Wall clock time and date at job start Tue Mar 31 2020 04:00:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46495 * 1
3 3 C 1.46497 * 120.00218 * 2 1
4 4 C 1.53003 * 109.46836 * 90.57420 * 3 2 1
5 5 H 1.09006 * 112.74006 * 313.68769 * 4 3 2
6 6 C 1.53498 * 113.46784 * 84.50715 * 4 3 2
7 7 C 1.53502 * 83.34554 * 140.84590 * 6 4 3
8 8 N 1.47069 * 87.98395 * 333.93313 * 7 6 4
9 9 C 1.36933 * 136.05487 * 207.14721 * 8 7 6
10 10 H 1.08002 * 119.99880 * 161.36773 * 9 8 7
11 11 C 1.38810 * 120.00124 * 341.37341 * 9 8 7
12 12 N 1.31624 * 119.99581 * 167.94444 * 11 9 8
13 13 Si 1.86795 * 120.00318 * 347.94481 * 11 9 8
14 14 H 1.48499 * 109.47108 * 85.73667 * 13 11 9
15 15 H 1.48494 * 109.47349 * 205.74112 * 13 11 9
16 16 H 1.48500 * 109.46859 * 325.74135 * 13 11 9
17 17 C 1.34779 * 120.00371 * 180.02562 * 2 1 3
18 18 O 1.21283 * 120.00428 * 179.97438 * 17 2 1
19 19 C 1.50702 * 119.99807 * 359.97438 * 17 2 1
20 20 H 1.09003 * 109.50639 * 31.90121 * 19 17 2
21 21 C 1.53104 * 109.50653 * 271.81952 * 19 17 2
22 22 O 1.43011 * 109.25782 * 183.21941 * 21 19 17
23 23 C 1.43017 * 113.74404 * 58.66492 * 22 21 19
24 24 C 1.53099 * 109.25587 * 301.33011 * 23 22 21
25 25 N 1.47013 * 109.50874 * 151.98830 * 19 17 2
26 26 C 1.46900 * 111.00151 * 302.32947 * 25 19 17
27 27 H 1.09005 * 109.47049 * 264.94043 * 1 2 3
28 28 H 1.08994 * 109.47222 * 24.94004 * 1 2 3
29 29 H 1.09008 * 109.47156 * 144.94353 * 1 2 3
30 30 H 1.08999 * 109.47702 * 210.57429 * 3 2 1
31 31 H 1.09005 * 109.47185 * 330.58144 * 3 2 1
32 32 H 1.09000 * 114.21023 * 254.43766 * 6 4 3
33 33 H 1.09003 * 114.20438 * 27.26287 * 6 4 3
34 34 H 1.08993 * 113.46679 * 219.15126 * 7 6 4
35 35 H 1.09001 * 113.51774 * 88.72390 * 7 6 4
36 36 H 0.97005 * 119.99413 * 179.97438 * 12 11 9
37 37 H 1.09002 * 109.49923 * 303.14914 * 21 19 17
38 38 H 1.08995 * 109.50636 * 63.27888 * 21 19 17
39 39 H 1.08999 * 109.50076 * 61.26291 * 23 22 21
40 40 H 1.09003 * 109.50390 * 181.39571 * 23 22 21
41 41 H 1.09004 * 109.50208 * 176.77845 * 24 23 22
42 42 H 1.08999 * 109.50561 * 296.86883 * 24 23 22
43 43 H 1.09001 * 109.47005 * 56.41361 * 26 25 19
44 44 H 1.08992 * 109.46824 * 176.41713 * 26 25 19
45 45 H 1.09001 * 109.46638 * 296.41542 * 26 25 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4650 1.7030 1.4425
5 1 1.5838 1.6180 2.0784
6 6 3.7224 1.0655 2.0497
7 6 3.9104 2.4565 2.6711
8 7 3.1387 3.0062 1.5463
9 6 3.0757 4.2042 0.8859
10 1 2.6335 4.2557 -0.0981
11 6 3.5803 5.3522 1.4811
12 7 3.7391 6.4474 0.7686
13 14 4.0339 5.3428 3.2931
14 1 5.4220 4.8400 3.4533
15 1 3.9418 6.7228 3.8336
16 1 3.0985 4.4580 4.0329
17 6 2.1389 -1.1672 -0.0005
18 8 3.3518 -1.1672 -0.0010
19 6 1.3855 -2.4723 -0.0005
20 1 0.4478 -2.3513 -0.5431
21 6 1.0907 -2.8925 1.4419
22 8 0.4425 -4.1672 1.4388
23 6 1.2079 -5.2010 0.8135
24 6 1.5037 -4.8041 -0.6353
25 7 2.1993 -3.5090 -0.6519
26 6 2.5518 -3.1173 -2.0231
27 1 -0.3633 -0.0906 1.0237
28 1 -0.3633 0.9318 -0.4333
29 1 -0.3634 -0.8413 -0.5903
30 1 3.1454 1.1410 -0.5227
31 1 1.6039 2.0310 -0.5048
32 1 3.5185 0.2764 2.7734
33 1 4.4845 0.7962 1.3184
34 1 4.9487 2.7875 2.6882
35 1 3.4152 2.5726 3.6352
36 1 4.0913 7.2498 1.1846
37 1 2.0251 -2.9606 1.9992
38 1 0.4398 -2.1542 1.9103
39 1 2.1456 -5.3362 1.3526
40 1 0.6416 -6.1322 0.8275
41 1 2.1351 -5.5623 -1.0986
42 1 0.5680 -4.7219 -1.1883
43 1 3.0662 -2.1565 -2.0056
44 1 3.2060 -3.8719 -2.4596
45 1 1.6446 -3.0329 -2.6214
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001085554044.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:00:41
Heat of formation + Delta-G solvation = -14.385665 kcal
Electronic energy + Delta-G solvation = -25654.504566 eV
Core-core repulsion = 22095.250017 eV
Total energy + Delta-G solvation = -3559.254549 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-41.73388 -40.39154 -39.38802 -36.80422 -36.33842 -34.44122 -32.73212 -30.60966
-30.16221 -29.50515 -27.50801 -25.87833 -25.24702 -25.07267 -24.16475 -21.91877
-21.11700 -20.06319 -18.86263 -18.28406 -17.66309 -17.63638 -17.31333 -16.83820
-16.48595 -16.16881 -15.87396 -15.50050 -15.26251 -15.15373 -14.82020 -14.76770
-14.19015 -14.01212 -13.90585 -13.67627 -13.45807 -13.39240 -13.25326 -13.01560
-12.75944 -12.66114 -12.59130 -12.19525 -12.02279 -11.91324 -11.84874 -11.69836
-11.14101 -11.00837 -10.95511 -10.54734 -9.67736 -9.41238 -9.08818 -8.15464
-5.46770 1.31302 1.34447 1.42997 1.53899 1.82860 2.41874 2.68343
2.85265 3.05839 3.14386 3.50105 3.70314 3.72573 3.83783 3.93559
4.13957 4.18432 4.25294 4.28806 4.30116 4.33948 4.46230 4.49960
4.54967 4.60573 4.63894 4.65885 4.72293 4.80760 4.84010 4.90771
4.94492 4.94679 4.98753 5.00144 5.21789 5.47481 5.57135 5.73336
5.90667 6.04115 6.16079 6.41754 6.50504 7.18626 7.43278 8.30770
9.05401
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.029999 B = 0.003685 C = 0.003577
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 933.147791 B = 7596.845379 C = 7826.151535
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.067 3.933
2 N -0.608 5.608
3 C 0.131 3.869
4 C 0.135 3.865
5 H 0.065 0.935
6 C -0.118 4.118
7 C 0.088 3.912
8 N -0.643 5.643
9 C -0.206 4.206
10 H 0.071 0.929
11 C -0.045 4.045
12 N -0.968 5.968
13 Si 0.945 3.055
14 H -0.282 1.282
15 H -0.304 1.304
16 H -0.254 1.254
17 C 0.516 3.484
18 O -0.549 6.549
19 C 0.039 3.961
20 H 0.088 0.912
21 C 0.081 3.919
22 O -0.387 6.387
23 C 0.055 3.945
24 C 0.021 3.979
25 N -0.541 5.541
26 C 0.026 3.974
27 H 0.076 0.924
28 H 0.080 0.920
29 H 0.089 0.911
30 H 0.059 0.941
31 H 0.073 0.927
32 H 0.085 0.915
33 H 0.075 0.925
34 H 0.038 0.962
35 H 0.054 0.946
36 H 0.261 0.739
37 H 0.053 0.947
38 H 0.118 0.882
39 H 0.057 0.943
40 H 0.128 0.872
41 H 0.106 0.894
42 H 0.052 0.948
43 H 0.050 0.950
44 H 0.084 0.916
45 H 0.037 0.963
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.216 -26.147 -1.056 28.091
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 N -0.341 5.341
3 C 0.007 3.993
4 C 0.029 3.971
5 H 0.083 0.917
6 C -0.156 4.156
7 C -0.037 4.037
8 N -0.371 5.371
9 C -0.334 4.334
10 H 0.088 0.912
11 C -0.238 4.238
12 N -0.617 5.617
13 Si 0.773 3.227
14 H -0.209 1.209
15 H -0.232 1.232
16 H -0.178 1.178
17 C 0.303 3.697
18 O -0.425 6.425
19 C -0.073 4.073
20 H 0.105 0.895
21 C 0.003 3.997
22 O -0.305 6.305
23 C -0.021 4.021
24 C -0.106 4.106
25 N -0.268 5.268
26 C -0.122 4.122
27 H 0.094 0.906
28 H 0.099 0.901
29 H 0.108 0.892
30 H 0.078 0.922
31 H 0.091 0.909
32 H 0.103 0.897
33 H 0.094 0.906
34 H 0.057 0.943
35 H 0.071 0.929
36 H 0.070 0.930
37 H 0.072 0.928
38 H 0.136 0.864
39 H 0.075 0.925
40 H 0.145 0.855
41 H 0.124 0.876
42 H 0.070 0.930
43 H 0.069 0.931
44 H 0.103 0.897
45 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges -9.308 -25.866 -0.832 27.502
hybrid contribution 0.063 1.223 -0.031 1.225
sum -9.245 -24.643 -0.863 26.334
Atomic orbital electron populations
1.22174 0.77193 1.04475 1.03599 1.47936 1.08370 1.04965 1.72877
1.21405 0.96788 0.84093 0.97040 1.22598 0.95366 0.83839 0.95342
0.91744 1.23257 0.98021 0.94649 0.99682 1.22804 0.95616 0.93149
0.92084 1.46228 1.44029 1.10102 1.36758 1.18519 1.34508 0.83026
0.97308 0.91179 1.25593 1.01606 0.94754 1.01854 1.69872 1.51773
1.02863 1.37152 0.85808 0.78673 0.75891 0.82313 1.20889 1.23159
1.17827 1.20584 0.87792 0.85214 0.76092 1.90707 1.15199 1.87302
1.49340 1.22359 0.95578 0.89719 0.99611 0.89468 1.22490 0.98742
0.86307 0.92131 1.88004 1.45085 1.18007 1.79416 1.22939 0.96877
0.91195 0.91102 1.22931 0.98233 0.90836 0.98625 1.61907 1.43257
1.02449 1.19138 1.22395 1.00319 1.02036 0.87423 0.90590 0.90108
0.89224 0.92220 0.90896 0.89651 0.90620 0.94343 0.92876 0.93015
0.92828 0.86367 0.92462 0.85458 0.87551 0.92978 0.93104 0.89695
0.94456
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 1.12 10.21 127.77 1.31 2.43 16
2 N -0.61 -15.61 2.87 -846.75 -2.43 -18.05 16
3 C 0.13 4.50 5.38 86.38 0.46 4.96 16
4 C 0.13 5.08 4.31 41.80 0.18 5.26 16
5 H 0.07 2.25 8.14 -2.38 -0.02 2.24 16
6 C -0.12 -4.30 7.27 30.93 0.22 -4.08 16
7 C 0.09 3.76 5.62 83.19 0.47 4.23 16
8 N -0.64 -31.11 3.38 -713.77 -2.41 -33.52 16
9 C -0.21 -11.88 10.99 84.03 0.92 -10.95 16
10 H 0.07 4.30 8.06 -2.91 -0.02 4.28 16
11 C -0.04 -2.69 5.50 84.86 0.47 -2.22 16
12 N -0.97 -62.21 13.97 21.65 0.30 -61.90 16
13 Si 0.94 47.80 25.26 68.60 1.73 49.54 16
14 H -0.28 -13.99 6.95 99.48 0.69 -13.30 16
15 H -0.30 -15.43 7.11 99.48 0.71 -14.73 16
16 H -0.25 -11.98 6.01 99.48 0.60 -11.38 16
17 C 0.52 13.97 5.78 87.66 0.51 14.48 16
18 O -0.55 -19.43 13.94 -3.04 -0.04 -19.48 16
19 C 0.04 0.80 1.77 44.18 0.08 0.87 16
20 H 0.09 1.45 6.00 -2.39 -0.01 1.43 16
21 C 0.08 1.52 6.28 72.02 0.45 1.97 16
22 O -0.39 -6.93 10.83 -148.98 -1.61 -8.54 16
23 C 0.06 0.74 7.01 72.02 0.50 1.25 16
24 C 0.02 0.29 5.67 86.31 0.49 0.78 16
25 N -0.54 -11.10 4.53 -900.45 -4.08 -15.18 16
26 C 0.03 0.52 9.25 127.69 1.18 1.70 16
27 H 0.08 1.04 8.09 -2.38 -0.02 1.02 16
28 H 0.08 1.34 7.83 -2.39 -0.02 1.32 16
29 H 0.09 1.07 6.03 -2.38 -0.01 1.06 16
30 H 0.06 2.38 7.21 -2.39 -0.02 2.36 16
31 H 0.07 2.57 7.85 -2.38 -0.02 2.55 16
32 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16
33 H 0.08 3.02 7.66 -2.39 -0.02 3.00 16
34 H 0.04 1.73 7.02 -2.39 -0.02 1.71 16
35 H 0.05 2.16 6.80 -2.39 -0.02 2.15 16
36 H 0.26 16.00 8.31 -92.70 -0.77 15.23 16
37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16
38 H 0.12 1.82 8.09 -2.39 -0.02 1.80 16
39 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16
40 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16
41 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16
42 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16
43 H 0.05 1.34 6.13 -2.39 -0.01 1.33 16
44 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16
45 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16
Total: -1.00 -74.59 348.23 -0.46 -75.05
By element:
Atomic # 1 Polarization: 10.57 SS G_CDS: 0.84 Total: 11.41 kcal
Atomic # 6 Polarization: 13.43 SS G_CDS: 7.24 Total: 20.68 kcal
Atomic # 7 Polarization: -120.03 SS G_CDS: -8.62 Total: -128.65 kcal
Atomic # 8 Polarization: -26.37 SS G_CDS: -1.66 Total: -28.02 kcal
Atomic # 14 Polarization: 47.80 SS G_CDS: 1.73 Total: 49.54 kcal
Total: -74.59 -0.46 -75.05 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001085554044.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.663 kcal
(2) G-P(sol) polarization free energy of solvation -74.589 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.926 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.459 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.048 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.386 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds