Wall clock time and date at job start Tue Mar 31 2020 03:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47849 * 110.99814 * 2 1 4 4 C 1.54909 * 104.79381 * 146.36588 * 3 2 1 5 5 C 1.55139 * 101.65157 * 322.93075 * 4 3 2 6 6 H 1.08999 * 110.85639 * 277.19905 * 5 4 3 7 7 C 1.53001 * 110.70556 * 154.04003 * 5 4 3 8 8 C 1.50698 * 109.47252 * 179.97438 * 7 5 4 9 9 O 1.21282 * 119.99850 * 359.97438 * 8 7 5 10 10 N 1.34778 * 120.00143 * 180.02562 * 8 7 5 11 11 C 1.46500 * 120.00018 * 179.97438 * 10 8 7 12 12 H 1.08996 * 110.64165 * 31.85207 * 11 10 8 13 13 C 1.54320 * 110.87143 * 268.60526 * 11 10 8 14 14 N 1.47021 * 107.27329 * 219.37304 * 13 11 10 15 15 C 1.36937 * 125.65228 * 178.99002 * 14 13 11 16 16 H 1.08006 * 119.99613 * 349.93741 * 15 14 13 17 17 C 1.38804 * 120.00391 * 169.94591 * 15 14 13 18 18 N 1.31624 * 120.00023 * 350.41582 * 17 15 14 19 19 Si 1.86796 * 120.00327 * 170.41940 * 17 15 14 20 20 H 1.48502 * 109.47437 * 94.13633 * 19 17 15 21 21 H 1.48507 * 109.47291 * 214.14010 * 19 17 15 22 22 H 1.48503 * 109.47103 * 334.13586 * 19 17 15 23 23 C 1.47423 * 108.70154 * 358.94067 * 14 13 11 24 24 C 1.54915 * 104.83394 * 24.13080 * 23 14 13 25 25 H 1.08995 * 111.00201 * 204.92047 * 24 23 14 26 26 O 1.42898 * 111.00623 * 81.06056 * 24 23 14 27 27 C 1.47435 * 111.00173 * 120.84240 * 2 1 3 28 28 H 1.09007 * 109.46750 * 299.15609 * 1 2 3 29 29 H 1.09000 * 109.47380 * 59.15212 * 1 2 3 30 30 H 1.08997 * 109.47398 * 179.15707 * 1 2 3 31 31 H 1.09000 * 110.37504 * 265.19150 * 3 2 1 32 32 H 1.09001 * 110.37425 * 27.42725 * 3 2 1 33 33 H 1.09006 * 110.99228 * 204.83960 * 4 3 2 34 34 H 1.08998 * 110.99270 * 81.01928 * 4 3 2 35 35 H 1.09003 * 109.47443 * 59.94344 * 7 5 4 36 36 H 1.09007 * 109.46971 * 299.94315 * 7 5 4 37 37 H 0.97000 * 119.99709 * 359.97438 * 10 8 7 38 38 H 1.08998 * 109.88752 * 338.79337 * 13 11 10 39 39 H 1.09004 * 109.88434 * 99.95441 * 13 11 10 40 40 H 0.96994 * 120.00230 * 180.02562 * 18 17 15 41 41 H 1.09002 * 110.36894 * 265.29064 * 23 14 13 42 42 H 1.09000 * 110.36608 * 142.96525 * 23 14 13 43 43 H 0.96696 * 113.99545 * 67.80452 * 26 24 23 44 44 H 1.08999 * 109.88739 * 117.33708 * 27 2 1 45 45 H 1.09001 * 109.88988 * 356.15302 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3047 1.3027 0.8296 5 6 2.9158 0.2821 1.9314 6 1 2.3753 0.7723 2.7411 7 6 4.1570 -0.4338 2.4679 8 6 3.7482 -1.4164 3.5349 9 8 2.5793 -1.5322 3.8369 10 7 4.6817 -2.1656 4.1544 11 6 4.2843 -3.1204 5.1921 12 1 3.2930 -3.5230 4.9845 13 6 4.3256 -2.4639 6.5881 14 7 4.8603 -3.4631 7.5247 15 6 5.0741 -3.2684 8.8632 16 1 5.0012 -2.2759 9.2829 17 6 5.3846 -4.3465 9.6805 18 7 5.2898 -5.5740 9.2151 19 14 5.9372 -4.0553 11.4410 20 1 4.7642 -4.1370 12.3480 21 1 6.9326 -5.0885 11.8247 22 1 6.5543 -2.7090 11.5498 23 6 5.1270 -4.7098 6.7845 24 6 5.3265 -4.2633 5.3145 25 1 5.0980 -5.0759 4.6250 26 8 6.6519 -3.7726 5.1036 27 6 1.9974 -0.7057 1.1818 28 1 -0.3633 0.5007 0.8975 29 1 -0.3634 0.5269 -0.8823 30 1 -0.3634 -1.0275 -0.0151 31 1 2.2147 1.7039 -1.0182 32 1 1.2880 2.0596 0.4707 33 1 3.5495 2.2720 1.2640 34 1 4.1302 0.9282 0.2243 35 1 4.8442 0.2985 2.8918 36 1 4.6497 -0.9660 1.6541 37 1 5.6166 -2.0727 3.9132 38 1 4.9761 -1.5896 6.5676 39 1 3.3197 -2.1730 6.8909 40 1 5.5064 -6.3274 9.7863 41 1 4.2766 -5.3871 6.8631 42 1 6.0307 -5.1888 7.1613 43 1 7.3377 -4.4511 5.1704 44 1 2.5697 -1.5784 0.8673 45 1 1.1755 -1.0120 1.8289 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083953255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:15 Heat of formation + Delta-G solvation = -80.725404 kcal Electronic energy + Delta-G solvation = -24696.924512 eV Core-core repulsion = 21134.793256 eV Total energy + Delta-G solvation = -3562.131256 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.21307 -40.00876 -39.07883 -36.38347 -35.40139 -34.30791 -33.55728 -31.04721 -30.25522 -29.01245 -27.98580 -26.48583 -25.62509 -22.57010 -22.12631 -21.95264 -21.35079 -20.82637 -19.19795 -18.25046 -17.93608 -17.23093 -16.96232 -16.74439 -16.28543 -16.02095 -15.78704 -15.41450 -14.98147 -14.69492 -14.63026 -14.37966 -14.20124 -13.97132 -13.69123 -13.57986 -13.18220 -12.91372 -12.75950 -12.70626 -12.52140 -12.29472 -12.26555 -12.15348 -12.11848 -11.95006 -11.87971 -11.71190 -11.57418 -10.91100 -10.78713 -10.70880 -10.03952 -9.30391 -8.89952 -7.92517 -5.27227 1.44740 1.45603 1.55716 1.69586 2.17090 2.48112 3.10417 3.19431 3.28131 3.53973 3.65206 3.72493 3.81938 3.88736 3.95141 4.05403 4.29747 4.37750 4.41745 4.46049 4.48113 4.55953 4.56941 4.69865 4.71234 4.83731 4.84513 4.88434 4.95087 4.98039 5.04546 5.14263 5.18531 5.36164 5.37510 5.39042 5.53933 5.59756 5.99237 6.10615 6.14437 6.66932 6.89305 7.04417 7.34440 7.69308 8.34912 9.18924 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.031896 B = 0.002879 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.642669 B = 9722.762620 C = 9874.726283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.548 5.548 3 C 0.036 3.964 4 C -0.116 4.116 5 C -0.092 4.092 6 H 0.062 0.938 7 C -0.118 4.118 8 C 0.504 3.496 9 O -0.585 6.585 10 N -0.700 5.700 11 C 0.155 3.845 12 H 0.092 0.908 13 C 0.132 3.868 14 N -0.615 5.615 15 C -0.247 4.247 16 H 0.072 0.928 17 C -0.058 4.058 18 N -0.946 5.946 19 Si 0.979 3.021 20 H -0.288 1.288 21 H -0.287 1.287 22 H -0.271 1.271 23 C 0.151 3.849 24 C 0.092 3.908 25 H 0.094 0.906 26 O -0.560 6.560 27 C 0.054 3.946 28 H 0.020 0.980 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.419 0.581 38 H 0.027 0.973 39 H 0.004 0.996 40 H 0.251 0.749 41 H 0.008 0.992 42 H 0.052 0.948 43 H 0.396 0.604 44 H 0.069 0.931 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.080 10.778 -20.683 23.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.272 5.272 3 C -0.091 4.091 4 C -0.153 4.153 5 C -0.112 4.112 6 H 0.080 0.920 7 C -0.158 4.158 8 C 0.293 3.707 9 O -0.465 6.465 10 N -0.352 5.352 11 C 0.048 3.952 12 H 0.110 0.890 13 C 0.005 3.995 14 N -0.342 5.342 15 C -0.376 4.376 16 H 0.090 0.910 17 C -0.252 4.252 18 N -0.594 5.594 19 Si 0.807 3.193 20 H -0.215 1.215 21 H -0.213 1.213 22 H -0.196 1.196 23 C 0.025 3.975 24 C 0.031 3.969 25 H 0.112 0.888 26 O -0.368 6.368 27 C -0.074 4.074 28 H 0.039 0.961 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.257 0.743 38 H 0.045 0.955 39 H 0.022 0.978 40 H 0.060 0.940 41 H 0.026 0.974 42 H 0.071 0.929 43 H 0.246 0.754 44 H 0.087 0.913 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.020 10.888 -20.845 23.539 hybrid contribution 0.121 -0.447 2.321 2.367 sum -0.899 10.441 -18.524 21.282 Atomic orbital electron populations 1.22548 0.87469 1.02080 1.00795 1.63634 1.08455 1.15343 1.39781 1.23159 0.95928 0.88660 1.01336 1.22787 0.97783 0.99193 0.95572 1.22085 0.95240 0.96260 0.97592 0.91976 1.21705 0.99435 0.97529 0.97111 1.21529 0.85230 0.81297 0.82693 1.90686 1.20057 1.68894 1.66844 1.45741 1.11679 1.39979 1.37793 1.21703 0.97676 0.89115 0.86733 0.89029 1.21647 0.95068 0.92793 0.89982 1.44554 1.74572 1.10592 1.04475 1.19338 1.41029 0.93627 0.83601 0.91036 1.25610 1.02507 0.94880 1.02184 1.70101 1.54721 0.97658 1.36919 0.85074 0.77550 0.77354 0.79353 1.21468 1.21310 1.19638 1.21973 0.98827 0.87975 0.88734 1.23252 0.83142 0.94696 0.95810 0.88835 1.86208 1.15580 1.41116 1.93937 1.22771 0.97934 0.97145 0.89562 0.96110 0.89976 0.91816 0.88889 0.93678 0.89069 0.88921 0.86229 0.86004 0.74343 0.95521 0.97753 0.93995 0.97429 0.92921 0.75352 0.91270 0.94450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.12 127.69 1.16 1.52 16 2 N -0.55 -10.97 5.44 -911.71 -4.96 -15.93 16 3 C 0.04 0.55 6.73 86.77 0.58 1.14 16 4 C -0.12 -1.53 6.52 31.98 0.21 -1.32 16 5 C -0.09 -1.78 2.55 -9.61 -0.02 -1.80 16 6 H 0.06 1.47 8.04 -2.39 -0.02 1.45 16 7 C -0.12 -2.06 5.09 29.85 0.15 -1.91 16 8 C 0.50 13.99 7.62 87.66 0.67 14.66 16 9 O -0.58 -21.36 14.50 -3.04 -0.04 -21.40 16 10 N -0.70 -19.74 5.08 -436.92 -2.22 -21.96 16 11 C 0.15 5.60 3.20 46.18 0.15 5.75 16 12 H 0.09 3.54 7.55 -2.39 -0.02 3.52 16 13 C 0.13 5.98 7.00 86.73 0.61 6.59 16 14 N -0.62 -32.52 3.39 -691.99 -2.35 -34.87 16 15 C -0.25 -14.26 10.24 84.03 0.86 -13.40 16 16 H 0.07 4.06 7.85 -2.91 -0.02 4.04 16 17 C -0.06 -3.32 5.40 84.86 0.46 -2.86 16 18 N -0.95 -55.89 10.68 21.65 0.23 -55.66 16 19 Si 0.98 45.87 29.56 68.60 2.03 47.89 16 20 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 21 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 23 C 0.15 7.13 5.16 86.86 0.45 7.58 16 24 C 0.09 3.14 4.28 31.99 0.14 3.28 16 25 H 0.09 2.66 8.14 -2.39 -0.02 2.65 16 26 O -0.56 -16.81 12.24 -148.98 -1.82 -18.63 16 27 C 0.05 1.23 5.49 86.65 0.48 1.71 16 28 H 0.02 0.40 8.10 -2.38 -0.02 0.38 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.04 0.69 7.78 -2.39 -0.02 0.67 16 33 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.09 1.00 8.05 -2.39 -0.02 0.98 16 35 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.12 1.55 8.06 -2.38 -0.02 1.53 16 37 H 0.42 9.94 7.60 -92.71 -0.70 9.24 16 38 H 0.03 1.21 8.03 -2.39 -0.02 1.19 16 39 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 41 H 0.01 0.41 8.07 -2.39 -0.02 0.39 16 42 H 0.05 2.72 6.94 -2.39 -0.02 2.70 16 43 H 0.40 9.05 9.12 -74.06 -0.68 8.38 16 44 H 0.07 1.61 7.77 -2.39 -0.02 1.59 16 45 H 0.04 1.06 7.11 -2.39 -0.02 1.04 16 Total: -1.00 -73.21 355.98 -3.65 -76.86 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -0.39 Total: 22.77 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: 5.88 Total: 20.93 kcal Atomic # 7 Polarization: -119.12 SS G_CDS: -9.30 Total: -128.43 kcal Atomic # 8 Polarization: -38.17 SS G_CDS: -1.87 Total: -40.03 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Total: -73.21 -3.65 -76.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083953255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.864 kcal (2) G-P(sol) polarization free energy of solvation -73.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds