Wall clock time and date at job start Tue Mar 31 2020 04:00:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46495 * 1
3 3 C 1.46497 * 120.00218 * 2 1
4 4 C 1.53003 * 109.46836 * 90.57420 * 3 2 1
5 5 H 1.09006 * 112.74006 * 313.68769 * 4 3 2
6 6 C 1.53498 * 113.46784 * 84.50715 * 4 3 2
7 7 C 1.53502 * 83.34554 * 140.84590 * 6 4 3
8 8 N 1.47069 * 87.98395 * 333.93313 * 7 6 4
9 9 C 1.36933 * 136.05487 * 207.14721 * 8 7 6
10 10 H 1.08002 * 119.99880 * 161.36773 * 9 8 7
11 11 C 1.38810 * 120.00124 * 341.37341 * 9 8 7
12 12 N 1.31624 * 119.99581 * 167.94444 * 11 9 8
13 13 Si 1.86795 * 120.00318 * 347.94481 * 11 9 8
14 14 H 1.48499 * 109.47108 * 85.73667 * 13 11 9
15 15 H 1.48494 * 109.47349 * 205.74112 * 13 11 9
16 16 H 1.48500 * 109.46859 * 325.74135 * 13 11 9
17 17 C 1.34779 * 120.00371 * 180.02562 * 2 1 3
18 18 O 1.21283 * 120.00428 * 179.97438 * 17 2 1
19 19 C 1.50702 * 119.99807 * 359.97438 * 17 2 1
20 20 H 1.09003 * 109.50639 * 31.90121 * 19 17 2
21 21 C 1.53104 * 109.50653 * 271.81952 * 19 17 2
22 22 O 1.43011 * 109.25782 * 183.21941 * 21 19 17
23 23 C 1.43017 * 113.74404 * 58.66492 * 22 21 19
24 24 C 1.53099 * 109.25587 * 301.33011 * 23 22 21
25 25 N 1.47013 * 109.50874 * 151.98830 * 19 17 2
26 26 C 1.46900 * 111.00151 * 302.32947 * 25 19 17
27 27 H 1.09005 * 109.47049 * 264.94043 * 1 2 3
28 28 H 1.08994 * 109.47222 * 24.94004 * 1 2 3
29 29 H 1.09008 * 109.47156 * 144.94353 * 1 2 3
30 30 H 1.08999 * 109.47702 * 210.57429 * 3 2 1
31 31 H 1.09005 * 109.47185 * 330.58144 * 3 2 1
32 32 H 1.09000 * 114.21023 * 254.43766 * 6 4 3
33 33 H 1.09003 * 114.20438 * 27.26287 * 6 4 3
34 34 H 1.08993 * 113.46679 * 219.15126 * 7 6 4
35 35 H 1.09001 * 113.51774 * 88.72390 * 7 6 4
36 36 H 0.97005 * 119.99413 * 179.97438 * 12 11 9
37 37 H 1.09002 * 109.49923 * 303.14914 * 21 19 17
38 38 H 1.08995 * 109.50636 * 63.27888 * 21 19 17
39 39 H 1.08999 * 109.50076 * 61.26291 * 23 22 21
40 40 H 1.09003 * 109.50390 * 181.39571 * 23 22 21
41 41 H 1.09004 * 109.50208 * 176.77845 * 24 23 22
42 42 H 1.08999 * 109.50561 * 296.86883 * 24 23 22
43 43 H 1.09001 * 109.47005 * 56.41361 * 26 25 19
44 44 H 1.08992 * 109.46824 * 176.41713 * 26 25 19
45 45 H 1.09001 * 109.46638 * 296.41542 * 26 25 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4650 1.7030 1.4425
5 1 1.5838 1.6180 2.0784
6 6 3.7224 1.0655 2.0497
7 6 3.9104 2.4565 2.6711
8 7 3.1387 3.0062 1.5463
9 6 3.0757 4.2042 0.8859
10 1 2.6335 4.2557 -0.0981
11 6 3.5803 5.3522 1.4811
12 7 3.7391 6.4474 0.7686
13 14 4.0339 5.3428 3.2931
14 1 5.4220 4.8400 3.4533
15 1 3.9418 6.7228 3.8336
16 1 3.0985 4.4580 4.0329
17 6 2.1389 -1.1672 -0.0005
18 8 3.3518 -1.1672 -0.0010
19 6 1.3855 -2.4723 -0.0005
20 1 0.4478 -2.3513 -0.5431
21 6 1.0907 -2.8925 1.4419
22 8 0.4425 -4.1672 1.4388
23 6 1.2079 -5.2010 0.8135
24 6 1.5037 -4.8041 -0.6353
25 7 2.1993 -3.5090 -0.6519
26 6 2.5518 -3.1173 -2.0231
27 1 -0.3633 -0.0906 1.0237
28 1 -0.3633 0.9318 -0.4333
29 1 -0.3634 -0.8413 -0.5903
30 1 3.1454 1.1410 -0.5227
31 1 1.6039 2.0310 -0.5048
32 1 3.5185 0.2764 2.7734
33 1 4.4845 0.7962 1.3184
34 1 4.9487 2.7875 2.6882
35 1 3.4152 2.5726 3.6352
36 1 4.0913 7.2498 1.1846
37 1 2.0251 -2.9606 1.9992
38 1 0.4398 -2.1542 1.9103
39 1 2.1456 -5.3362 1.3526
40 1 0.6416 -6.1322 0.8275
41 1 2.1351 -5.5623 -1.0986
42 1 0.5680 -4.7219 -1.1883
43 1 3.0662 -2.1565 -2.0056
44 1 3.2060 -3.8719 -2.4596
45 1 1.6446 -3.0329 -2.6214
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001085554044.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:00:42
Heat of formation + Delta-G solvation = 11.489585 kcal
Electronic energy + Delta-G solvation = -25653.382531 eV
Core-core repulsion = 22095.250017 eV
Total energy + Delta-G solvation = -3558.132514 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-40.73468 -39.11117 -38.06378 -35.90781 -35.24740 -32.30062 -31.84157 -29.35741
-28.64601 -28.21249 -26.53401 -24.86287 -24.45080 -23.18802 -22.75855 -21.02234
-19.37342 -18.99349 -17.36867 -16.88416 -16.72008 -16.64289 -16.02338 -15.54089
-15.23935 -15.13975 -14.82250 -14.33066 -14.06027 -13.87826 -13.51294 -13.22135
-13.06784 -12.88374 -12.61555 -12.52586 -12.28172 -12.15897 -11.87939 -11.80975
-11.55208 -11.49379 -11.09086 -10.96802 -10.70417 -10.20449 -10.12517 -10.06382
-9.93267 -9.52620 -9.32888 -8.89340 -8.63488 -8.37901 -7.08456 -5.90810
-3.26107 2.61332 2.89870 3.38120 3.44863 3.46470 3.47817 3.65559
4.39163 4.51121 4.56333 4.63658 4.64812 4.81197 4.87172 4.90384
5.10075 5.22650 5.23769 5.29119 5.32028 5.32297 5.36952 5.40708
5.46540 5.57342 5.69191 5.75268 5.80929 5.86780 5.92506 6.17468
6.31223 6.43348 6.50311 6.52762 6.57816 6.62659 6.65188 6.76590
7.15017 7.26215 7.48249 8.27777 8.36783 8.68035 9.64733 10.37702
11.26128
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.029999 B = 0.003685 C = 0.003577
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 933.147791 B = 7596.845379 C = 7826.151535
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.074 3.926
2 N -0.610 5.610
3 C 0.118 3.882
4 C 0.131 3.869
5 H 0.045 0.955
6 C -0.140 4.140
7 C 0.095 3.905
8 N -0.616 5.616
9 C -0.222 4.222
10 H 0.097 0.903
11 C 0.018 3.982
12 N -0.921 5.921
13 Si 0.886 3.114
14 H -0.285 1.285
15 H -0.299 1.299
16 H -0.271 1.271
17 C 0.517 3.483
18 O -0.507 6.507
19 C 0.030 3.970
20 H 0.070 0.930
21 C 0.077 3.923
22 O -0.380 6.380
23 C 0.060 3.940
24 C 0.019 3.981
25 N -0.519 5.519
26 C 0.021 3.979
27 H 0.058 0.942
28 H 0.078 0.922
29 H 0.065 0.935
30 H 0.087 0.913
31 H 0.078 0.922
32 H 0.055 0.945
33 H 0.090 0.910
34 H 0.051 0.949
35 H 0.040 0.960
36 H 0.263 0.737
37 H 0.070 0.930
38 H 0.104 0.896
39 H 0.063 0.937
40 H 0.100 0.900
41 H 0.090 0.910
42 H 0.043 0.957
43 H 0.082 0.918
44 H 0.073 0.927
45 H 0.023 0.977
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.466 -23.251 -2.187 24.840
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 N -0.345 5.345
3 C -0.005 4.005
4 C 0.023 3.977
5 H 0.063 0.937
6 C -0.178 4.178
7 C -0.030 4.030
8 N -0.344 5.344
9 C -0.349 4.349
10 H 0.114 0.886
11 C -0.180 4.180
12 N -0.566 5.566
13 Si 0.717 3.283
14 H -0.212 1.212
15 H -0.227 1.227
16 H -0.196 1.196
17 C 0.302 3.698
18 O -0.381 6.381
19 C -0.082 4.082
20 H 0.088 0.912
21 C 0.000 4.000
22 O -0.298 6.298
23 C -0.017 4.017
24 C -0.109 4.109
25 N -0.245 5.245
26 C -0.126 4.126
27 H 0.076 0.924
28 H 0.097 0.903
29 H 0.083 0.917
30 H 0.106 0.894
31 H 0.097 0.903
32 H 0.074 0.926
33 H 0.108 0.892
34 H 0.069 0.931
35 H 0.058 0.942
36 H 0.073 0.927
37 H 0.088 0.912
38 H 0.122 0.878
39 H 0.081 0.919
40 H 0.118 0.882
41 H 0.109 0.891
42 H 0.061 0.939
43 H 0.100 0.900
44 H 0.091 0.909
45 H 0.042 0.958
Dipole moment (debyes) X Y Z Total
from point charges -7.511 -22.898 -1.974 24.179
hybrid contribution -0.463 0.466 0.414 0.777
sum -7.974 -22.432 -1.560 23.858
Atomic orbital electron populations
1.21894 0.79950 1.03187 1.01898 1.47933 1.06824 1.06483 1.73255
1.21848 0.97509 0.82354 0.98795 1.22426 0.94699 0.86800 0.93772
0.93735 1.23485 0.98931 0.95457 0.99974 1.22623 0.96489 0.91772
0.92163 1.46110 1.42071 1.10081 1.36111 1.18587 1.36809 0.81493
0.97973 0.88556 1.24932 1.00268 0.94829 0.97926 1.69735 1.49268
1.02038 1.35533 0.86747 0.78620 0.76003 0.86978 1.21205 1.22700
1.19617 1.20021 0.88116 0.84316 0.77323 1.90724 1.13206 1.86680
1.47510 1.22421 0.95616 0.91432 0.98737 0.91231 1.22523 0.99065
0.85550 0.92879 1.88007 1.44731 1.17911 1.79125 1.22728 0.96719
0.90756 0.91500 1.22847 0.97759 0.92035 0.98256 1.61918 1.42207
1.01382 1.18981 1.22484 0.99777 1.03285 0.87099 0.92359 0.90318
0.91682 0.89445 0.90330 0.92639 0.89177 0.93068 0.94224 0.92718
0.91191 0.87807 0.91854 0.88191 0.89136 0.93897 0.89971 0.90866
0.95826
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.73 10.21 59.84 0.61 1.34 16
2 N -0.61 -8.33 2.87 -181.57 -0.52 -8.86 16
3 C 0.12 2.04 5.38 -4.04 -0.02 2.01 16
4 C 0.13 2.55 4.31 -72.38 -0.31 2.24 16
5 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16
6 C -0.14 -2.67 7.27 -26.21 -0.19 -2.86 16
7 C 0.09 2.10 5.62 -8.49 -0.05 2.05 16
8 N -0.62 -15.04 3.38 -176.96 -0.60 -15.64 16
9 C -0.22 -6.30 10.99 -15.06 -0.17 -6.46 16
10 H 0.10 2.84 8.06 -52.49 -0.42 2.42 16
11 C 0.02 0.54 5.50 -17.43 -0.10 0.44 16
12 N -0.92 -28.72 13.97 55.49 0.78 -27.94 16
13 Si 0.89 23.05 25.26 -169.99 -4.29 18.76 16
14 H -0.29 -7.33 6.95 56.52 0.39 -6.93 16
15 H -0.30 -7.84 7.11 56.52 0.40 -7.43 16
16 H -0.27 -6.82 6.01 56.52 0.34 -6.48 16
17 C 0.52 7.34 5.78 -10.98 -0.06 7.27 16
18 O -0.51 -9.00 13.94 5.55 0.08 -8.93 16
19 C 0.03 0.34 1.77 -68.75 -0.12 0.22 16
20 H 0.07 0.70 6.00 -51.93 -0.31 0.39 16
21 C 0.08 0.83 6.28 37.21 0.23 1.06 16
22 O -0.38 -3.99 10.83 -35.23 -0.38 -4.37 16
23 C 0.06 0.49 7.01 37.21 0.26 0.75 16
24 C 0.02 0.16 5.67 -3.71 -0.02 0.14 16
25 N -0.52 -5.85 4.53 -235.96 -1.07 -6.92 16
26 C 0.02 0.23 9.25 60.06 0.56 0.78 16
27 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16
28 H 0.08 0.75 7.83 -51.93 -0.41 0.34 16
29 H 0.06 0.51 6.03 -51.92 -0.31 0.20 16
30 H 0.09 1.69 7.21 -51.93 -0.37 1.32 16
31 H 0.08 1.37 7.85 -51.93 -0.41 0.97 16
32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16
33 H 0.09 1.81 7.66 -51.93 -0.40 1.41 16
34 H 0.05 1.18 7.02 -51.93 -0.36 0.81 16
35 H 0.04 0.87 6.80 -51.93 -0.35 0.52 16
36 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16
37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
38 H 0.10 0.98 8.09 -51.93 -0.42 0.56 16
39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16
40 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16
41 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16
42 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16
43 H 0.08 1.09 6.13 -51.93 -0.32 0.77 16
44 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16
45 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16
LS Contribution 348.23 15.07 5.25 5.25
Total: -1.00 -33.75 348.23 -7.66 -41.42
By element:
Atomic # 1 Polarization: 5.76 SS G_CDS: -7.52 Total: -1.76 kcal
Atomic # 6 Polarization: 8.37 SS G_CDS: 0.62 Total: 9.00 kcal
Atomic # 7 Polarization: -57.95 SS G_CDS: -1.41 Total: -59.36 kcal
Atomic # 8 Polarization: -12.99 SS G_CDS: -0.30 Total: -13.30 kcal
Atomic # 14 Polarization: 23.05 SS G_CDS: -4.29 Total: 18.76 kcal
Total LS contribution 5.25 Total: 5.25 kcal
Total: -33.75 -7.66 -41.42 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001085554044.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 52.907 kcal
(2) G-P(sol) polarization free energy of solvation -33.755 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.153 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.418 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.490 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds