Wall clock time and date at job start Tue Mar 31 2020 03:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48533 * 110.99791 * 2 1 4 4 C 1.54933 * 103.22792 * 200.28105 * 3 2 1 5 5 C 1.54599 * 102.91913 * 37.41878 * 4 3 2 6 6 H 1.09000 * 110.39405 * 97.00228 * 5 4 3 7 7 C 1.53009 * 110.30791 * 219.12577 * 5 4 3 8 8 C 1.50698 * 109.47069 * 182.17098 * 7 5 4 9 9 O 1.21280 * 119.99892 * 359.97438 * 8 7 5 10 10 N 1.34778 * 119.99839 * 180.02562 * 8 7 5 11 11 C 1.46501 * 120.00004 * 179.97438 * 10 8 7 12 12 H 1.09005 * 110.63769 * 36.68108 * 11 10 8 13 13 C 1.54321 * 110.71770 * 273.54490 * 11 10 8 14 14 N 1.47022 * 107.27135 * 263.82478 * 13 11 10 15 15 C 1.36939 * 125.65306 * 181.02049 * 14 13 11 16 16 H 1.07999 * 119.99517 * 19.72145 * 15 14 13 17 17 C 1.38809 * 120.00347 * 199.72503 * 15 14 13 18 18 N 1.31623 * 119.99893 * 28.44314 * 17 15 14 19 19 Si 1.86793 * 119.99903 * 208.45078 * 17 15 14 20 20 H 1.48500 * 109.47294 * 179.97438 * 19 17 15 21 21 H 1.48503 * 109.47335 * 299.99887 * 19 17 15 22 22 H 1.48502 * 109.47227 * 59.99961 * 19 17 15 23 23 C 1.47426 * 108.69976 * 1.29312 * 14 13 11 24 24 C 1.55133 * 104.72214 * 335.54833 * 23 14 13 25 25 H 1.09003 * 111.18837 * 279.19429 * 24 23 14 26 26 O 1.42898 * 110.90344 * 155.28121 * 24 23 14 27 27 C 1.47905 * 110.99460 * 242.60940 * 2 1 3 28 28 H 1.09003 * 109.47214 * 177.39929 * 1 2 3 29 29 H 1.09000 * 109.47274 * 297.39256 * 1 2 3 30 30 H 1.09002 * 109.47749 * 57.38926 * 1 2 3 31 31 H 1.09000 * 110.66997 * 318.71701 * 3 2 1 32 32 H 1.09002 * 110.66482 * 81.68033 * 3 2 1 33 33 H 1.09004 * 110.72705 * 279.06277 * 4 3 2 34 34 H 1.08999 * 110.72798 * 155.77258 * 4 3 2 35 35 H 1.09000 * 109.46733 * 62.16567 * 7 5 4 36 36 H 1.09000 * 109.47069 * 302.17223 * 7 5 4 37 37 H 0.96993 * 120.00016 * 359.97438 * 10 8 7 38 38 H 1.09002 * 109.88310 * 144.41200 * 13 11 10 39 39 H 1.08997 * 110.01418 * 23.31810 * 13 11 10 40 40 H 0.96998 * 120.00170 * 5.66170 * 18 17 15 41 41 H 1.09003 * 110.37279 * 94.48123 * 23 14 13 42 42 H 1.09002 * 110.36673 * 216.80101 * 23 14 13 43 43 H 0.96697 * 114.00436 * 67.97834 * 26 24 23 44 44 H 1.08991 * 109.91950 * 26.49036 * 27 2 1 45 45 H 1.08996 * 109.91581 * 265.19249 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4490 1.2107 -0.5228 5 6 3.2981 0.1055 -1.5932 6 1 3.2140 0.5473 -2.5861 7 6 4.4895 -0.8530 -1.5385 8 6 4.3501 -1.8900 -2.6230 9 8 3.3919 -1.8653 -3.3661 10 7 5.2896 -2.8456 -2.7664 11 6 5.1538 -3.8542 -3.8203 12 1 4.7232 -3.4142 -4.7198 13 6 4.2999 -5.0430 -3.3314 14 7 5.2275 -6.0843 -2.8655 15 6 4.8686 -7.3099 -2.3714 16 1 3.8888 -7.7118 -2.5834 17 6 5.7640 -8.0358 -1.5979 18 7 6.6708 -7.4092 -0.8786 19 14 5.6821 -9.9018 -1.5783 20 1 6.7390 -10.4343 -0.6812 21 1 4.3497 -10.3337 -1.0849 22 1 5.8929 -10.4211 -2.9535 23 6 6.6078 -5.5877 -3.0124 24 6 6.5238 -4.5138 -4.1287 25 1 6.5228 -4.9725 -5.1175 26 8 7.5873 -3.5671 -4.0065 27 6 1.9989 -0.6353 -1.2261 28 1 -0.3634 -1.0266 -0.0466 29 1 -0.3634 0.4728 0.9124 30 1 -0.3635 0.5538 -0.8656 31 1 1.4236 2.0205 -0.6729 32 1 2.0013 1.7987 1.0092 33 1 4.1115 0.8836 0.2786 34 1 3.8122 2.1353 -0.9716 35 1 4.5155 -1.3450 -0.5663 36 1 5.4130 -0.2935 -1.6874 37 1 6.0557 -2.8656 -2.1718 38 1 3.6941 -5.4267 -4.1523 39 1 3.6552 -4.7270 -2.5113 40 1 6.6621 -6.4408 -0.8237 41 1 6.9521 -5.1421 -2.0791 42 1 7.2721 -6.3974 -3.3147 43 1 8.4631 -3.9335 -4.1900 44 1 1.2757 -0.5401 -2.0359 45 1 2.2121 -1.6873 -1.0367 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083953254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:13 Heat of formation + Delta-G solvation = -57.619868 kcal Electronic energy + Delta-G solvation = -25047.758894 eV Core-core repulsion = 21486.629569 eV Total energy + Delta-G solvation = -3561.129325 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.06305 -38.92729 -37.76249 -35.31777 -33.86633 -33.40784 -31.76912 -30.05665 -28.46205 -27.64411 -26.85440 -25.03593 -24.14806 -21.39166 -21.16125 -20.55463 -19.88673 -19.74303 -17.62904 -17.17347 -16.76084 -16.32087 -15.81550 -15.38710 -14.91336 -14.69338 -14.29432 -13.98857 -13.85230 -13.59565 -13.23245 -13.12740 -12.94248 -12.72976 -12.55781 -12.39725 -11.94906 -11.65981 -11.51531 -11.49649 -11.31323 -11.27316 -10.83861 -10.79005 -10.69908 -10.62745 -10.41343 -10.05499 -9.82311 -9.55070 -9.40198 -8.66413 -8.53119 -8.44724 -7.00705 -6.16578 -3.23157 2.92930 3.43499 3.48178 3.50676 3.68876 3.95350 4.27893 4.49459 4.53280 4.57366 4.74530 5.03201 5.06037 5.12916 5.23378 5.27078 5.28785 5.30537 5.36625 5.44728 5.54002 5.57437 5.59850 5.62131 5.67626 5.73773 5.83111 5.88601 5.97778 6.01601 6.10277 6.18903 6.40298 6.59314 6.67059 6.79028 6.82019 6.91511 6.96724 7.72328 7.83775 7.86889 8.42659 8.53779 8.94258 9.74101 10.27716 11.15352 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.017542 B = 0.003712 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.792598 B = 7541.796231 C = 8440.172708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.526 5.526 3 C 0.033 3.967 4 C -0.121 4.121 5 C -0.079 4.079 6 H 0.082 0.918 7 C -0.132 4.132 8 C 0.512 3.488 9 O -0.550 6.550 10 N -0.701 5.701 11 C 0.146 3.854 12 H 0.092 0.908 13 C 0.125 3.875 14 N -0.597 5.597 15 C -0.339 4.339 16 H 0.066 0.934 17 C -0.023 4.023 18 N -0.912 5.912 19 Si 1.065 2.935 20 H -0.285 1.285 21 H -0.292 1.292 22 H -0.293 1.293 23 C 0.119 3.881 24 C 0.074 3.926 25 H 0.075 0.925 26 O -0.562 6.562 27 C 0.049 3.951 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.026 0.974 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.405 0.595 38 H 0.036 0.964 39 H 0.034 0.966 40 H 0.267 0.733 41 H 0.035 0.965 42 H 0.052 0.948 43 H 0.379 0.621 44 H 0.048 0.952 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.977 16.561 -1.519 16.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.250 5.250 3 C -0.095 4.095 4 C -0.159 4.159 5 C -0.099 4.099 6 H 0.100 0.900 7 C -0.172 4.172 8 C 0.299 3.701 9 O -0.428 6.428 10 N -0.352 5.352 11 C 0.040 3.960 12 H 0.110 0.890 13 C -0.001 4.001 14 N -0.325 5.325 15 C -0.467 4.467 16 H 0.083 0.917 17 C -0.225 4.225 18 N -0.553 5.553 19 Si 0.894 3.106 20 H -0.211 1.211 21 H -0.219 1.219 22 H -0.221 1.221 23 C -0.008 4.008 24 C 0.013 3.987 25 H 0.093 0.907 26 O -0.367 6.367 27 C -0.078 4.078 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.239 0.761 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.226 0.774 44 H 0.067 0.933 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.314 15.206 -0.826 15.585 hybrid contribution -0.327 1.264 -1.133 1.729 sum -3.640 16.470 -1.960 16.981 Atomic orbital electron populations 1.22499 0.88065 1.02178 1.00502 1.64780 1.08036 1.14574 1.37641 1.23232 0.95127 0.90248 1.00844 1.22588 0.96699 0.98226 0.98364 1.21732 0.93804 0.94848 0.99476 0.90004 1.21755 1.00093 0.96353 0.98978 1.20614 0.82314 0.81943 0.85259 1.90665 1.31178 1.75017 1.45963 1.45721 1.25755 1.28840 1.34874 1.21945 0.94642 0.88573 0.90799 0.89016 1.21798 0.93053 0.87748 0.97532 1.44389 0.99310 1.13900 1.74940 1.19735 1.03750 0.92486 1.30693 0.91669 1.25802 0.96940 1.06300 0.93494 1.70806 1.39120 1.10968 1.34384 0.83523 0.75828 0.75232 0.75987 1.21057 1.21905 1.22067 1.22194 0.89117 0.94607 0.94862 1.23478 0.86306 0.89787 0.99114 0.90718 1.86378 1.17987 1.38664 1.93669 1.22874 0.95390 0.99494 0.90078 0.91237 0.91479 0.95537 0.93935 0.90155 0.90333 0.90940 0.88437 0.88893 0.76060 0.94584 0.94813 0.92148 0.94732 0.92928 0.77419 0.93324 0.90149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.40 60.06 0.56 0.74 16 2 N -0.53 -6.38 5.55 -238.72 -1.33 -7.71 16 3 C 0.03 0.33 6.56 -1.90 -0.01 0.31 16 4 C -0.12 -1.13 6.61 -24.87 -0.16 -1.29 16 5 C -0.08 -0.93 2.62 -89.26 -0.23 -1.16 16 6 H 0.08 1.01 8.00 -51.93 -0.42 0.60 16 7 C -0.13 -1.58 4.90 -27.88 -0.14 -1.72 16 8 C 0.51 8.17 7.34 -10.99 -0.08 8.09 16 9 O -0.55 -10.33 14.80 5.56 0.08 -10.24 16 10 N -0.70 -11.59 4.78 -52.04 -0.25 -11.84 16 11 C 0.15 2.66 3.14 -66.10 -0.21 2.45 16 12 H 0.09 1.65 7.69 -51.93 -0.40 1.26 16 13 C 0.13 2.73 6.98 -3.07 -0.02 2.71 16 14 N -0.60 -14.92 3.26 -169.93 -0.55 -15.47 16 15 C -0.34 -9.54 10.00 -15.06 -0.15 -9.69 16 16 H 0.07 1.85 7.97 -52.49 -0.42 1.43 16 17 C -0.02 -0.65 5.10 -17.43 -0.09 -0.74 16 18 N -0.91 -26.96 13.01 55.49 0.72 -26.24 16 19 Si 1.06 25.06 30.00 -169.99 -5.10 19.96 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.12 2.59 5.10 -2.41 -0.01 2.58 16 24 C 0.07 1.27 4.23 -24.47 -0.10 1.17 16 25 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 26 O -0.56 -8.26 12.63 -35.23 -0.44 -8.70 16 27 C 0.05 0.66 5.28 -2.75 -0.01 0.65 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.03 0.26 8.00 -51.93 -0.42 -0.16 16 31 H 0.04 0.39 7.96 -51.93 -0.41 -0.02 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.71 7.86 -51.93 -0.41 0.31 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.40 6.37 8.20 -40.82 -0.33 6.03 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.03 0.80 8.05 -51.93 -0.42 0.38 16 40 H 0.27 7.91 6.19 -40.82 -0.25 7.66 16 41 H 0.04 0.81 6.81 -51.93 -0.35 0.46 16 42 H 0.05 1.24 8.08 -51.93 -0.42 0.82 16 43 H 0.38 4.06 9.12 45.56 0.42 4.48 16 44 H 0.05 0.69 7.73 -51.93 -0.40 0.29 16 45 H 0.08 1.26 7.28 -51.93 -0.38 0.88 16 LS Contribution 356.68 15.07 5.38 5.38 Total: -1.00 -32.97 356.68 -8.95 -41.92 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -6.79 Total: 8.87 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -0.66 Total: 4.09 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: -1.41 Total: -61.26 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.36 Total: -18.95 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -5.10 Total: 19.96 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.97 -8.95 -41.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083953254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.700 kcal (2) G-P(sol) polarization free energy of solvation -32.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds