C 0.054 3.946 4 H 0.066 0.934 5 C 0.140 3.860 6 N -0.600 5.600 7 C -0.223 4.223 8 H 0.080 0.920 9 C -0.010 4.010 10 N -0.924 5.924 11 Si 0.917 3.083 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.285 1.285 15 C 0.131 3.869 16 C 0.138 3.862 17 H 0.100 0.900 18 N -0.715 5.715 19 C 0.524 3.476 20 O -0.535 6.535 21 C -0.133 4.133 22 H 0.100 0.900 23 C -0.108 4.108 24 C 0.040 3.960 25 N -0.533 5.533 26 C 0.019 3.981 27 C 0.051 3.949 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.033 0.967 31 H 0.112 0.888 32 H 0.026 0.974 33 H 0.254 0.746 34 H 0.034 0.966 35 H 0.030 0.970 36 H 0.396 0.604 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.027 0.973 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.968 -3.626 19.497 19.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.300 6.300 3 C -0.005 4.005 4 H 0.084 0.916 5 C 0.014 3.986 6 N -0.328 5.328 7 C -0.351 4.351 8 H 0.098 0.902 9 C -0.205 4.205 10 N -0.572 5.572 11 Si 0.748 3.252 12 H -0.211 1.211 13 H -0.215 1.215 14 H -0.211 1.211 15 C 0.004 3.996 16 C 0.033 3.967 17 H 0.118 0.882 18 N -0.365 5.365 19 C 0.309 3.691 20 O -0.411 6.411 21 C -0.155 4.155 22 H 0.118 0.882 23 C -0.146 4.146 24 C -0.088 4.088 25 N -0.257 5.257 26 C -0.130 4.130 27 C -0.077 4.077 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.051 0.949 31 H 0.130 0.870 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.230 0.770 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.065 0.935 41 H 0.045 0.955 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.105 0.895 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.143 -3.693 18.779 19.139 hybrid contribution -1.158 0.496 -0.178 1.272 sum -1.015 -3.197 18.601 18.901 Atomic orbital electron populations 1.22693 0.81567 1.01885 1.00033 1.87839 1.19264 1.27762 1.95147 1.24023 0.92139 0.83721 1.00616 0.91624 1.22323 0.95355 0.91909 0.88993 1.44296 1.31826 1.33113 1.23585 1.19063 1.11180 1.04168 1.00700 0.90227 1.24795 0.98019 0.99319 0.98386 1.69738 1.19956 1.38688 1.28866 0.86107 0.77392 0.81339 0.80400 1.21083 1.21540 1.21107 1.21606 0.95223 0.93584 0.89167 1.22115 0.96381 1.00266 0.77939 0.88160 1.46023 1.19197 1.63537 1.07721 1.20216 0.82735 0.77647 0.88474 1.90709 1.33012 1.43826 1.73514 1.22591 1.00923 0.98592 0.93408 0.88208 1.22596 0.96347 0.99884 0.95789 1.23122 1.00211 0.88589 0.96835 1.63577 1.30355 1.26188 1.05552 1.22564 0.96743 0.99757 0.93891 1.22833 0.96377 0.93771 0.94693 0.93374 0.90346 0.94858 0.87017 0.95593 0.93568 0.94816 0.95224 0.77001 0.90297 0.89010 0.89808 0.93462 0.95458 0.91301 0.91178 0.89550 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.89 101.05 1.10 1.60 16 2 O -0.38 -6.93 10.51 -35.23 -0.37 -7.31 16 3 C 0.05 1.04 3.10 -24.58 -0.08 0.96 16 4 H 0.07 1.16 7.76 -51.93 -0.40 0.75 16 5 C 0.14 3.40 5.62 -2.53 -0.01 3.38 16 6 N -0.60 -15.47 3.39 -170.07 -0.58 -16.05 16 7 C -0.22 -6.22 10.27 -15.06 -0.15 -6.37 16 8 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 9 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 10 N -0.92 -26.52 10.09 55.49 0.56 -25.97 16 11 Si 0.92 21.94 29.55 -169.99 -5.02 16.92 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 C 0.13 2.88 6.99 -3.06 -0.02 2.85 16 16 C 0.14 2.60 2.97 -66.10 -0.20 2.40 16 17 H 0.10 2.10 7.70 -51.93 -0.40 1.70 16 18 N -0.71 -10.59 5.07 -52.03 -0.26 -10.85 16 19 C 0.52 7.87 7.01 -10.98 -0.08 7.80 16 20 O -0.53 -10.21 15.49 5.56 0.09 -10.13 16 21 C -0.13 -1.45 3.34 -89.95 -0.30 -1.75 16 22 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 23 C -0.11 -1.15 6.13 -24.59 -0.15 -1.30 16 24 C 0.04 0.36 6.73 -2.29 -0.02 0.34 16 25 N -0.53 -5.40 5.44 -239.52 -1.30 -6.70 16 26 C 0.02 0.15 9.12 60.06 0.55 0.70 16 27 C 0.05 0.53 6.42 -2.84 -0.02 0.51 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.03 0.40 8.11 -51.93 -0.42 -0.02 16 31 H 0.11 2.98 5.87 -51.93 -0.30 2.67 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.03 0.63 8.03 -51.93 -0.42 0.22 16 36 H 0.40 4.75 8.51 -40.82 -0.35 4.40 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.09 1.19 7.49 -51.93 -0.39 0.80 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.36 7.78 -51.93 -0.40 -0.04 16 41 H 0.03 0.19 8.10 -51.93 -0.42 -0.23 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 1.05 7.81 -51.93 -0.41 0.65 16 45 H 0.06 0.53 7.59 -51.92 -0.39 0.14 16 LS Contribution 359.14 15.07 5.41 5.41 Total: -1.00 -32.29 359.14 -8.61 -40.90 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.66 Total: 3.02 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 0.53 Total: 10.76 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -1.59 Total: -59.57 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.28 Total: -17.43 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.29 -8.61 -40.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082368993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.983 kcal (2) G-P(sol) polarization free energy of solvation -32.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds