Wall clock time and date at job start Tue Mar 31 2020 04:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99718 * 2 1 4 4 C 1.52994 * 109.47114 * 82.88709 * 3 2 1 5 5 H 1.08995 * 112.96692 * 309.18815 * 4 3 2 6 6 C 1.53953 * 113.76657 * 177.50838 * 4 3 2 7 7 C 1.53945 * 86.28978 * 222.09195 * 6 4 3 8 8 N 1.47584 * 86.11799 * 23.61099 * 7 6 4 9 9 C 1.36937 * 134.49627 * 155.36344 * 8 7 6 10 10 H 1.08000 * 120.00112 * 162.75645 * 9 8 7 11 11 C 1.38816 * 119.99807 * 342.75392 * 9 8 7 12 12 N 1.31614 * 119.99854 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00015 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47037 * 90.00092 * 13 11 9 15 15 H 1.48497 * 109.47248 * 210.00070 * 13 11 9 16 16 H 1.48506 * 109.47111 * 330.00520 * 13 11 9 17 17 C 1.34775 * 120.00303 * 179.97438 * 2 1 3 18 18 O 1.21280 * 119.99946 * 183.53761 * 17 2 1 19 19 C 1.50697 * 119.99638 * 3.54517 * 17 2 1 20 20 H 1.09003 * 109.51246 * 30.22080 * 19 17 2 21 21 C 1.53093 * 109.50782 * 270.12798 * 19 17 2 22 22 O 1.43016 * 109.26136 * 183.21736 * 21 19 17 23 23 C 1.43014 * 113.73729 * 58.67443 * 22 21 19 24 24 C 1.53102 * 109.25631 * 301.32831 * 23 22 21 25 25 N 1.47014 * 109.50666 * 150.30536 * 19 17 2 26 26 C 1.46904 * 111.00092 * 302.32531 * 25 19 17 27 27 H 1.09002 * 109.47101 * 87.87261 * 1 2 3 28 28 H 1.08994 * 109.47392 * 327.87536 * 1 2 3 29 29 H 1.08996 * 109.47339 * 207.86822 * 1 2 3 30 30 H 1.09006 * 109.46736 * 202.89158 * 3 2 1 31 31 H 1.08998 * 109.47398 * 322.88141 * 3 2 1 32 32 H 1.09001 * 113.74238 * 336.43836 * 6 4 3 33 33 H 1.08996 * 113.73901 * 107.64030 * 6 4 3 34 34 H 1.09000 * 113.77273 * 137.91055 * 7 6 4 35 35 H 1.09004 * 113.77084 * 269.19793 * 7 6 4 36 36 H 0.97006 * 120.00174 * 179.97438 * 12 11 9 37 37 H 1.08997 * 109.50876 * 303.15807 * 21 19 17 38 38 H 1.09004 * 109.50459 * 63.23914 * 21 19 17 39 39 H 1.09001 * 109.50795 * 61.26440 * 23 22 21 40 40 H 1.08996 * 109.50870 * 181.35133 * 23 22 21 41 41 H 1.09004 * 109.50076 * 176.78213 * 24 23 22 42 42 H 1.08995 * 109.50687 * 296.87197 * 24 23 22 43 43 H 1.09002 * 109.47087 * 65.87347 * 26 25 19 44 44 H 1.08996 * 109.47011 * 185.86903 * 26 25 19 45 45 H 1.09000 * 109.46946 * 305.86985 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.2977 1.7998 1.4313 5 1 1.3356 1.8286 1.9427 6 6 3.1049 3.1050 1.5538 7 6 3.7325 2.4812 2.8135 8 7 3.3763 1.1765 2.2228 9 6 3.8544 -0.0998 2.3557 10 1 3.2559 -0.9374 2.0290 11 6 5.1083 -0.3170 2.9102 12 7 5.8374 0.7037 3.3086 13 14 5.7602 -2.0581 3.0921 14 1 6.5102 -2.4363 1.8675 15 1 6.6647 -2.1276 4.2678 16 1 4.6239 -2.9944 3.2856 17 6 2.1389 -1.1671 0.0005 18 8 3.3500 -1.1680 0.0653 19 6 1.3876 -2.4710 -0.0796 20 1 0.4656 -2.3259 -0.6428 21 6 1.0526 -2.9557 1.3334 22 8 0.4064 -4.2291 1.2546 23 6 1.1908 -5.2335 0.6056 24 6 1.5272 -4.7719 -0.8149 25 7 2.2211 -3.4773 -0.7534 26 6 2.6120 -3.0243 -2.0951 27 1 -0.3633 0.0381 -1.0270 28 1 -0.3634 0.8703 0.5464 29 1 -0.3634 -0.9084 0.4803 30 1 3.1990 1.1101 -0.3998 31 1 1.6695 1.9932 -0.6201 32 1 3.8142 3.2603 0.7409 33 1 2.4914 3.9830 1.7559 34 1 4.8066 2.6469 2.8974 35 1 3.1937 2.7111 3.7327 36 1 6.7135 0.5519 3.6964 37 1 1.9707 -3.0487 1.9135 38 1 0.3882 -2.2389 1.8161 39 1 2.1130 -5.3928 1.1645 40 1 0.6261 -6.1648 0.5622 41 1 2.1726 -5.5085 -1.2936 42 1 0.6076 -4.6651 -1.3902 43 1 3.2665 -2.1569 -2.0094 44 1 3.1388 -3.8273 -2.6105 45 1 1.7207 -2.7526 -2.6608 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085554046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:45 Heat of formation + Delta-G solvation = -14.606289 kcal Electronic energy + Delta-G solvation = -26764.011108 eV Core-core repulsion = 23204.746993 eV Total energy + Delta-G solvation = -3559.264116 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.64251 -40.07346 -39.04475 -36.74642 -36.24100 -34.08873 -32.71100 -30.24311 -29.71581 -29.37054 -27.40833 -25.70551 -25.31254 -25.15101 -23.85068 -21.84652 -20.76075 -20.00015 -18.78441 -18.21407 -17.58806 -17.52783 -16.93358 -16.70537 -16.30369 -16.12570 -15.80424 -15.70646 -15.21864 -14.89685 -14.85778 -14.49623 -14.19866 -13.78876 -13.46361 -13.31391 -13.25550 -13.15099 -12.94676 -12.89312 -12.71913 -12.59206 -12.40031 -12.31447 -12.24622 -11.75873 -11.69845 -11.38971 -11.26933 -10.97042 -10.70273 -10.31937 -9.45722 -9.36859 -8.59065 -7.75092 -5.07017 1.34133 1.41737 1.46752 1.74479 2.04176 2.54055 2.65993 2.87456 3.41608 3.48435 3.64777 3.71405 3.86183 3.90174 4.04434 4.15040 4.19839 4.31270 4.34472 4.43344 4.44068 4.45330 4.55539 4.56252 4.61858 4.71597 4.76623 4.81130 4.86876 4.94393 4.96917 4.98138 5.11148 5.18539 5.47977 5.67137 5.74789 5.79147 5.88115 5.92548 5.98124 6.17339 6.58754 7.10734 7.46908 7.80579 8.73285 9.40374 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014103 B = 0.007220 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.893968 B = 3877.358747 C = 5018.011002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.616 5.616 3 C 0.126 3.874 4 C 0.126 3.874 5 H 0.063 0.937 6 C -0.126 4.126 7 C 0.125 3.875 8 N -0.626 5.626 9 C -0.157 4.157 10 H 0.082 0.918 11 C -0.075 4.075 12 N -0.958 5.958 13 Si 0.953 3.047 14 H -0.303 1.303 15 H -0.298 1.298 16 H -0.280 1.280 17 C 0.497 3.503 18 O -0.520 6.520 19 C 0.048 3.952 20 H 0.091 0.909 21 C 0.080 3.920 22 O -0.384 6.384 23 C 0.052 3.948 24 C 0.025 3.975 25 N -0.553 5.553 26 C 0.032 3.968 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.046 0.954 35 H 0.020 0.980 36 H 0.237 0.763 37 H 0.029 0.971 38 H 0.114 0.886 39 H 0.042 0.958 40 H 0.136 0.864 41 H 0.106 0.894 42 H 0.061 0.939 43 H 0.047 0.953 44 H 0.085 0.915 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.337 -4.787 -11.701 21.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.351 5.351 3 C 0.003 3.997 4 C 0.020 3.980 5 H 0.080 0.920 6 C -0.165 4.165 7 C 0.000 4.000 8 N -0.352 5.352 9 C -0.287 4.287 10 H 0.099 0.901 11 C -0.266 4.266 12 N -0.611 5.611 13 Si 0.786 3.214 14 H -0.232 1.232 15 H -0.226 1.226 16 H -0.205 1.205 17 C 0.283 3.717 18 O -0.394 6.394 19 C -0.064 4.064 20 H 0.109 0.891 21 C 0.003 3.997 22 O -0.302 6.302 23 C -0.025 4.025 24 C -0.102 4.102 25 N -0.280 5.280 26 C -0.116 4.116 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.129 0.871 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.038 0.962 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.132 0.868 39 H 0.061 0.939 40 H 0.153 0.847 41 H 0.125 0.875 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.104 0.896 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -16.248 -5.155 -11.242 20.419 hybrid contribution 0.772 -0.719 0.062 1.057 sum -15.475 -5.874 -11.180 19.974 Atomic orbital electron populations 1.22046 0.77498 1.04180 1.03217 1.47847 1.08060 1.05257 1.73924 1.21661 0.96702 0.84606 0.96775 1.22933 0.92368 0.90858 0.91886 0.91956 1.23463 0.98751 0.96317 0.97920 1.22457 0.99096 0.84674 0.93787 1.46298 1.36691 1.03837 1.48356 1.19343 0.96682 0.83385 1.29267 0.90055 1.25353 0.97425 0.98957 1.04889 1.69960 1.11656 1.29188 1.50309 0.85418 0.77918 0.82458 0.75649 1.23179 1.22559 1.20548 1.20500 0.87990 0.85536 0.77718 1.90876 1.15543 1.86958 1.45984 1.22223 0.95432 0.90596 0.98181 0.89104 1.22418 0.97641 0.86148 0.93524 1.87960 1.43422 1.19410 1.79419 1.22979 0.96133 0.91859 0.91496 1.22896 0.98546 0.90687 0.98121 1.61813 1.42303 1.03088 1.20756 1.22342 1.00077 1.01570 0.87595 0.90456 0.89312 0.90941 0.93271 0.87113 0.91139 0.88878 0.93536 0.96243 0.95362 0.95254 0.86780 0.93936 0.84671 0.87533 0.92112 0.93435 0.89618 0.93946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.37 9.86 127.77 1.26 2.63 16 2 N -0.62 -18.91 2.88 -846.78 -2.44 -21.34 16 3 C 0.13 4.20 5.34 86.38 0.46 4.66 16 4 C 0.13 4.77 4.53 45.09 0.20 4.97 16 5 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 6 C -0.13 -4.54 7.86 31.26 0.25 -4.30 16 7 C 0.13 6.10 7.98 86.48 0.69 6.79 16 8 N -0.63 -32.62 3.54 -694.06 -2.45 -35.08 16 9 C -0.16 -9.33 8.51 84.03 0.71 -8.61 16 10 H 0.08 4.81 4.86 -2.91 -0.01 4.80 16 11 C -0.08 -4.76 5.50 84.86 0.47 -4.30 16 12 N -0.96 -62.94 11.28 21.65 0.24 -62.69 16 13 Si 0.95 53.50 29.55 68.60 2.03 55.53 16 14 H -0.30 -17.51 7.11 99.48 0.71 -16.81 16 15 H -0.30 -16.46 7.11 99.48 0.71 -15.75 16 16 H -0.28 -15.16 7.11 99.48 0.71 -14.45 16 17 C 0.50 18.42 4.56 87.66 0.40 18.82 16 18 O -0.52 -25.55 11.53 -3.03 -0.03 -25.58 16 19 C 0.05 1.43 1.52 44.18 0.07 1.50 16 20 H 0.09 2.16 6.77 -2.39 -0.02 2.14 16 21 C 0.08 2.54 6.11 72.01 0.44 2.98 16 22 O -0.38 -10.68 10.83 -148.98 -1.61 -12.29 16 23 C 0.05 1.18 7.01 72.02 0.50 1.69 16 24 C 0.02 0.53 5.65 86.31 0.49 1.02 16 25 N -0.55 -16.56 4.54 -900.46 -4.08 -20.64 16 26 C 0.03 0.85 9.13 127.69 1.17 2.01 16 27 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.09 1.42 8.08 -2.39 -0.02 1.40 16 29 H 0.07 1.30 5.37 -2.39 -0.01 1.29 16 30 H 0.05 2.09 7.27 -2.38 -0.02 2.07 16 31 H 0.11 2.63 8.12 -2.39 -0.02 2.61 16 32 H 0.07 2.61 8.10 -2.39 -0.02 2.59 16 33 H 0.09 2.56 8.14 -2.39 -0.02 2.55 16 34 H 0.05 2.64 6.59 -2.39 -0.02 2.62 16 35 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.24 15.35 8.31 -92.70 -0.77 14.58 16 37 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.11 3.22 7.04 -2.38 -0.02 3.20 16 39 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.11 1.88 8.09 -2.38 -0.02 1.86 16 42 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.05 1.61 6.46 -2.39 -0.02 1.60 16 44 H 0.09 1.94 8.05 -2.39 -0.02 1.92 16 45 H 0.04 0.92 8.12 -2.39 -0.02 0.90 16 Total: -1.00 -83.32 345.38 -0.27 -83.60 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 0.97 Total: 8.64 kcal Atomic # 6 Polarization: 22.75 SS G_CDS: 7.11 Total: 29.86 kcal Atomic # 7 Polarization: -131.02 SS G_CDS: -8.73 Total: -139.75 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -1.65 Total: -37.87 kcal Atomic # 14 Polarization: 53.50 SS G_CDS: 2.03 Total: 55.53 kcal Total: -83.32 -0.27 -83.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085554046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.992 kcal (2) G-P(sol) polarization free energy of solvation -83.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds