Wall clock time and date at job start Tue Mar 31 2020 03:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48533 * 110.99791 * 2 1 4 4 C 1.54933 * 103.22792 * 200.28105 * 3 2 1 5 5 C 1.54599 * 102.91913 * 37.41878 * 4 3 2 6 6 H 1.09000 * 110.39405 * 97.00228 * 5 4 3 7 7 C 1.53009 * 110.30791 * 219.12577 * 5 4 3 8 8 C 1.50698 * 109.47069 * 182.17098 * 7 5 4 9 9 O 1.21280 * 119.99892 * 359.97438 * 8 7 5 10 10 N 1.34778 * 119.99839 * 180.02562 * 8 7 5 11 11 C 1.46501 * 120.00004 * 179.97438 * 10 8 7 12 12 H 1.09005 * 110.63769 * 36.68108 * 11 10 8 13 13 C 1.54321 * 110.71770 * 273.54490 * 11 10 8 14 14 N 1.47022 * 107.27135 * 263.82478 * 13 11 10 15 15 C 1.36939 * 125.65306 * 181.02049 * 14 13 11 16 16 H 1.07999 * 119.99517 * 19.72145 * 15 14 13 17 17 C 1.38809 * 120.00347 * 199.72503 * 15 14 13 18 18 N 1.31623 * 119.99893 * 28.44314 * 17 15 14 19 19 Si 1.86793 * 119.99903 * 208.45078 * 17 15 14 20 20 H 1.48500 * 109.47294 * 179.97438 * 19 17 15 21 21 H 1.48503 * 109.47335 * 299.99887 * 19 17 15 22 22 H 1.48502 * 109.47227 * 59.99961 * 19 17 15 23 23 C 1.47426 * 108.69976 * 1.29312 * 14 13 11 24 24 C 1.55133 * 104.72214 * 335.54833 * 23 14 13 25 25 H 1.09003 * 111.18837 * 279.19429 * 24 23 14 26 26 O 1.42898 * 110.90344 * 155.28121 * 24 23 14 27 27 C 1.47905 * 110.99460 * 242.60940 * 2 1 3 28 28 H 1.09003 * 109.47214 * 177.39929 * 1 2 3 29 29 H 1.09000 * 109.47274 * 297.39256 * 1 2 3 30 30 H 1.09002 * 109.47749 * 57.38926 * 1 2 3 31 31 H 1.09000 * 110.66997 * 318.71701 * 3 2 1 32 32 H 1.09002 * 110.66482 * 81.68033 * 3 2 1 33 33 H 1.09004 * 110.72705 * 279.06277 * 4 3 2 34 34 H 1.08999 * 110.72798 * 155.77258 * 4 3 2 35 35 H 1.09000 * 109.46733 * 62.16567 * 7 5 4 36 36 H 1.09000 * 109.47069 * 302.17223 * 7 5 4 37 37 H 0.96993 * 120.00016 * 359.97438 * 10 8 7 38 38 H 1.09002 * 109.88310 * 144.41200 * 13 11 10 39 39 H 1.08997 * 110.01418 * 23.31810 * 13 11 10 40 40 H 0.96998 * 120.00170 * 5.66170 * 18 17 15 41 41 H 1.09003 * 110.37279 * 94.48123 * 23 14 13 42 42 H 1.09002 * 110.36673 * 216.80101 * 23 14 13 43 43 H 0.96697 * 114.00436 * 67.97834 * 26 24 23 44 44 H 1.08991 * 109.91950 * 26.49036 * 27 2 1 45 45 H 1.08996 * 109.91581 * 265.19249 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4490 1.2107 -0.5228 5 6 3.2981 0.1055 -1.5932 6 1 3.2140 0.5473 -2.5861 7 6 4.4895 -0.8530 -1.5385 8 6 4.3501 -1.8900 -2.6230 9 8 3.3919 -1.8653 -3.3661 10 7 5.2896 -2.8456 -2.7664 11 6 5.1538 -3.8542 -3.8203 12 1 4.7232 -3.4142 -4.7198 13 6 4.2999 -5.0430 -3.3314 14 7 5.2275 -6.0843 -2.8655 15 6 4.8686 -7.3099 -2.3714 16 1 3.8888 -7.7118 -2.5834 17 6 5.7640 -8.0358 -1.5979 18 7 6.6708 -7.4092 -0.8786 19 14 5.6821 -9.9018 -1.5783 20 1 6.7390 -10.4343 -0.6812 21 1 4.3497 -10.3337 -1.0849 22 1 5.8929 -10.4211 -2.9535 23 6 6.6078 -5.5877 -3.0124 24 6 6.5238 -4.5138 -4.1287 25 1 6.5228 -4.9725 -5.1175 26 8 7.5873 -3.5671 -4.0065 27 6 1.9989 -0.6353 -1.2261 28 1 -0.3634 -1.0266 -0.0466 29 1 -0.3634 0.4728 0.9124 30 1 -0.3635 0.5538 -0.8656 31 1 1.4236 2.0205 -0.6729 32 1 2.0013 1.7987 1.0092 33 1 4.1115 0.8836 0.2786 34 1 3.8122 2.1353 -0.9716 35 1 4.5155 -1.3450 -0.5663 36 1 5.4130 -0.2935 -1.6874 37 1 6.0557 -2.8656 -2.1718 38 1 3.6941 -5.4267 -4.1523 39 1 3.6552 -4.7270 -2.5113 40 1 6.6621 -6.4408 -0.8237 41 1 6.9521 -5.1421 -2.0791 42 1 7.2721 -6.3974 -3.3147 43 1 8.4631 -3.9335 -4.1900 44 1 1.2757 -0.5401 -2.0359 45 1 2.2121 -1.6873 -1.0367 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083953254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:13 Heat of formation + Delta-G solvation = -84.438613 kcal Electronic energy + Delta-G solvation = -25048.921842 eV Core-core repulsion = 21486.629569 eV Total energy + Delta-G solvation = -3562.292273 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.34162 -40.11758 -39.09746 -36.84127 -35.44806 -34.39418 -33.58656 -31.04128 -30.08157 -29.20011 -28.05404 -26.31796 -25.74308 -22.63170 -22.31059 -22.09335 -21.32249 -20.84122 -19.63122 -18.49793 -18.04423 -17.41272 -16.98665 -16.62843 -16.31815 -16.14351 -15.62400 -15.40127 -15.29879 -15.15439 -14.65877 -14.36824 -14.14154 -14.04453 -13.92842 -13.65546 -13.33820 -12.91403 -12.76452 -12.69036 -12.56271 -12.44500 -12.36105 -12.20839 -11.93999 -11.89791 -11.75518 -11.73720 -11.55217 -11.02557 -10.81791 -10.55810 -10.09403 -9.45400 -9.08312 -8.37973 -5.42241 1.57551 1.64149 1.65209 1.84176 2.16225 2.59008 2.93872 3.08028 3.14953 3.49574 3.55446 3.63511 3.65406 3.79573 3.82007 4.00350 4.12715 4.32759 4.36046 4.38272 4.42454 4.45593 4.50326 4.55402 4.62851 4.73876 4.77461 4.81145 4.86670 4.89813 4.91302 4.97262 5.05461 5.07672 5.16684 5.29878 5.48116 5.62296 5.88652 6.04183 6.26149 6.55660 6.75758 6.83251 7.24935 7.62498 8.18869 8.92621 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.017542 B = 0.003712 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.792598 B = 7541.796231 C = 8440.172708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.542 5.542 3 C 0.032 3.968 4 C -0.112 4.112 5 C -0.077 4.077 6 H 0.076 0.924 7 C -0.122 4.122 8 C 0.508 3.492 9 O -0.581 6.581 10 N -0.701 5.701 11 C 0.154 3.846 12 H 0.100 0.900 13 C 0.126 3.874 14 N -0.615 5.615 15 C -0.356 4.356 16 H 0.054 0.946 17 C -0.069 4.069 18 N -0.934 5.934 19 Si 1.116 2.884 20 H -0.288 1.288 21 H -0.279 1.279 22 H -0.278 1.278 23 C 0.124 3.876 24 C 0.101 3.899 25 H 0.093 0.907 26 O -0.556 6.556 27 C 0.052 3.948 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.030 0.970 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.125 0.875 37 H 0.409 0.591 38 H 0.035 0.965 39 H 0.008 0.992 40 H 0.255 0.745 41 H 0.018 0.982 42 H 0.032 0.968 43 H 0.400 0.600 44 H 0.032 0.968 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.114 18.024 -1.719 18.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.267 5.267 3 C -0.096 4.096 4 C -0.150 4.150 5 C -0.097 4.097 6 H 0.094 0.906 7 C -0.162 4.162 8 C 0.296 3.704 9 O -0.461 6.461 10 N -0.352 5.352 11 C 0.048 3.952 12 H 0.118 0.882 13 C 0.000 4.000 14 N -0.344 5.344 15 C -0.484 4.484 16 H 0.072 0.928 17 C -0.266 4.266 18 N -0.576 5.576 19 Si 0.940 3.060 20 H -0.214 1.214 21 H -0.205 1.205 22 H -0.204 1.204 23 C -0.002 4.002 24 C 0.040 3.960 25 H 0.111 0.889 26 O -0.363 6.363 27 C -0.076 4.076 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.143 0.857 37 H 0.245 0.755 38 H 0.053 0.947 39 H 0.026 0.974 40 H 0.066 0.934 41 H 0.036 0.964 42 H 0.050 0.950 43 H 0.250 0.750 44 H 0.050 0.950 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.435 16.704 -1.033 16.912 hybrid contribution -0.650 0.842 -1.052 1.496 sum -3.085 17.547 -2.085 17.937 Atomic orbital electron populations 1.22528 0.87368 1.01837 1.01574 1.64758 1.08946 1.16292 1.36665 1.23343 0.95341 0.88888 1.01980 1.22595 0.96602 0.98131 0.97623 1.21722 0.92535 0.95304 1.00114 0.90558 1.21779 1.01714 0.95440 0.97263 1.21357 0.81347 0.82139 0.85534 1.90650 1.32257 1.75812 1.47397 1.45740 1.26195 1.28554 1.34673 1.21740 0.94569 0.87584 0.91348 0.88220 1.21833 0.93067 0.88694 0.96440 1.44595 1.01233 1.13901 1.74645 1.19967 1.03665 0.94058 1.30753 0.92816 1.27171 0.96442 1.10034 0.92913 1.70918 1.40270 1.10322 1.36058 0.82846 0.76234 0.70309 0.76619 1.21373 1.20453 1.20413 1.22153 0.87033 0.95130 0.95856 1.23081 0.86641 0.88366 0.97884 0.88918 1.86351 1.18743 1.37647 1.93602 1.22728 0.96324 0.98269 0.90265 0.92329 0.89718 0.95111 0.93285 0.88649 0.89688 0.88567 0.88164 0.85736 0.75490 0.94672 0.97431 0.93432 0.96422 0.94999 0.74970 0.94955 0.93332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.40 127.69 1.20 1.52 16 2 N -0.54 -12.81 5.55 -909.17 -5.05 -17.86 16 3 C 0.03 0.55 6.56 86.65 0.57 1.12 16 4 C -0.11 -1.77 6.61 31.80 0.21 -1.56 16 5 C -0.08 -1.71 2.62 -9.91 -0.03 -1.74 16 6 H 0.08 1.79 8.00 -2.39 -0.02 1.77 16 7 C -0.12 -2.76 4.90 29.85 0.15 -2.61 16 8 C 0.51 16.00 7.34 87.66 0.64 16.64 16 9 O -0.58 -22.04 14.80 -3.03 -0.04 -22.08 16 10 N -0.70 -22.75 4.78 -436.93 -2.09 -24.84 16 11 C 0.15 5.52 3.14 46.18 0.14 5.67 16 12 H 0.10 3.49 7.69 -2.38 -0.02 3.47 16 13 C 0.13 5.63 6.98 86.73 0.61 6.23 16 14 N -0.62 -31.42 3.26 -691.54 -2.26 -33.68 16 15 C -0.36 -20.48 10.00 84.03 0.84 -19.64 16 16 H 0.05 3.13 7.97 -2.91 -0.02 3.11 16 17 C -0.07 -3.90 5.10 84.86 0.43 -3.47 16 18 N -0.93 -56.10 13.01 21.65 0.28 -55.82 16 19 Si 1.12 50.70 30.00 68.60 2.06 52.76 16 20 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 21 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 22 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 23 C 0.12 5.47 5.10 86.93 0.44 5.92 16 24 C 0.10 3.34 4.23 32.06 0.14 3.48 16 25 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 26 O -0.56 -14.88 12.63 -148.98 -1.88 -16.76 16 27 C 0.05 1.43 5.28 86.45 0.46 1.89 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.03 0.59 8.00 -2.39 -0.02 0.57 16 31 H 0.05 0.79 7.96 -2.39 -0.02 0.78 16 32 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 1.27 7.86 -2.39 -0.02 1.25 16 34 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.41 12.49 8.20 -92.71 -0.76 11.73 16 38 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.01 0.38 8.05 -2.39 -0.02 0.36 16 40 H 0.26 15.54 6.19 -92.71 -0.57 14.97 16 41 H 0.02 0.85 6.81 -2.39 -0.02 0.84 16 42 H 0.03 1.52 8.08 -2.39 -0.02 1.50 16 43 H 0.40 7.36 9.12 -74.06 -0.68 6.69 16 44 H 0.03 0.96 7.73 -2.39 -0.02 0.94 16 45 H 0.05 1.61 7.28 -2.39 -0.02 1.59 16 Total: -1.00 -72.93 356.68 -3.43 -76.36 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: -0.25 Total: 28.47 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 5.80 Total: 13.44 kcal Atomic # 7 Polarization: -123.08 SS G_CDS: -9.11 Total: -132.19 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -1.93 Total: -38.84 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 2.06 Total: 52.76 kcal Total: -72.93 -3.43 -76.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083953254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.074 kcal (2) G-P(sol) polarization free energy of solvation -72.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds