Wall clock time and date at job start Tue Mar 31 2020 03:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46852 * 110.99766 * 2 1 4 4 C 1.53034 * 109.52326 * 185.84218 * 3 2 1 5 5 C 1.53116 * 109.27996 * 300.81832 * 4 3 2 6 6 C 1.50705 * 109.52357 * 177.55815 * 5 4 3 7 7 O 1.21279 * 119.99799 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00023 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00449 * 180.02562 * 8 6 5 10 10 H 1.09006 * 110.88087 * 31.11617 * 9 8 6 11 11 C 1.55129 * 111.22741 * 267.21047 * 9 8 6 12 12 N 1.47426 * 104.72269 * 279.17245 * 11 9 8 13 13 C 1.36936 * 125.64969 * 155.81158 * 12 11 9 14 14 H 1.07997 * 119.99957 * 333.60040 * 13 12 11 15 15 C 1.38810 * 119.99669 * 153.59750 * 13 12 11 16 16 N 1.31617 * 120.00105 * 145.64335 * 15 13 12 17 17 Si 1.86799 * 120.00164 * 325.63542 * 15 13 12 18 18 H 1.48501 * 109.47342 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47371 * 240.00016 * 17 15 13 20 20 H 1.48504 * 109.47044 * 120.00056 * 17 15 13 21 21 C 1.47022 * 108.69937 * 335.55611 * 12 11 9 22 22 C 1.54325 * 107.27534 * 1.28109 * 21 12 11 23 23 H 1.08999 * 110.72129 * 263.66202 * 22 21 12 24 24 O 1.42900 * 110.71874 * 140.55672 * 22 21 12 25 25 C 1.53120 * 109.15717 * 57.65865 * 5 4 3 26 26 C 1.46841 * 111.00737 * 124.21039 * 2 1 3 27 27 H 1.08998 * 109.47333 * 60.00296 * 1 2 3 28 28 H 1.09010 * 109.46660 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47123 * 299.99283 * 1 2 3 30 30 H 1.08996 * 109.46105 * 65.82638 * 3 2 1 31 31 H 1.09003 * 109.46182 * 305.86129 * 3 2 1 32 32 H 1.09003 * 109.50344 * 180.87830 * 4 3 2 33 33 H 1.09004 * 109.53915 * 60.78386 * 4 3 2 34 34 H 1.08991 * 109.52618 * 297.68834 * 5 4 3 35 35 H 0.97008 * 119.99910 * 0.02562 * 8 6 5 36 36 H 1.08995 * 110.49925 * 160.33012 * 11 9 8 37 37 H 1.09003 * 110.34175 * 37.93228 * 11 9 8 38 38 H 0.97004 * 119.99870 * 5.05282 * 16 15 13 39 39 H 1.08999 * 109.88375 * 120.70726 * 21 12 11 40 40 H 1.09003 * 109.88003 * 241.86849 * 21 12 11 41 41 H 0.96703 * 113.99484 * 61.46350 * 24 22 21 42 42 H 1.09003 * 109.50779 * 62.28475 * 25 5 4 43 43 H 1.09005 * 109.50391 * 182.40610 * 25 5 4 44 44 H 1.09001 * 109.46294 * 294.18210 * 26 2 1 45 45 H 1.09005 * 109.45925 * 54.14736 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5180 1.3343 -0.1468 5 6 4.1188 0.5372 1.0143 6 6 5.6134 0.4466 0.8429 7 8 6.1468 0.9683 -0.1132 8 7 6.3570 -0.2142 1.7521 9 6 7.8099 -0.3018 1.5859 10 1 8.1973 0.5831 1.0809 11 6 8.2114 -1.5931 0.8257 12 7 8.1877 -2.6535 1.8498 13 6 8.0121 -3.9903 1.6105 14 1 7.4710 -4.3155 0.7343 15 6 8.5296 -4.9273 2.4942 16 7 7.8839 -6.0533 2.7122 17 14 10.1426 -4.5903 3.3741 18 1 10.6651 -3.2636 2.9592 19 1 11.1284 -5.6434 3.0212 20 1 9.9164 -4.5958 4.8418 21 6 8.3900 -2.0385 3.1698 22 6 8.5141 -0.5158 2.9518 23 1 9.5613 -0.2177 2.8997 24 8 7.8374 0.1999 3.9871 25 6 3.5183 -0.8713 1.0207 26 6 1.9954 -0.7707 1.1336 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.7324 1.8608 0.9376 31 1 1.5632 1.9258 -0.8329 32 1 3.9098 2.3514 -0.1311 33 1 3.7819 0.8573 -1.0908 34 1 3.8897 1.0361 1.9558 35 1 5.9303 -0.6318 2.5166 36 1 9.2124 -1.4934 0.4061 37 1 7.4890 -1.8097 0.0387 38 1 7.0856 -6.2612 2.2018 39 1 7.5367 -2.2526 3.8132 40 1 9.3038 -2.4239 3.6221 41 1 8.1911 0.0388 4.8725 42 1 3.7814 -1.3835 0.0951 43 1 3.9101 -1.4302 1.8706 44 1 1.7326 -0.2709 2.0659 45 1 1.5636 -1.7716 1.1241 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083749152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:57 Heat of formation + Delta-G solvation = -83.791759 kcal Electronic energy + Delta-G solvation = -25460.823269 eV Core-core repulsion = 21898.559046 eV Total energy + Delta-G solvation = -3562.264223 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.44767 -40.03450 -38.94724 -36.73148 -35.35791 -34.65519 -33.81718 -31.86407 -30.52809 -29.25600 -28.00346 -25.82883 -24.46429 -24.12586 -22.46593 -22.16946 -21.26113 -20.64408 -19.67222 -18.45397 -18.22160 -17.39804 -16.84773 -16.67826 -16.17664 -16.02135 -15.82372 -15.55426 -15.43818 -15.00537 -14.79059 -14.54869 -14.40976 -14.07293 -13.81221 -13.44265 -13.31864 -13.24228 -13.15371 -12.78215 -12.71051 -12.58740 -12.29261 -12.18260 -12.10075 -11.73239 -11.70796 -11.46627 -11.30267 -10.97248 -10.73043 -10.52027 -10.05822 -9.27844 -9.18539 -8.56668 -5.50764 1.43009 1.55147 1.61179 1.72084 2.18577 2.50909 2.91259 2.96923 3.06806 3.44763 3.56691 3.67565 3.71795 3.73533 3.84618 4.12974 4.18682 4.19360 4.31731 4.41697 4.46238 4.48831 4.53163 4.54516 4.69362 4.71061 4.74299 4.84107 4.85850 4.89043 4.92201 5.01727 5.03279 5.05722 5.12538 5.31310 5.52631 5.69733 6.09809 6.12813 6.13558 6.56371 6.79746 6.83837 7.23923 7.45172 8.17080 8.75096 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.018960 B = 0.004246 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.464861 B = 6593.115861 C = 7410.433848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.566 5.566 3 C 0.062 3.938 4 C -0.091 4.091 5 C -0.097 4.097 6 C 0.515 3.485 7 O -0.585 6.585 8 N -0.691 5.691 9 C 0.146 3.854 10 H 0.104 0.896 11 C 0.116 3.884 12 N -0.610 5.610 13 C -0.337 4.337 14 H 0.024 0.976 15 C -0.055 4.055 16 N -0.933 5.933 17 Si 1.096 2.904 18 H -0.253 1.253 19 H -0.299 1.299 20 H -0.279 1.279 21 C 0.088 3.912 22 C 0.104 3.896 23 H 0.102 0.898 24 O -0.558 6.558 25 C -0.103 4.103 26 C 0.063 3.937 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.116 0.884 35 H 0.408 0.592 36 H 0.042 0.958 37 H 0.025 0.975 38 H 0.251 0.749 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.400 0.600 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.051 0.949 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.774 17.263 2.454 19.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.291 5.291 3 C -0.066 4.066 4 C -0.129 4.129 5 C -0.118 4.118 6 C 0.303 3.697 7 O -0.465 6.465 8 N -0.340 5.340 9 C 0.039 3.961 10 H 0.122 0.878 11 C -0.011 4.011 12 N -0.339 5.339 13 C -0.465 4.465 14 H 0.042 0.958 15 C -0.252 4.252 16 N -0.573 5.573 17 Si 0.921 3.079 18 H -0.178 1.178 19 H -0.227 1.227 20 H -0.205 1.205 21 C -0.037 4.037 22 C 0.043 3.957 23 H 0.120 0.880 24 O -0.365 6.365 25 C -0.142 4.142 26 C -0.064 4.064 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.134 0.866 35 H 0.244 0.756 36 H 0.060 0.940 37 H 0.043 0.957 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.251 0.749 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.069 0.931 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.585 16.947 1.963 19.098 hybrid contribution -1.106 -0.396 -0.161 1.185 sum -9.691 16.550 1.802 19.263 Atomic orbital electron populations 1.22378 0.85716 1.02615 1.01402 1.61887 1.09033 1.14325 1.43889 1.22095 0.93794 0.88962 1.01710 1.21344 0.94771 0.99947 0.96885 1.21365 0.89107 0.98810 1.02515 1.21133 0.90424 0.76750 0.81398 1.90637 1.74832 1.49021 1.32026 1.45560 1.06804 1.54540 1.27142 1.22069 0.81282 0.97562 0.95199 0.87789 1.22217 0.98204 0.88236 0.92397 1.44509 1.86183 1.01830 1.01362 1.19550 1.32404 0.81906 1.12664 0.95788 1.27285 1.04431 0.93213 1.00298 1.71043 1.19238 1.30208 1.36800 0.83437 0.73176 0.75884 0.75399 1.17761 1.22741 1.20509 1.22509 0.99195 0.93420 0.88547 1.22936 0.96469 0.89099 0.87176 0.88003 1.86429 1.61637 1.69004 1.19464 1.21507 0.96051 0.94497 1.02112 1.22020 0.93416 0.98964 0.92033 0.90550 0.91127 0.94737 0.93395 0.89327 0.90580 0.92903 0.86599 0.75610 0.94041 0.95674 0.93978 0.94553 0.94670 0.74941 0.93288 0.90918 0.93104 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.59 127.69 1.22 1.62 16 2 N -0.57 -11.52 4.91 -922.60 -4.53 -16.05 16 3 C 0.06 1.14 5.46 86.32 0.47 1.62 16 4 C -0.09 -2.16 4.68 30.64 0.14 -2.01 16 5 C -0.10 -2.39 2.59 -11.46 -0.03 -2.42 16 6 C 0.52 16.65 7.16 87.66 0.63 17.28 16 7 O -0.58 -22.77 15.62 -3.03 -0.05 -22.82 16 8 N -0.69 -22.12 4.72 -435.61 -2.06 -24.18 16 9 C 0.15 4.89 3.31 46.46 0.15 5.04 16 10 H 0.10 3.41 7.54 -2.38 -0.02 3.40 16 11 C 0.12 4.79 6.95 86.93 0.60 5.40 16 12 N -0.61 -28.76 3.05 -691.55 -2.11 -30.87 16 13 C -0.34 -19.29 10.24 84.03 0.86 -18.43 16 14 H 0.02 1.55 8.06 -2.91 -0.02 1.53 16 15 C -0.05 -3.13 5.29 84.86 0.45 -2.69 16 16 N -0.93 -57.88 13.70 21.65 0.30 -57.58 16 17 Si 1.10 50.34 26.22 68.60 1.80 52.13 16 18 H -0.25 -10.35 6.18 99.48 0.61 -9.73 16 19 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 21 C 0.09 3.38 5.80 86.73 0.50 3.88 16 22 C 0.10 3.01 4.12 31.78 0.13 3.14 16 23 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 24 O -0.56 -13.29 12.67 -148.98 -1.89 -15.18 16 25 C -0.10 -2.62 5.26 30.65 0.16 -2.46 16 26 C 0.06 1.30 5.46 86.33 0.47 1.77 16 27 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 1.02 8.09 -2.38 -0.02 1.00 16 29 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.09 1.43 8.12 -2.39 -0.02 1.41 16 32 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.05 1.53 8.04 -2.38 -0.02 1.52 16 34 H 0.12 2.31 8.14 -2.39 -0.02 2.30 16 35 H 0.41 12.45 7.87 -92.70 -0.73 11.72 16 36 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.25 15.80 8.73 -92.71 -0.81 14.99 16 39 H 0.04 1.45 8.06 -2.39 -0.02 1.43 16 40 H 0.04 1.37 3.85 -2.39 -0.01 1.36 16 41 H 0.40 5.97 9.11 -74.06 -0.67 5.29 16 42 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.07 1.87 7.66 -2.38 -0.02 1.85 16 44 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.08 1.62 8.09 -2.38 -0.02 1.60 16 Total: -1.00 -72.87 351.84 -3.31 -76.18 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: -0.55 Total: 26.61 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 5.77 Total: 11.75 kcal Atomic # 7 Polarization: -120.27 SS G_CDS: -8.40 Total: -128.68 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -1.94 Total: -38.00 kcal Atomic # 14 Polarization: 50.34 SS G_CDS: 1.80 Total: 52.13 kcal Total: -72.87 -3.31 -76.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083749152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.607 kcal (2) G-P(sol) polarization free energy of solvation -72.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds