Wall clock time and date at job start Tue Mar 31 2020 03:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46852 * 110.99766 * 2 1 4 4 C 1.53034 * 109.52326 * 185.84218 * 3 2 1 5 5 C 1.53116 * 109.27996 * 300.81832 * 4 3 2 6 6 C 1.50705 * 109.52357 * 177.55815 * 5 4 3 7 7 O 1.21279 * 119.99799 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00023 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00449 * 180.02562 * 8 6 5 10 10 H 1.09006 * 110.88087 * 31.11617 * 9 8 6 11 11 C 1.55129 * 111.22741 * 267.21047 * 9 8 6 12 12 N 1.47426 * 104.72269 * 279.17245 * 11 9 8 13 13 C 1.36936 * 125.64969 * 155.81158 * 12 11 9 14 14 H 1.07997 * 119.99957 * 333.60040 * 13 12 11 15 15 C 1.38810 * 119.99669 * 153.59750 * 13 12 11 16 16 N 1.31617 * 120.00105 * 145.64335 * 15 13 12 17 17 Si 1.86799 * 120.00164 * 325.63542 * 15 13 12 18 18 H 1.48501 * 109.47342 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47371 * 240.00016 * 17 15 13 20 20 H 1.48504 * 109.47044 * 120.00056 * 17 15 13 21 21 C 1.47022 * 108.69937 * 335.55611 * 12 11 9 22 22 C 1.54325 * 107.27534 * 1.28109 * 21 12 11 23 23 H 1.08999 * 110.72129 * 263.66202 * 22 21 12 24 24 O 1.42900 * 110.71874 * 140.55672 * 22 21 12 25 25 C 1.53120 * 109.15717 * 57.65865 * 5 4 3 26 26 C 1.46841 * 111.00737 * 124.21039 * 2 1 3 27 27 H 1.08998 * 109.47333 * 60.00296 * 1 2 3 28 28 H 1.09010 * 109.46660 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47123 * 299.99283 * 1 2 3 30 30 H 1.08996 * 109.46105 * 65.82638 * 3 2 1 31 31 H 1.09003 * 109.46182 * 305.86129 * 3 2 1 32 32 H 1.09003 * 109.50344 * 180.87830 * 4 3 2 33 33 H 1.09004 * 109.53915 * 60.78386 * 4 3 2 34 34 H 1.08991 * 109.52618 * 297.68834 * 5 4 3 35 35 H 0.97008 * 119.99910 * 0.02562 * 8 6 5 36 36 H 1.08995 * 110.49925 * 160.33012 * 11 9 8 37 37 H 1.09003 * 110.34175 * 37.93228 * 11 9 8 38 38 H 0.97004 * 119.99870 * 5.05282 * 16 15 13 39 39 H 1.08999 * 109.88375 * 120.70726 * 21 12 11 40 40 H 1.09003 * 109.88003 * 241.86849 * 21 12 11 41 41 H 0.96703 * 113.99484 * 61.46350 * 24 22 21 42 42 H 1.09003 * 109.50779 * 62.28475 * 25 5 4 43 43 H 1.09005 * 109.50391 * 182.40610 * 25 5 4 44 44 H 1.09001 * 109.46294 * 294.18210 * 26 2 1 45 45 H 1.09005 * 109.45925 * 54.14736 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5180 1.3343 -0.1468 5 6 4.1188 0.5372 1.0143 6 6 5.6134 0.4466 0.8429 7 8 6.1468 0.9683 -0.1132 8 7 6.3570 -0.2142 1.7521 9 6 7.8099 -0.3018 1.5859 10 1 8.1973 0.5831 1.0809 11 6 8.2114 -1.5931 0.8257 12 7 8.1877 -2.6535 1.8498 13 6 8.0121 -3.9903 1.6105 14 1 7.4710 -4.3155 0.7343 15 6 8.5296 -4.9273 2.4942 16 7 7.8839 -6.0533 2.7122 17 14 10.1426 -4.5903 3.3741 18 1 10.6651 -3.2636 2.9592 19 1 11.1284 -5.6434 3.0212 20 1 9.9164 -4.5958 4.8418 21 6 8.3900 -2.0385 3.1698 22 6 8.5141 -0.5158 2.9518 23 1 9.5613 -0.2177 2.8997 24 8 7.8374 0.1999 3.9871 25 6 3.5183 -0.8713 1.0207 26 6 1.9954 -0.7707 1.1336 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.7324 1.8608 0.9376 31 1 1.5632 1.9258 -0.8329 32 1 3.9098 2.3514 -0.1311 33 1 3.7819 0.8573 -1.0908 34 1 3.8897 1.0361 1.9558 35 1 5.9303 -0.6318 2.5166 36 1 9.2124 -1.4934 0.4061 37 1 7.4890 -1.8097 0.0387 38 1 7.0856 -6.2612 2.2018 39 1 7.5367 -2.2526 3.8132 40 1 9.3038 -2.4239 3.6221 41 1 8.1911 0.0388 4.8725 42 1 3.7814 -1.3835 0.0951 43 1 3.9101 -1.4302 1.8706 44 1 1.7326 -0.2709 2.0659 45 1 1.5636 -1.7716 1.1241 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083749152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:57 Heat of formation + Delta-G solvation = -56.606653 kcal Electronic energy + Delta-G solvation = -25459.644434 eV Core-core repulsion = 21898.559046 eV Total energy + Delta-G solvation = -3561.085388 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.18534 -38.81275 -37.71954 -35.31661 -33.83843 -33.53374 -31.95411 -30.91009 -28.91120 -27.73999 -27.00265 -24.09760 -23.39134 -23.16171 -20.98961 -20.73176 -19.88255 -19.50500 -17.67168 -17.16529 -16.95931 -16.08703 -15.55163 -15.31242 -15.19258 -14.89228 -14.67997 -14.16651 -13.76891 -13.69066 -13.35613 -13.29249 -12.98922 -12.70922 -12.56183 -12.52126 -12.20962 -11.80354 -11.74807 -11.33694 -11.30268 -11.24426 -11.14000 -10.90143 -10.71642 -10.56015 -10.46940 -9.98049 -9.52631 -9.44132 -9.34773 -8.74259 -8.50148 -8.27267 -7.13867 -6.36932 -3.32027 2.92608 3.37265 3.45095 3.47612 3.59371 3.76031 4.28215 4.52515 4.60244 4.69969 4.81992 4.89668 4.98827 5.10465 5.15441 5.18081 5.22130 5.26223 5.34654 5.44014 5.45095 5.48147 5.49769 5.65157 5.65916 5.70707 5.84256 5.88354 5.99090 6.03661 6.17861 6.26497 6.33342 6.50007 6.56306 6.57321 6.88632 6.91297 6.93677 7.75537 7.80727 7.90562 8.31590 8.55542 8.95301 9.53443 10.26092 10.99907 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.018960 B = 0.004246 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.464861 B = 6593.115861 C = 7410.433848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.056 3.944 4 C -0.095 4.095 5 C -0.105 4.105 6 C 0.520 3.480 7 O -0.552 6.552 8 N -0.693 5.693 9 C 0.142 3.858 10 H 0.096 0.904 11 C 0.116 3.884 12 N -0.595 5.595 13 C -0.341 4.341 14 H 0.068 0.932 15 C -0.005 4.005 16 N -0.901 5.901 17 Si 1.049 2.951 18 H -0.281 1.281 19 H -0.296 1.296 20 H -0.293 1.293 21 C 0.094 3.906 22 C 0.080 3.920 23 H 0.075 0.925 24 O -0.560 6.560 25 C -0.108 4.108 26 C 0.059 3.941 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.023 0.977 30 H 0.032 0.968 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.405 0.595 36 H 0.033 0.967 37 H 0.053 0.947 38 H 0.266 0.734 39 H 0.044 0.956 40 H 0.033 0.967 41 H 0.377 0.623 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.034 0.966 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.907 14.739 0.574 17.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.071 4.071 4 C -0.133 4.133 5 C -0.127 4.127 6 C 0.306 3.694 7 O -0.430 6.430 8 N -0.342 5.342 9 C 0.036 3.964 10 H 0.114 0.886 11 C -0.010 4.010 12 N -0.324 5.324 13 C -0.469 4.469 14 H 0.086 0.914 15 C -0.209 4.209 16 N -0.539 5.539 17 Si 0.880 3.120 18 H -0.208 1.208 19 H -0.224 1.224 20 H -0.220 1.220 21 C -0.032 4.032 22 C 0.020 3.980 23 H 0.092 0.908 24 O -0.364 6.364 25 C -0.146 4.146 26 C -0.069 4.069 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.240 0.760 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.225 0.775 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.052 0.948 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.697 14.389 0.060 16.813 hybrid contribution -0.980 0.399 0.518 1.178 sum -9.677 14.788 0.579 17.682 Atomic orbital electron populations 1.22344 0.87341 1.02109 1.00461 1.61915 1.07462 1.13902 1.43688 1.22130 0.95634 0.88981 1.00389 1.21389 0.92976 1.00369 0.98576 1.21350 0.91829 0.98490 1.01020 1.20480 0.89013 0.77704 0.82234 1.90658 1.73900 1.47600 1.30828 1.45527 1.07021 1.54673 1.27007 1.22184 0.80441 0.99440 0.94361 0.88562 1.22181 0.98432 0.87313 0.93100 1.44536 1.86116 1.02802 0.98926 1.19773 1.33629 0.79319 1.14141 0.91429 1.26049 1.02191 0.93814 0.98803 1.70912 1.18882 1.28653 1.35410 0.84035 0.77561 0.74794 0.75578 1.20751 1.22430 1.22037 1.22329 0.99605 0.90576 0.90696 1.23210 0.95233 0.92075 0.87484 0.90761 1.86459 1.61503 1.70012 1.18445 1.21585 0.94221 0.94912 1.03917 1.22087 0.95237 0.98438 0.91161 0.91406 0.91328 0.95838 0.94977 0.90526 0.90884 0.90139 0.89161 0.76038 0.94947 0.92870 0.92293 0.93795 0.94941 0.77546 0.90250 0.90509 0.94762 0.90260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.59 60.06 0.58 0.80 16 2 N -0.54 -5.95 4.91 -242.96 -1.19 -7.14 16 3 C 0.06 0.58 5.46 -3.83 -0.02 0.56 16 4 C -0.09 -1.16 4.68 -26.65 -0.12 -1.28 16 5 C -0.11 -1.35 2.59 -91.65 -0.24 -1.59 16 6 C 0.52 8.49 7.16 -10.99 -0.08 8.41 16 7 O -0.55 -10.69 15.62 5.56 0.09 -10.61 16 8 N -0.69 -11.40 4.72 -51.62 -0.24 -11.64 16 9 C 0.14 2.50 3.31 -65.66 -0.22 2.28 16 10 H 0.10 1.68 7.54 -51.93 -0.39 1.29 16 11 C 0.12 2.41 6.95 -2.41 -0.02 2.39 16 12 N -0.60 -14.06 3.05 -169.93 -0.52 -14.58 16 13 C -0.34 -9.49 10.24 -15.06 -0.15 -9.64 16 14 H 0.07 2.03 8.06 -52.49 -0.42 1.61 16 15 C 0.00 -0.13 5.29 -17.43 -0.09 -0.22 16 16 N -0.90 -27.15 13.70 55.49 0.76 -26.39 16 17 Si 1.05 25.35 26.22 -169.99 -4.46 20.89 16 18 H -0.28 -6.35 6.18 56.52 0.35 -6.00 16 19 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 C 0.09 1.89 5.80 -3.06 -0.02 1.88 16 22 C 0.08 1.30 4.12 -24.90 -0.10 1.20 16 23 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 24 O -0.56 -7.82 12.67 -35.23 -0.45 -8.26 16 25 C -0.11 -1.37 5.26 -26.65 -0.14 -1.51 16 26 C 0.06 0.64 5.46 -3.84 -0.02 0.62 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.55 8.09 -51.92 -0.42 0.13 16 29 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.40 6.41 7.87 -40.82 -0.32 6.09 16 36 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.27 7.99 8.73 -40.82 -0.36 7.63 16 39 H 0.04 0.92 8.06 -51.93 -0.42 0.50 16 40 H 0.03 0.69 3.85 -51.93 -0.20 0.49 16 41 H 0.38 3.71 9.11 45.56 0.42 4.13 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.08 0.98 7.66 -51.93 -0.40 0.58 16 44 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.08 0.83 8.09 -51.93 -0.42 0.41 16 LS Contribution 351.84 15.07 5.30 5.30 Total: -1.00 -32.64 351.84 -8.21 -40.85 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.85 Total: 7.70 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -0.65 Total: 3.88 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -1.20 Total: -59.75 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.36 Total: -18.87 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -4.46 Total: 20.89 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.64 -8.21 -40.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083749152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.761 kcal (2) G-P(sol) polarization free energy of solvation -32.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds