Wall clock time and date at job start Tue Mar 31 2020 03:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47013 * 111.00358 * 2 1 4 4 C 1.53098 * 109.25879 * 182.39367 * 3 2 1 5 5 O 1.43017 * 109.25938 * 303.15043 * 4 3 2 6 6 C 1.43013 * 113.73655 * 58.67364 * 5 4 3 7 7 H 1.08994 * 109.54567 * 61.28445 * 6 5 4 8 8 C 1.50696 * 109.50531 * 181.39533 * 6 5 4 9 9 O 1.21284 * 120.00158 * 4.78551 * 8 6 5 10 10 N 1.34782 * 119.99990 * 184.78014 * 8 6 5 11 11 C 1.46499 * 119.99847 * 179.97438 * 10 8 6 12 12 C 1.53000 * 109.46974 * 180.02562 * 11 10 8 13 13 H 1.09002 * 112.84949 * 45.33483 * 12 11 10 14 14 C 1.53781 * 113.61707 * 176.53042 * 12 11 10 15 15 C 1.53777 * 87.08336 * 140.06298 * 14 12 11 16 16 H 1.09003 * 113.60961 * 89.20081 * 15 14 12 17 17 N 1.46500 * 113.61534 * 220.01705 * 15 14 12 18 18 C 1.36934 * 120.00053 * 205.00207 * 17 15 14 19 19 H 1.07998 * 119.99920 * 0.02562 * 18 17 15 20 20 C 1.38813 * 120.00218 * 180.02562 * 18 17 15 21 21 N 1.31615 * 120.00110 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99766 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47624 * 89.99811 * 22 20 18 24 24 H 1.48502 * 109.46934 * 210.00116 * 22 20 18 25 25 H 1.48498 * 109.47160 * 329.99811 * 22 20 18 26 26 C 1.53775 * 87.07992 * 334.56762 * 15 14 12 27 27 C 1.47019 * 111.00269 * 123.63630 * 2 1 3 28 28 H 1.09000 * 109.47117 * 296.36445 * 1 2 3 29 29 H 1.08998 * 109.47152 * 56.36645 * 1 2 3 30 30 H 1.08997 * 109.47039 * 176.36596 * 1 2 3 31 31 H 1.09002 * 109.50582 * 302.32988 * 3 2 1 32 32 H 1.08996 * 109.50361 * 62.41145 * 3 2 1 33 33 H 1.09001 * 109.50463 * 63.09003 * 4 3 2 34 34 H 1.09002 * 109.50416 * 183.22037 * 4 3 2 35 35 H 0.96991 * 119.99849 * 0.02562 * 10 8 6 36 36 H 1.09001 * 109.46950 * 60.00362 * 11 10 8 37 37 H 1.08992 * 109.47264 * 300.00256 * 11 10 8 38 38 H 1.08997 * 113.61673 * 254.61847 * 14 12 11 39 39 H 1.09005 * 113.61396 * 25.51675 * 14 12 11 40 40 H 0.97002 * 120.00084 * 25.00713 * 17 15 14 41 41 H 0.97006 * 119.99918 * 180.02562 * 21 20 18 42 42 H 1.08993 * 113.61636 * 270.87622 * 26 15 14 43 43 H 1.09008 * 113.61006 * 139.97865 * 26 15 14 44 44 H 1.08999 * 109.50203 * 57.67014 * 27 2 1 45 45 H 1.09000 * 109.53822 * 297.56359 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5250 1.3263 -0.0604 5 8 4.0176 0.5573 1.0403 6 6 3.5250 -0.7850 1.0708 7 1 3.8385 -1.3091 0.1681 8 6 4.0742 -1.4951 2.2813 9 8 4.7436 -0.8869 3.0894 10 7 3.8214 -2.8060 2.4660 11 6 4.3557 -3.4964 3.6424 12 6 3.9261 -4.9645 3.6111 13 1 4.0552 -5.4225 2.6304 14 6 4.5074 -5.8012 4.7630 15 6 3.1370 -6.4937 4.8471 16 1 3.0508 -7.3706 4.2053 17 7 2.6906 -6.7469 6.2193 18 6 1.8053 -7.7597 6.4754 19 1 1.4365 -8.3722 5.6659 20 6 1.3819 -7.9993 7.7755 21 7 0.5307 -8.9725 8.0216 22 14 2.0192 -6.9395 9.1755 23 1 1.1201 -5.7725 9.3620 24 1 2.0563 -7.7406 10.4254 25 1 3.3880 -6.4631 8.8522 26 6 2.5417 -5.2165 4.2314 27 6 1.9959 -0.7603 1.1427 28 1 -0.3633 0.4564 0.9208 29 1 -0.3633 0.5692 -0.8556 30 1 -0.3633 -1.0256 -0.0651 31 1 1.6134 1.9092 -0.8682 32 1 1.6821 1.8827 0.9106 33 1 3.8385 0.8643 -0.9965 34 1 3.9222 2.3397 -0.0029 35 1 3.2863 -3.2925 1.8196 36 1 3.9714 -3.0242 4.5465 37 1 5.4440 -3.4364 3.6358 38 1 5.3145 -6.4661 4.4556 39 1 4.7549 -5.2142 5.6475 40 1 3.0220 -6.1970 6.9464 41 1 0.2345 -9.1396 8.9301 42 1 2.2517 -4.4697 4.9704 43 1 1.7618 -5.4095 3.4946 44 1 1.6134 -1.7803 1.1086 45 1 1.6828 -0.2850 2.0723 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086052262.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:52 Heat of formation + Delta-G solvation = -63.600441 kcal Electronic energy + Delta-G solvation = -24078.122993 eV Core-core repulsion = 20516.734331 eV Total energy + Delta-G solvation = -3561.388662 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.48171 -40.29034 -39.48485 -36.79301 -36.10976 -35.07711 -33.00198 -32.44308 -30.01217 -28.68863 -26.46090 -26.18977 -25.27144 -25.07646 -22.45683 -22.01442 -21.43889 -20.71598 -19.36102 -18.55880 -17.90178 -17.16966 -16.87528 -16.72164 -16.38957 -16.13101 -16.01811 -15.94439 -15.63032 -15.27007 -14.85881 -14.70213 -14.35848 -14.15156 -13.96649 -13.33703 -13.24422 -13.21132 -13.05574 -12.92881 -12.82722 -12.68974 -12.45191 -12.15675 -11.93161 -11.82353 -11.68472 -11.55844 -11.14056 -10.89298 -10.83661 -10.75314 -10.13744 -9.55078 -9.26240 -8.02889 -5.34847 1.37375 1.39348 1.44138 1.46712 1.77200 2.47576 2.68123 3.00486 3.27904 3.57987 3.60251 3.67044 3.74418 3.87494 3.89018 3.95927 4.10155 4.12365 4.27622 4.29588 4.38876 4.45782 4.53403 4.56242 4.59403 4.63949 4.77051 4.77440 4.89249 4.96679 4.98347 5.00046 5.04429 5.22431 5.31759 5.41243 5.66828 5.75761 5.78768 5.84681 5.97926 6.23388 6.49319 7.08329 7.14975 7.87096 8.04192 9.18692 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.022384 B = 0.002710 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.571162 B =10330.295351 C =10806.520337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.541 5.541 3 C 0.013 3.987 4 C 0.058 3.942 5 O -0.391 6.391 6 C 0.083 3.917 7 H 0.117 0.883 8 C 0.516 3.484 9 O -0.573 6.573 10 N -0.705 5.705 11 C 0.138 3.862 12 C -0.096 4.096 13 H 0.123 0.877 14 C -0.137 4.137 15 C 0.145 3.855 16 H 0.079 0.921 17 N -0.745 5.745 18 C -0.229 4.229 19 H 0.061 0.939 20 C -0.066 4.066 21 N -0.984 5.984 22 Si 0.951 3.049 23 H -0.282 1.282 24 H -0.297 1.297 25 H -0.252 1.252 26 C -0.155 4.155 27 C 0.032 3.968 28 H 0.022 0.978 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.032 0.968 33 H 0.076 0.924 34 H 0.117 0.883 35 H 0.418 0.582 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.364 0.636 41 H 0.257 0.743 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.112 0.888 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.944 20.533 -22.329 30.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.266 5.266 3 C -0.115 4.115 4 C -0.018 4.018 5 O -0.310 6.310 6 C 0.022 3.978 7 H 0.135 0.865 8 C 0.301 3.699 9 O -0.452 6.452 10 N -0.359 5.359 11 C 0.014 3.986 12 C -0.115 4.115 13 H 0.141 0.859 14 C -0.177 4.177 15 C 0.036 3.964 16 H 0.098 0.902 17 N -0.386 5.386 18 C -0.360 4.360 19 H 0.079 0.921 20 C -0.257 4.257 21 N -0.635 5.635 22 Si 0.779 3.221 23 H -0.208 1.208 24 H -0.224 1.224 25 H -0.177 1.177 26 C -0.195 4.195 27 C -0.097 4.097 28 H 0.041 0.959 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.131 0.869 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.135 0.865 35 H 0.256 0.744 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.197 0.803 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.131 0.869 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 5.564 20.612 -22.074 30.710 hybrid contribution -0.767 0.381 1.776 1.971 sum 4.797 20.993 -20.299 29.593 Atomic orbital electron populations 1.22481 0.85241 1.03603 1.01255 1.62292 1.09596 1.13873 1.40868 1.22924 0.96350 0.89721 1.02525 1.22991 0.92523 0.97047 0.89279 1.88092 1.70108 1.22613 1.50150 1.21961 0.93607 0.85370 0.96878 0.86517 1.20564 0.79967 0.82512 0.86827 1.90714 1.40620 1.67079 1.46766 1.45779 1.54468 1.08862 1.26749 1.21289 0.98680 0.91288 0.87348 1.22476 0.96264 0.92849 0.99875 0.85863 1.23369 0.97635 0.98530 0.98149 1.21948 0.94007 0.95495 0.84931 0.90245 1.42821 1.52817 1.37782 1.05190 1.19138 1.16326 1.07133 0.93432 0.92109 1.25486 1.00250 1.00071 0.99940 1.69876 1.38304 1.35005 1.20335 0.85457 0.79253 0.78262 0.79106 1.20807 1.22369 1.17708 1.23738 0.96694 0.99305 0.99762 1.22665 0.93055 1.01444 0.92550 0.95900 0.89428 0.90069 0.86913 0.94932 0.90604 0.86469 0.74425 0.93094 0.91372 0.89935 0.90709 0.80258 0.93434 0.91795 0.91230 0.86939 0.95292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.60 127.69 1.23 1.45 16 2 N -0.54 -7.17 4.99 -921.44 -4.59 -11.76 16 3 C 0.01 0.16 5.66 86.31 0.49 0.64 16 4 C 0.06 0.78 7.01 72.01 0.50 1.28 16 5 O -0.39 -8.82 10.01 -130.02 -1.30 -10.12 16 6 C 0.08 1.52 3.22 29.88 0.10 1.62 16 7 H 0.12 1.55 8.14 -2.39 -0.02 1.54 16 8 C 0.52 12.36 7.18 87.66 0.63 12.99 16 9 O -0.57 -19.84 16.51 15.92 0.26 -19.58 16 10 N -0.71 -12.86 5.52 -463.06 -2.56 -15.41 16 11 C 0.14 2.98 5.50 86.38 0.48 3.46 16 12 C -0.10 -1.97 3.75 -10.27 -0.04 -2.00 16 13 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 14 C -0.14 -3.59 7.39 31.12 0.23 -3.36 16 15 C 0.14 4.98 4.48 45.51 0.20 5.19 16 16 H 0.08 2.79 8.10 -2.39 -0.02 2.77 16 17 N -0.75 -33.87 5.20 -320.46 -1.67 -35.54 16 18 C -0.23 -12.87 10.45 84.03 0.88 -11.99 16 19 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 20 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 21 N -0.98 -63.12 13.97 21.65 0.30 -62.82 16 22 Si 0.95 45.84 27.74 68.60 1.90 47.75 16 23 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 24 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 25 H -0.25 -11.01 6.52 99.48 0.65 -10.36 16 26 C -0.15 -4.29 7.43 31.12 0.23 -4.06 16 27 C 0.03 0.49 4.90 86.31 0.42 0.92 16 28 H 0.02 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.64 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.80 16 34 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.42 4.81 8.34 -92.71 -0.77 4.04 16 36 H 0.05 1.33 7.88 -2.39 -0.02 1.32 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.07 2.05 8.08 -2.38 -0.02 2.04 16 40 H 0.36 16.15 5.78 -92.71 -0.54 15.61 16 41 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 42 H 0.06 1.98 7.92 -2.39 -0.02 1.96 16 43 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 44 H 0.11 1.29 8.01 -2.39 -0.02 1.27 16 45 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -77.71 363.06 -2.22 -79.94 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: -0.39 Total: 24.85 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 5.82 Total: 2.70 kcal Atomic # 7 Polarization: -117.02 SS G_CDS: -8.51 Total: -125.53 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -1.04 Total: -29.70 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.90 Total: 47.75 kcal Total: -77.71 -2.22 -79.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086052262.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.335 kcal (2) G-P(sol) polarization free energy of solvation -77.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds