Wall clock time and date at job start Tue Mar 31 2020 03:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47849 * 110.99814 * 2 1 4 4 C 1.54909 * 104.79381 * 146.36588 * 3 2 1 5 5 C 1.55139 * 101.65157 * 322.93075 * 4 3 2 6 6 H 1.08999 * 110.85639 * 277.19905 * 5 4 3 7 7 C 1.53001 * 110.70556 * 154.04003 * 5 4 3 8 8 C 1.50698 * 109.47252 * 179.97438 * 7 5 4 9 9 O 1.21282 * 119.99850 * 359.97438 * 8 7 5 10 10 N 1.34778 * 120.00143 * 180.02562 * 8 7 5 11 11 C 1.46500 * 120.00018 * 179.97438 * 10 8 7 12 12 H 1.08996 * 110.64165 * 31.85207 * 11 10 8 13 13 C 1.54320 * 110.87143 * 268.60526 * 11 10 8 14 14 N 1.47021 * 107.27329 * 219.37304 * 13 11 10 15 15 C 1.36937 * 125.65228 * 178.99002 * 14 13 11 16 16 H 1.08006 * 119.99613 * 349.93741 * 15 14 13 17 17 C 1.38804 * 120.00391 * 169.94591 * 15 14 13 18 18 N 1.31624 * 120.00023 * 350.41582 * 17 15 14 19 19 Si 1.86796 * 120.00327 * 170.41940 * 17 15 14 20 20 H 1.48502 * 109.47437 * 94.13633 * 19 17 15 21 21 H 1.48507 * 109.47291 * 214.14010 * 19 17 15 22 22 H 1.48503 * 109.47103 * 334.13586 * 19 17 15 23 23 C 1.47423 * 108.70154 * 358.94067 * 14 13 11 24 24 C 1.54915 * 104.83394 * 24.13080 * 23 14 13 25 25 H 1.08995 * 111.00201 * 204.92047 * 24 23 14 26 26 O 1.42898 * 111.00623 * 81.06056 * 24 23 14 27 27 C 1.47435 * 111.00173 * 120.84240 * 2 1 3 28 28 H 1.09007 * 109.46750 * 299.15609 * 1 2 3 29 29 H 1.09000 * 109.47380 * 59.15212 * 1 2 3 30 30 H 1.08997 * 109.47398 * 179.15707 * 1 2 3 31 31 H 1.09000 * 110.37504 * 265.19150 * 3 2 1 32 32 H 1.09001 * 110.37425 * 27.42725 * 3 2 1 33 33 H 1.09006 * 110.99228 * 204.83960 * 4 3 2 34 34 H 1.08998 * 110.99270 * 81.01928 * 4 3 2 35 35 H 1.09003 * 109.47443 * 59.94344 * 7 5 4 36 36 H 1.09007 * 109.46971 * 299.94315 * 7 5 4 37 37 H 0.97000 * 119.99709 * 359.97438 * 10 8 7 38 38 H 1.08998 * 109.88752 * 338.79337 * 13 11 10 39 39 H 1.09004 * 109.88434 * 99.95441 * 13 11 10 40 40 H 0.96994 * 120.00230 * 180.02562 * 18 17 15 41 41 H 1.09002 * 110.36894 * 265.29064 * 23 14 13 42 42 H 1.09000 * 110.36608 * 142.96525 * 23 14 13 43 43 H 0.96696 * 113.99545 * 67.80452 * 26 24 23 44 44 H 1.08999 * 109.88739 * 117.33708 * 27 2 1 45 45 H 1.09001 * 109.88988 * 356.15302 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3047 1.3027 0.8296 5 6 2.9158 0.2821 1.9314 6 1 2.3753 0.7723 2.7411 7 6 4.1570 -0.4338 2.4679 8 6 3.7482 -1.4164 3.5349 9 8 2.5793 -1.5322 3.8369 10 7 4.6817 -2.1656 4.1544 11 6 4.2843 -3.1204 5.1921 12 1 3.2930 -3.5230 4.9845 13 6 4.3256 -2.4639 6.5881 14 7 4.8603 -3.4631 7.5247 15 6 5.0741 -3.2684 8.8632 16 1 5.0012 -2.2759 9.2829 17 6 5.3846 -4.3465 9.6805 18 7 5.2898 -5.5740 9.2151 19 14 5.9372 -4.0553 11.4410 20 1 4.7642 -4.1370 12.3480 21 1 6.9326 -5.0885 11.8247 22 1 6.5543 -2.7090 11.5498 23 6 5.1270 -4.7098 6.7845 24 6 5.3265 -4.2633 5.3145 25 1 5.0980 -5.0759 4.6250 26 8 6.6519 -3.7726 5.1036 27 6 1.9974 -0.7057 1.1818 28 1 -0.3633 0.5007 0.8975 29 1 -0.3634 0.5269 -0.8823 30 1 -0.3634 -1.0275 -0.0151 31 1 2.2147 1.7039 -1.0182 32 1 1.2880 2.0596 0.4707 33 1 3.5495 2.2720 1.2640 34 1 4.1302 0.9282 0.2243 35 1 4.8442 0.2985 2.8918 36 1 4.6497 -0.9660 1.6541 37 1 5.6166 -2.0727 3.9132 38 1 4.9761 -1.5896 6.5676 39 1 3.3197 -2.1730 6.8909 40 1 5.5064 -6.3274 9.7863 41 1 4.2766 -5.3871 6.8631 42 1 6.0307 -5.1888 7.1613 43 1 7.3377 -4.4511 5.1704 44 1 2.5697 -1.5784 0.8673 45 1 1.1755 -1.0120 1.8289 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083953255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:15 Heat of formation + Delta-G solvation = -53.926795 kcal Electronic energy + Delta-G solvation = -24695.762437 eV Core-core repulsion = 21134.793256 eV Total energy + Delta-G solvation = -3560.969181 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.05860 -38.89347 -37.73457 -34.77150 -33.92513 -33.43541 -31.69058 -30.15318 -28.63372 -27.61167 -26.72575 -25.15356 -24.21082 -21.24475 -21.14662 -20.60958 -19.95718 -19.69832 -17.45143 -16.79393 -16.70383 -16.29675 -15.68779 -15.20005 -14.97708 -14.81862 -14.25010 -14.03128 -14.00049 -13.54521 -13.24297 -13.04095 -12.87477 -12.77049 -12.54598 -12.04320 -11.82751 -11.74083 -11.52030 -11.40844 -11.30258 -11.02776 -10.91833 -10.83880 -10.81115 -10.61825 -10.44049 -10.12329 -9.84955 -9.60440 -9.26815 -8.70293 -8.61848 -8.49129 -6.82275 -5.78431 -3.09938 2.84946 3.36584 3.39050 3.44228 3.46927 3.86328 4.36914 4.45976 4.50178 4.58847 4.70368 4.97618 5.07115 5.16656 5.25533 5.27099 5.31906 5.34888 5.37375 5.45660 5.48859 5.55793 5.58213 5.68341 5.69532 5.73323 5.86725 5.91315 5.97500 6.05089 6.17659 6.25097 6.56284 6.70977 6.77844 6.88370 6.95275 7.26985 7.40146 7.70091 7.84064 8.06909 8.22791 8.49614 9.15279 9.77185 10.43381 11.35125 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.031896 B = 0.002879 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.642669 B = 9722.762620 C = 9874.726283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.539 5.539 3 C 0.041 3.959 4 C -0.127 4.127 5 C -0.091 4.091 6 H 0.083 0.917 7 C -0.130 4.130 8 C 0.507 3.493 9 O -0.545 6.545 10 N -0.709 5.709 11 C 0.143 3.857 12 H 0.101 0.899 13 C 0.132 3.868 14 N -0.596 5.596 15 C -0.223 4.223 16 H 0.076 0.924 17 C -0.009 4.009 18 N -0.923 5.923 19 Si 0.912 3.088 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.149 3.851 24 C 0.066 3.934 25 H 0.060 0.940 26 O -0.561 6.561 27 C 0.051 3.949 28 H 0.027 0.973 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.407 0.593 38 H 0.028 0.972 39 H 0.027 0.973 40 H 0.253 0.747 41 H 0.036 0.964 42 H 0.077 0.923 43 H 0.378 0.622 44 H 0.074 0.926 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.678 9.526 -18.932 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.263 5.263 3 C -0.087 4.087 4 C -0.165 4.165 5 C -0.111 4.111 6 H 0.102 0.898 7 C -0.170 4.170 8 C 0.294 3.706 9 O -0.423 6.423 10 N -0.360 5.360 11 C 0.037 3.963 12 H 0.119 0.881 13 C 0.005 3.995 14 N -0.322 5.322 15 C -0.352 4.352 16 H 0.094 0.906 17 C -0.205 4.205 18 N -0.570 5.570 19 Si 0.743 3.257 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.023 3.977 24 C 0.005 3.995 25 H 0.078 0.922 26 O -0.367 6.367 27 C -0.076 4.076 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.243 0.757 38 H 0.046 0.954 39 H 0.045 0.955 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.095 0.905 43 H 0.226 0.774 44 H 0.092 0.908 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.650 9.617 -19.056 21.509 hybrid contribution 0.676 -0.076 1.778 1.904 sum -1.975 9.541 -17.278 19.836 Atomic orbital electron populations 1.22527 0.87833 1.02140 1.00356 1.63595 1.07938 1.14143 1.40608 1.23039 0.95613 0.89764 1.00281 1.22798 0.97790 0.99218 0.96651 1.22117 0.95453 0.95978 0.97564 0.89839 1.21672 0.99190 0.98166 0.97983 1.20672 0.86029 0.81435 0.82506 1.90687 1.18212 1.67811 1.65566 1.45863 1.10856 1.40507 1.38803 1.22096 0.97656 0.88547 0.87964 0.88071 1.21591 0.96729 0.93103 0.88117 1.44266 1.74346 1.09135 1.04457 1.19030 1.40657 0.93530 0.81946 0.90614 1.24799 1.02340 0.95106 0.98240 1.69919 1.54230 0.97135 1.35746 0.86096 0.78182 0.77171 0.84282 1.21595 1.21608 1.20611 1.22063 1.01213 0.89158 0.85265 1.23610 0.82318 0.94373 0.99180 0.92247 1.86245 1.15933 1.40135 1.94407 1.22868 0.98626 0.96667 0.89453 0.95407 0.91669 0.91355 0.90368 0.93636 0.90696 0.90388 0.88732 0.88728 0.75744 0.95361 0.95510 0.93696 0.94580 0.90495 0.77444 0.90816 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.12 60.06 0.55 0.74 16 2 N -0.54 -5.72 5.44 -239.52 -1.30 -7.02 16 3 C 0.04 0.36 6.73 -2.29 -0.02 0.34 16 4 C -0.13 -1.03 6.52 -24.59 -0.16 -1.19 16 5 C -0.09 -0.96 2.55 -88.80 -0.23 -1.18 16 6 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 7 C -0.13 -1.32 5.09 -27.88 -0.14 -1.46 16 8 C 0.51 7.37 7.62 -10.99 -0.08 7.29 16 9 O -0.55 -9.85 14.50 5.56 0.08 -9.77 16 10 N -0.71 -10.63 5.08 -52.03 -0.26 -10.89 16 11 C 0.14 2.62 3.20 -66.10 -0.21 2.41 16 12 H 0.10 1.94 7.55 -51.93 -0.39 1.55 16 13 C 0.13 2.93 7.00 -3.07 -0.02 2.91 16 14 N -0.60 -15.37 3.39 -170.07 -0.58 -15.95 16 15 C -0.22 -6.31 10.24 -15.06 -0.15 -6.47 16 16 H 0.08 2.10 7.85 -52.48 -0.41 1.69 16 17 C -0.01 -0.25 5.40 -17.43 -0.09 -0.34 16 18 N -0.92 -26.72 10.68 55.49 0.59 -26.13 16 19 Si 0.91 22.12 29.56 -169.99 -5.03 17.10 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C 0.15 3.46 5.16 -2.53 -0.01 3.45 16 24 C 0.07 1.17 4.28 -24.58 -0.11 1.06 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 26 O -0.56 -9.11 12.24 -35.23 -0.43 -9.54 16 27 C 0.05 0.60 5.49 -2.84 -0.02 0.58 16 28 H 0.03 0.26 8.10 -51.93 -0.42 -0.16 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.39 7.78 -51.93 -0.40 -0.02 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.59 8.05 -51.93 -0.42 0.17 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.09 0.80 8.06 -51.92 -0.42 0.38 16 37 H 0.41 5.44 7.60 -40.82 -0.31 5.13 16 38 H 0.03 0.64 8.03 -51.93 -0.42 0.22 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 42 H 0.08 1.95 6.94 -51.93 -0.36 1.59 16 43 H 0.38 4.83 9.12 45.56 0.42 5.25 16 44 H 0.07 0.89 7.77 -51.93 -0.40 0.49 16 45 H 0.07 0.91 7.11 -51.93 -0.37 0.54 16 LS Contribution 355.98 15.07 5.36 5.36 Total: -1.00 -32.75 355.98 -9.10 -41.85 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -6.84 Total: 6.87 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -0.70 Total: 8.13 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -1.55 Total: -60.00 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.35 Total: -19.31 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.75 -9.10 -41.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083953255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.081 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds